Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1478 Fragaria x ananassa HOM05D007031 ORTHO05D008815 6.9e-62 240.4 113 100.0
FAN13G0327 Fragaria x ananassa HOM05D007031 ORTHO05D008815 3.2e-43 178.3 84 97.6
FAN18G3883 Fragaria x ananassa HOM05D007031 ORTHO05D008815 3.2e-43 178.3 84 97.6
RcHm_v2.0_Chr7g0203161 Rosa chinensis HOM05D007031 ORTHO05D008815 2.1e-42 175.6 84 95.2
FAN08G1843 Fragaria x ananassa HOM05D007031 ORTHO05D008815 2.7e-42 175.3 84 96.4
FvH4_5g18810 Fragaria vesca HOM05D007031 ORTHO05D008815 1.8e-41 172.6 80 97.5
FAN14G5160 Fragaria x ananassa HOM05D007031 ORTHO05D008815 1.2e-37 159.8 84 85.7
CiPaw.12G109600 Carya illinoinensis HOM05D007031 ORTHO05D008815 3.6e-34 148.3 80 80.0
QL12p012249 Quercus lobata HOM05D007031 ORTHO05D008815 3.6e-34 148.3 80 81.2
Cfa012711 Carpinus fangiana HOM05D007031 ORTHO05D008815 1.8e-33 146.0 80 81.2
Glyma.11G032300 Glycine max HOM05D007031 ORTHO05D008815 4.0e-33 144.8 82 80.5
CANSAT21G0077 Cannabis sativa HOM05D007031 ORTHO05D008815 2.6e-32 142.1 78 79.5
Lalb_Chr09g0324411 Lupinus albus HOM05D007031 ORTHO05D008815 2.6e-32 142.1 81 77.8
Phvul.002G062701 Phaseolus vulgaris HOM05D007031 ORTHO05D008815 7.5e-32 140.6 77 83.1
Lj2g0002187 Lotus japonicus HOM05D007031 ORTHO05D008815 3.7e-31 138.3 81 76.5
TPR.G25905 Trifolium pratense HOM05D007031 ORTHO05D008815 4.9e-31 137.9 76 81.6
ClCG01G004020 Citrullus lanatus HOM05D007031 ORTHO05D008815 1.1e-30 136.7 78 79.5
Gohir.D08G188900 Gossypium hirsutum HOM05D007031 ORTHO05D008815 1.8e-30 136.0 80 76.2
Gorai.004G199000 Gossypium raimondii HOM05D007031 ORTHO05D008815 1.8e-30 136.0 80 76.2
MBI04_g09491_MAGBIO Magnolia biondii HOM05D007031 ORTHO05D008815 4.1e-30 134.8 77 77.9
Dinv21635 Davidia involucrata HOM05D007031 ORTHO05D008815 5.4e-30 134.4 79 79.7
Potri.003G076400 Populus trichocarpa HOM05D007031 ORTHO05D008815 5.4e-30 134.4 78 74.4
Hma1.2p1_0316F.1_g123210 Hydrangea macrophylla HOM05D007031 ORTHO05D008815 7.0e-30 134.0 80 75.0
Psat2g177560 Pisum sativum HOM05D007031 ORTHO05D008815 7.0e-30 134.0 80 75.0
Sed0003740 Sechium edule HOM05D007031 ORTHO05D008815 7.0e-30 134.0 78 78.2
Hund14533 Selenicereus undatus HOM05D007031 ORTHO05D008815 7.0e-30 134.0 85 74.1
CsaV3_5G004200 Cucumis sativus L. HOM05D007031 ORTHO05D008815 9.2e-30 133.7 75 81.3
Ciclev10022693m.g Citrus clementina HOM05D007031 ORTHO05D008815 1.2e-29 133.3 82 74.4
TAR636G3191 Trochodendron aralioides HOM05D007031 ORTHO05D008815 1.2e-29 133.3 85 72.9
CSS0002961 Camellia sinensis var. sinensis HOM05D007031 ORTHO05D008815 1.6e-29 132.9 82 76.8
MSTRG.13772 Avicennia marina HOM05D007031 ORTHO05D008815 2.0e-29 132.5 80 77.5
Nn6g33971 Nelumbo nucifera HOM05D007031 ORTHO05D008815 2.0e-29 132.5 75 74.7
CSS0040909 Camellia sinensis var. sinensis HOM05D007031 ORTHO05D008815 3.5e-29 131.7 80 77.5
Solyc08g007380.4 Solanum lycopersicum HOM05D007031 ORTHO05D008815 3.5e-29 131.7 79 75.9
Sopen08g003330 Solanum pennellii HOM05D007031 ORTHO05D008815 3.5e-29 131.7 79 75.9
Atru.chr9.1322 Acer truncatum HOM05D007031 ORTHO05D008815 5.9e-29 131.0 80 73.8
CDE09G0628 Ceratophyllum demersum HOM05D005321 ORTHO05D006360 5.9e-29 131.0 79 73.4
PSO724G0679 Papaver somniferum HOM05D007031 ORTHO05D008815 5.9e-29 131.0 79 73.4
MELO3C005535.2 Cucumis melo HOM05D007031 ORTHO05D008815 7.8e-29 130.6 75 78.7
BcaC09g50373 Brassica carinata HOM05D007031 ORTHO05D008815 1.0e-28 130.2 85 71.8
Duzib205G0920 Durio zibethinus HOM05D007031 ORTHO05D008815 1.0e-28 130.2 79 75.9
PSO386G0128 Papaver somniferum HOM05D007031 ORTHO05D008815 1.0e-28 130.2 79 73.4
Aqoxy5G01014 Aquilegia oxysepala HOM05D007031 ORTHO05D008815 1.3e-28 129.8 76 72.4
CAN.G1227.14 Capsicum annuum HOM05D007031 ORTHO05D008815 1.3e-28 129.8 79 74.7
Eucgr.E00427 Eucalyptus grandis HOM05D007031 ORTHO05D008815 1.3e-28 129.8 78 74.4
Peaxi162Scf00102g01143 Petunia axillaris HOM05D007031 ORTHO05D008815 1.3e-28 129.8 79 77.2
CSS0026472 Camellia sinensis var. sinensis HOM05D007031 ORTHO05D008815 1.7e-28 129.4 79 75.9
HPP92_021039 Vanilla planifolia HOM05D007031 ORTHO05D008815 2.9e-28 128.6 82 72.0
HPP92_027426 Vanilla planifolia HOM05D007031 ORTHO05D008815 2.9e-28 128.6 82 72.0
SEGI_08804 Sequoiadendron giganteum HOM05D007031 ORTHO05D008815 3.8e-28 128.3 85 69.4
arahy.Tifrunner.gnm1.ann1.R85P7C Arachis hypogaea HOM05D007031 ORTHO05D008815 5.0e-28 127.9 78 70.5
Lsat_1_v5_gn_5_187960 Lactuca sativa HOM05D007031 ORTHO05D008815 5.0e-28 127.9 79 74.7
BcaNung00171 Brassica carinata HOM05D007031 ORTHO05D008815 6.6e-28 127.5 85 72.9
CARHR223050 Cardamine hirsuta HOM05D007031 ORTHO05D008815 6.6e-28 127.5 85 72.9
TWI60G0154 Tripterygium wilfordii HOM05D007031 ORTHO05D008815 6.6e-28 127.5 79 74.7
ATR0317G125 Amborella trichopoda HOM05D007031 ORTHO05D008815 8.6e-28 127.1 77 70.1
arahy.Tifrunner.gnm1.ann1.WL6NYT Arachis hypogaea HOM05D007031 ORTHO05D008815 8.6e-28 127.1 78 69.2
BolC1t02559H Brassica oleracea HOM05D007031 ORTHO05D008815 8.6e-28 127.1 80 73.8
Gohir.A08G170700 Gossypium hirsutum HOM05D007031 ORTHO05D008815 1.1e-27 126.7 80 73.8
Lj2A217G30 Lonicera japonica HOM05D007031 ORTHO05D008815 1.5e-27 126.3 80 71.2
Cc08_g12500 Coffea canephora HOM05D007031 ORTHO05D008815 1.9e-27 125.9 80 71.2
Actinidia14432 Actinidia chinensis HOM05D007031 ORTHO05D008815 3.3e-27 125.2 80 70.0
Aa31LG2G12690 Aethionema arabicum HOM05D007031 ORTHO05D008815 3.3e-27 125.2 86 70.9
BraA01t02001Z Brassica rapa HOM05D007031 ORTHO05D008815 4.3e-27 124.8 80 72.5
CiPaw.11G153700 Carya illinoinensis HOM05D007031 ORTHO05D008815 5.6e-27 124.4 80 71.2
vmacro16391 Vaccinium macrocarpon HOM05D007031 ORTHO05D008815 5.6e-27 124.4 82 73.2
Migut.E00966 Erythranthe guttata HOM05D007031 ORTHO05D008815 1.2e-26 123.2 79 68.4
THA.LOC104815489 Tarenaya hassleriana HOM05D007031 ORTHO05D008815 1.2e-26 123.2 82 73.2
DCAR_027778 Daucus carota HOM05D007031 ORTHO05D008815 1.6e-26 122.9 80 68.8
Migut.E01683 Erythranthe guttata HOM05D007031 ORTHO05D008815 1.6e-26 122.9 79 68.4
AL7G38260 Arabidopsis lyrata HOM05D007031 ORTHO05D008815 2.1e-26 122.5 85 70.6
Carub.0007s2484 Capsella rubella HOM05D007031 ORTHO05D008815 2.8e-26 122.1 85 70.6
ECA232G3888 Erigeron canadensis HOM05D007031 ORTHO05D008815 3.6e-26 121.7 77 71.4
AL7G38210 Arabidopsis lyrata HOM05D007031 ORTHO05D008815 6.1e-26 120.9 85 69.4
AT4G16566 Arabidopsis thaliana HOM05D007031 ORTHO05D008815 6.1e-26 120.9 83 71.1
Nitab4.5_0000712g0190 Nicotiana tabacum HOM05D007031 ORTHO05D008815 1.0e-25 120.2 131 50.4
unitig_699.g19776 Utricularia gibba HOM05D007031 ORTHO05D008815 5.2e-25 117.9 79 67.1
EL10Ac5g13074 Beta vulgaris HOM05D007031 ORTHO05D008815 1.5e-24 116.3 80 66.2
THA.LOC104815507 Tarenaya hassleriana HOM05D007031 ORTHO05D008815 2.6e-24 115.5 76 73.7
Os04g0535400 Oryza sativa ssp. japonica HOM05D007031 ORTHO05D008815 3.4e-24 115.2 77 66.2
MD04G1063700 Malus domestica HOM05D007031 ORTHO05D008815 5.7e-24 114.4 52 94.2
Thhalv10026497m.g Eutrema salsugineum HOM05D007031 ORTHO05D008815 7.5e-24 114.0 79 68.4
Sp7g15180 Schrenkiella parvula HOM05D007031 ORTHO05D008815 2.2e-23 112.5 93 63.4
Zm00001eb427450 Zea mays HOM05D007031 ORTHO05D008815 2.9e-23 112.1 77 62.3
BcaNung02861 Brassica carinata HOM05D007031 ORTHO05D008815 3.7e-23 111.7 83 65.1
Haze_07923 Corylus avellana HOM05D007031 ORTHO05D008815 3.2e-22 108.6 55 83.6
Oeu062969.1 Olea europaea HOM05D007031 ORTHO05D008815 1.9e-19 99.4 56 76.8
VMungo1215G1202 Vigna mungo HOM05D007031 ORTHO05D008815 4.3e-19 98.2 50 86.0
Sabra03G0047000 Salix brachista HOM05D007031 ORTHO05D008815 7.3e-19 97.4 54 75.9
Pp3c5_26880 Physcomitrium patens HOM05D007031 ORTHO05D008815 1.1e-17 93.6 86 50.0
SMO134G0120 Selaginella moellendorffii HOM05D000076 ORTHO05D001279 4.4e-16 88.2 75 49.3
SMO274G0074 Selaginella moellendorffii HOM05D007031 ORTHO05D008815 4.4e-16 88.2 75 49.3
BolC7t45328H Brassica oleracea HOM05D007031 ORTHO05D008815 1.3e-15 86.7 66 62.1
AUR62007512 Chenopodium quinoa HOM05D007031 ORTHO05D008815 2.2e-15 85.9 51 70.6
C01p26150 Brassica napus HOM05D007031 ORTHO05D008815 2.9e-15 85.5 56 67.9
Manes.02G039100 Manihot esculenta HOM05D007031 ORTHO05D008815 2.9e-15 85.5 51 70.6
A01p20650 Brassica napus HOM05D007031 ORTHO05D008815 3.7e-15 85.1 53 71.7
AUR62042788 Chenopodium quinoa HOM05D007031 ORTHO05D008815 4.9e-15 84.7 51 68.6
Prupe.5G068700 Prunus persica HOM05D007031 ORTHO05D008815 5.4e-14 81.3 80 52.5
FAN02G0786 Fragaria x ananassa HOM05D007031 ORTHO05D008815 1.3e-12 76.6 38 89.5
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 3.9e-12 75.1 51 66.7
MCO15G691 Micromonas commoda HOM05D007031 ORTHO05D008815 3.9e-12 75.1 80 51.2
Pp3c6_3420 Physcomitrium patens HOM05D029721 ORTHO05D008815 3.9e-12 75.1 46 67.4
BcaC06g33496 Brassica carinata HOM05D007031 ORTHO05D008815 1.5e-11 73.2 51 64.7
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 1.9e-11 72.8 52 65.4
Cre03.g169200 Chlamydomonas reinhardtii HOM05D007031 ORTHO05D008815 4.3e-11 71.6 60 50.0
SalBow6G3941 Salvia bowleyana HOM05D007031 ORTHO05D008815 2.3e-09 65.9 48 62.5
Nitab4.5_0002225g0110 Nicotiana tabacum HOM05D007031 ORTHO05D008815 3.1e-09 65.5 99 44.4


User provided reference genes

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