Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 4.6e-123 444.5 214 100.0
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 4.2e-116 421.4 214 95.3
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 4.2e-100 368.2 184 97.3
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 4.2e-100 368.2 184 97.3
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 5.5e-92 341.3 185 91.4
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 3.1e-79 298.9 184 80.4
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 3.1e-79 298.9 172 83.1
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.2e-78 297.0 202 74.8
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.2e-78 297.0 182 78.0
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 2.0e-78 296.2 189 75.7
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 5.9e-78 294.7 189 76.7
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 1.7e-77 293.1 182 77.5
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 1.7e-77 293.1 187 74.9
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 2.2e-77 292.7 185 77.8
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 5.0e-77 291.6 198 74.2
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 6.5e-77 291.2 189 75.1
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 1.1e-76 290.4 185 78.9
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.4e-76 290.0 168 83.3
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 1.9e-76 289.7 184 77.7
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 1.9e-76 289.7 183 78.1
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 2.5e-76 289.3 184 78.3
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 1.2e-75 287.0 189 76.2
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 1.2e-75 287.0 189 75.1
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 1.6e-75 286.6 169 81.7
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.6e-75 286.6 190 75.8
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 2.1e-75 286.2 182 75.8
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 3.6e-75 285.4 181 76.2
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 1.0e-74 283.9 182 75.3
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 1.8e-74 283.1 161 82.6
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 2.3e-74 282.7 183 73.8
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 3.9e-74 282.0 217 67.7
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 6.7e-74 281.2 180 76.7
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 2.0e-73 279.6 175 76.0
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 2.6e-73 279.3 183 72.7
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 4.4e-73 278.5 186 74.2
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 4.4e-73 278.5 193 71.0
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 5.7e-73 278.1 184 75.0
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 5.7e-73 278.1 175 76.6
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 7.4e-73 277.7 184 73.4
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 9.7e-73 277.3 184 70.7
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.7e-72 276.6 184 74.5
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 1.7e-72 276.6 222 66.7
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.7e-72 276.6 184 74.5
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 2.8e-72 275.8 184 73.9
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 3.7e-72 275.4 151 84.1
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 3.7e-72 275.4 146 84.2
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 3.7e-72 275.4 188 68.1
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 4.8e-72 275.0 184 73.9
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 4.8e-72 275.0 188 68.1
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 6.3e-72 274.6 178 74.2
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 6.3e-72 274.6 156 81.4
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 8.2e-72 274.2 156 80.8
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 1.1e-71 273.9 194 73.2
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 1.1e-71 273.9 167 77.8
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 1.1e-71 273.9 180 73.3
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 1.4e-71 273.5 178 74.2
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 1.8e-71 273.1 164 78.7
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 1.8e-71 273.1 167 78.4
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 3.1e-71 272.3 166 77.1
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 4.1e-71 271.9 150 84.0
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 5.3e-71 271.6 195 70.3
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 5.3e-71 271.6 184 71.7
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 9.1e-71 270.8 146 83.6
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 9.1e-71 270.8 172 76.2
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.2e-70 270.4 182 70.3
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 2.0e-70 269.6 177 75.1
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 2.0e-70 269.6 147 83.0
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 2.6e-70 269.2 147 83.7
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 3.5e-70 268.9 155 80.6
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 3.5e-70 268.9 155 80.6
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 1.3e-69 266.9 180 69.4
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 5.0e-69 265.0 233 61.8
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 5.0e-69 265.0 145 79.3
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 6.5e-69 264.6 179 70.9
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 8.5e-69 264.2 211 63.0
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.9e-68 263.1 194 63.9
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 2.5e-68 262.7 189 67.2
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 3.2e-68 262.3 173 75.1
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 2.1e-67 259.6 142 81.0
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 1.4e-66 256.9 145 80.0
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 6.7e-66 254.6 177 66.7
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 6.7e-66 254.6 156 72.4
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.6e-65 252.7 141 77.3
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 5.7e-65 251.5 142 76.1
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 8.2e-64 247.7 174 67.8
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 2.7e-62 242.7 143 74.1
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 3.8e-61 238.8 140 72.1
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 5.0e-61 238.4 140 75.0
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 8.5e-61 237.7 185 61.6
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 1.1e-60 237.3 160 72.5
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 1.1e-60 237.3 126 85.7
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 3.2e-60 235.7 158 72.8
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 5.5e-60 235.0 160 71.2
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 2.1e-59 233.0 160 73.1
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 3.6e-59 232.3 172 68.0
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 6.1e-59 231.5 140 77.9
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 1.8e-58 229.9 129 82.9
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 2.3e-58 229.6 159 70.4
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 3.4e-57 225.7 124 83.1
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 1.3e-56 223.8 119 84.0
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 6.3e-56 221.5 127 77.2
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 5.4e-55 218.4 169 65.1
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 2.7e-54 216.1 166 64.5
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 1.9e-52 209.9 152 71.7
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 5.5e-52 208.4 120 80.0
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 3.6e-51 205.7 140 64.3
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 4.7e-51 205.3 150 68.0
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 8.3e-48 194.5 118 78.0
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 2.0e-46 189.9 131 69.5
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 3.5e-46 189.1 185 54.6
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.3e-45 187.2 99 83.8
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 7.5e-41 171.4 142 54.9
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 8.3e-40 167.9 149 62.4
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.1e-39 167.5 162 51.2
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.4e-39 167.2 153 53.6
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 3.2e-39 166.0 120 65.8
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.6e-38 163.7 93 83.9
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 3.9e-37 159.1 182 47.3
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 3.3e-36 156.0 182 45.6
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 3.1e-34 149.4 89 75.3
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.5e-33 147.1 205 41.0
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 7.5e-33 144.8 171 46.8
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 4.6e-30 135.6 157 47.1
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 3.3e-28 129.4 85 68.2
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 3.6e-27 125.9 59 89.8
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 6.2e-27 125.2 72 83.3
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 1.2e-25 120.9 149 43.0
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 5.8e-25 118.6 70 81.4
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 5.4e-23 112.1 53 92.5
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 2.1e-22 110.2 187 41.7
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 6.6e-21 105.1 118 44.9
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 9.2e-15 84.7 77 55.8
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 6.0e-14 82.0 123 44.7
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 1.9e-12 77.0 145 31.0
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 5.2e-10 68.9 141 32.6
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 5.8e-09 65.5 31 83.9
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 7.6e-09 65.1 91 48.4
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 2.4e-07 60.1 154 29.2
EL10Ac3g07438 Beta vulgaris HOM05D000371 ORTHO05D013217 4.6e-06 55.8 62 48.4


User provided reference genes

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