Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1389 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.2e-38 161.8 79 100.0
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.6e-17 92.4 50 94.0
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.6e-17 92.4 50 94.0
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 4.8e-17 90.9 50 92.0
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 6.2e-17 90.5 50 92.0
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 3.1e-16 88.2 49 91.8
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 1.3e-14 82.8 50 82.0
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 6.4e-14 80.5 50 80.0
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 1.1e-10 69.7 48 64.6
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 9.6e-10 66.6 49 55.1
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 1.3e-09 66.2 49 59.2
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 1.3e-09 66.2 49 59.2
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 1.3e-09 66.2 48 60.4
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 2.1e-09 65.5 49 57.1
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 2.8e-09 65.1 49 55.1
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 2.8e-09 65.1 48 58.3
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 3.7e-09 64.7 48 58.3
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 6.2e-09 63.9 48 58.3
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 8.1e-09 63.5 47 61.7
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 8.1e-09 63.5 48 56.2
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 1.1e-08 63.2 48 56.2
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 1.1e-08 63.2 47 55.3
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.1e-08 63.2 47 57.4
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 2.4e-08 62.0 47 59.6
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 2.4e-08 62.0 49 53.1
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 3.1e-08 61.6 47 55.3
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 5.3e-08 60.8 48 58.3
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 6.9e-08 60.5 53 52.8
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 6.9e-08 60.5 47 51.1
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 6.9e-08 60.5 47 53.2
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 6.9e-08 60.5 49 51.0
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 9.0e-08 60.1 47 55.3
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 1.2e-07 59.7 47 51.1
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 1.2e-07 59.7 47 55.3
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 1.5e-07 59.3 48 54.2
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 1.5e-07 59.3 48 54.2
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 1.5e-07 59.3 47 55.3
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 2.0e-07 58.9 48 54.2
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 2.0e-07 58.9 48 56.2
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 2.0e-07 58.9 50 48.0
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 2.6e-07 58.5 47 51.1
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 2.6e-07 58.5 48 54.2
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 2.6e-07 58.5 48 54.2
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 2.6e-07 58.5 47 53.2
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 2.6e-07 58.5 47 53.2
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 3.4e-07 58.2 47 53.2
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 4.5e-07 57.8 49 53.1
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 4.5e-07 57.8 47 51.1
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 5.8e-07 57.4 47 55.3
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 7.6e-07 57.0 48 50.0
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 7.6e-07 57.0 48 52.1
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 9.9e-07 56.6 46 54.3
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 1.3e-06 56.2 47 53.2
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 1.3e-06 56.2 44 52.3
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 1.7e-06 55.8 48 54.2
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 2.2e-06 55.5 49 46.9
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 2.9e-06 55.1 47 55.3
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 3.8e-06 54.7 47 48.9
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 3.8e-06 54.7 47 48.9
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 4.9e-06 54.3 50 44.0
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 6.4e-06 53.9 49 51.0
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 8.4e-06 53.5 47 51.1
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 8.4e-06 53.5 47 48.9
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 8.4e-06 53.5 47 51.1
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 8.4e-06 53.5 47 51.1


User provided reference genes

Program Settings