Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1381 Fragaria x ananassa HOM05D001739 ORTHO05D004575 5.7e-124 447.6 224 100.0
FAN08G1830 Fragaria x ananassa HOM05D001739 ORTHO05D004575 3.9e-117 424.9 224 96.0
FvH4_5g06040 Fragaria vesca HOM05D001739 ORTHO05D029422 3.6e-94 348.6 224 80.8
FAN18G1935 Fragaria x ananassa HOM05D001739 ORTHO05D029422 8.8e-93 344.0 224 80.4
FAN18G0943 Fragaria x ananassa HOM05D001739 ORTHO05D029422 1.0e-85 320.5 224 79.0
FvH4_5g05990 Fragaria vesca HOM05D001739 ORTHO05D029422 5.2e-85 318.2 224 78.6
FvH4_1g09210 Fragaria vesca HOM05D001739 ORTHO05D004575 9.0e-29 131.3 125 57.6
FAN19G0975 Fragaria x ananassa HOM05D001739 ORTHO05D004575 7.6e-28 128.3 128 57.8
FAN26G0091 Fragaria x ananassa HOM05D001739 ORTHO05D004575 7.6e-28 128.3 125 56.0
FAN26G1120 Fragaria x ananassa HOM05D001739 ORTHO05D004575 7.6e-28 128.3 125 56.0
Prupe.7G193800 Prunus persica HOM05D001739 ORTHO05D004575 1.3e-27 127.5 128 56.2
FAN23G1590 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.7e-27 127.1 125 56.0
FAN28G0236 Fragaria x ananassa HOM05D001739 ORTHO05D004575 2.2e-27 126.7 125 56.0
FAN28G1182 Fragaria x ananassa HOM05D001739 ORTHO05D004575 2.2e-27 126.7 125 56.0
RcHm_v2.0_Chr2g0094991 Rosa chinensis HOM05D001739 ORTHO05D029616 2.9e-27 126.3 238 41.2
Ciclev10023308m.g Citrus clementina HOM05D001739 ORTHO05D004575 8.4e-27 124.8 130 52.3
MD15G1221900 Malus domestica HOM05D001739 ORTHO05D004575 8.4e-27 124.8 167 46.7
MD02G1099100 Malus domestica HOM05D001739 ORTHO05D004575 1.1e-26 124.4 167 45.5
RcHm_v2.0_Chr2g0095731 Rosa chinensis HOM05D001739 ORTHO05D004575 1.9e-26 123.6 125 54.4
Thecc.09G071800 Theobroma cacao HOM05D001739 ORTHO05D004575 2.5e-26 123.2 120 53.3
COL.COLO4_21223 Corchorus olitorius HOM05D001739 ORTHO05D004575 3.2e-26 122.9 119 56.3
RcHm_v2.0_Chr2g0095061 Rosa chinensis HOM05D001739 ORTHO05D029616 3.2e-26 122.9 237 40.1
Duzib168G0208 Durio zibethinus HOM05D001739 ORTHO05D004575 4.2e-26 122.5 120 54.2
Prupe.6G204500 Prunus persica HOM05D001739 ORTHO05D004575 4.2e-26 122.5 128 54.7
Gohir.A07G016500 Gossypium hirsutum HOM05D001739 ORTHO05D004575 9.3e-26 121.3 119 52.9
Gohir.D07G016300 Gossypium hirsutum HOM05D001739 ORTHO05D004575 9.3e-26 121.3 119 52.9
Gorai.001G017100 Gossypium raimondii HOM05D001739 ORTHO05D004575 9.3e-26 121.3 119 52.9
Dinv25520 Davidia involucrata HOM05D001739 ORTHO05D004575 1.2e-25 120.9 128 53.1
Rhsim05G0003800 Rhododendron simsii HOM05D001739 ORTHO05D004575 1.6e-25 120.6 128 52.3
QL11p002157 Quercus lobata HOM05D001739 ORTHO05D004575 2.1e-25 120.2 151 48.3
Manes.16G091500 Manihot esculenta HOM05D001739 ORTHO05D004575 2.7e-25 119.8 128 54.7
vmacro17113 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 2.7e-25 119.8 128 51.6
TWI32G0648 Tripterygium wilfordii HOM05D001739 ORTHO05D004575 3.5e-25 119.4 122 54.1
Potri.006G137900 Populus trichocarpa HOM05D001739 ORTHO05D004575 4.6e-25 119.0 125 52.0
CSS0017458 Camellia sinensis var. sinensis HOM05D001739 ORTHO05D004575 6.0e-25 118.6 128 50.8
Sabra18G0055900 Salix brachista HOM05D001739 ORTHO05D004575 6.0e-25 118.6 125 50.4
TPR.G18558 Trifolium pratense HOM05D001739 ORTHO05D004575 6.0e-25 118.6 125 49.6
Prupe.7G186700 Prunus persica HOM05D001739 ORTHO05D004575 7.9e-25 118.2 218 37.6
vmacro23084 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 7.9e-25 118.2 128 50.8
Medtr1g072890 Medicago truncatula HOM05D001739 ORTHO05D004575 1.3e-24 117.5 125 50.4
Atru.chr7.1752 Acer truncatum HOM05D001739 ORTHO05D004575 2.3e-24 116.7 129 51.2
vmacro17095 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 3.9e-24 115.9 128 50.0
CAN.G63.12 Capsicum annuum HOM05D001739 ORTHO05D004575 5.1e-24 115.5 174 43.1
CiPaw.03G202600 Carya illinoinensis HOM05D001739 ORTHO05D004575 5.1e-24 115.5 125 50.4
Cfa002954 Carpinus fangiana HOM05D001739 ORTHO05D004575 6.7e-24 115.2 127 52.0
MSTRG.5982 Avicennia marina HOM05D001739 ORTHO05D004575 8.7e-24 114.8 122 51.6
Glyma.13G112900 Glycine max HOM05D001739 ORTHO05D004575 1.1e-23 114.4 119 50.4
PGR142G3865 Punica granatum HOM05D001739 ORTHO05D004575 1.5e-23 114.0 119 51.3
Nitab4.5_0001565g0110 Nicotiana tabacum HOM05D001739 ORTHO05D004575 1.9e-23 113.6 128 49.2
Hma1.2p1_0169F.1_g074380 Hydrangea macrophylla HOM05D001739 ORTHO05D004575 3.3e-23 112.8 125 48.8
Lsat_1_v5_gn_7_35381 Lactuca sativa HOM05D001739 ORTHO05D004575 3.3e-23 112.8 128 49.2
Peaxi162Scf00191g01112 Petunia axillaris HOM05D001739 ORTHO05D004575 3.3e-23 112.8 129 47.3
Sopen07g021980 Solanum pennellii HOM05D001739 ORTHO05D004575 3.3e-23 112.8 129 48.8
Solyc07g042380.4 Solanum lycopersicum HOM05D001739 ORTHO05D004575 4.3e-23 112.5 128 48.4
TPR.G34376 Trifolium pratense HOM05D001739 ORTHO05D004575 5.7e-23 112.1 128 46.1
Ca_09790_v3 Cicer arietinum L. HOM05D001739 ORTHO05D004575 7.4e-23 111.7 125 47.2
Lj4g0016027 Lotus japonicus HOM05D001739 ORTHO05D004575 7.4e-23 111.7 125 48.0
Medtr1g072970 Medicago truncatula HOM05D001739 ORTHO05D004575 7.4e-23 111.7 125 48.0
Nitab4.5_0007773g0020 Nicotiana tabacum HOM05D001739 ORTHO05D004575 7.4e-23 111.7 128 49.2
Psat6g134600 Pisum sativum HOM05D001739 ORTHO05D004575 7.4e-23 111.7 125 49.6
FAN10G4203 Fragaria x ananassa HOM05D001739 ORTHO05D029616 9.6e-23 111.3 156 42.9
Glyma.17G046900 Glycine max HOM05D001739 ORTHO05D004575 2.1e-22 110.2 119 48.7
FvH4_7g02570 Fragaria vesca HOM05D001739 ORTHO05D029616 2.8e-22 109.8 155 42.6
Lalb_Chr12g0200311 Lupinus albus HOM05D001739 ORTHO05D004575 3.7e-22 109.4 125 48.8
Phvul.003G128600 Phaseolus vulgaris HOM05D001739 ORTHO05D004575 3.7e-22 109.4 119 50.4
Sed0021617 Sechium edule HOM05D001739 ORTHO05D004575 3.7e-22 109.4 127 50.4
AL4G30320 Arabidopsis lyrata HOM05D001739 ORTHO05D004575 4.8e-22 109.0 129 51.2
Sp4g16630 Schrenkiella parvula HOM05D001739 ORTHO05D004575 4.8e-22 109.0 119 53.8
FAN26G0455 Fragaria x ananassa HOM05D001739 ORTHO05D004575 6.3e-22 108.6 129 48.1
AT2G34357 Arabidopsis thaliana HOM05D001739 ORTHO05D004575 8.2e-22 108.2 120 52.5
DCAR_003861 Daucus carota HOM05D001739 ORTHO05D004575 8.2e-22 108.2 131 49.6
PSO421G0331 Papaver somniferum HOM05D001739 ORTHO05D004575 8.2e-22 108.2 125 49.6
arahy.Tifrunner.gnm1.ann1.9HZQ4R Arachis hypogaea HOM05D001739 ORTHO05D004575 1.1e-21 107.8 119 50.4
FvH4_1g13570 Fragaria vesca HOM05D001739 ORTHO05D004575 1.1e-21 107.8 156 42.9
VMungo1215G0229 Vigna mungo HOM05D001739 ORTHO05D004575 1.4e-21 107.5 119 47.1
Cpa.g.sc32.6 Carica papaya HOM05D001739 ORTHO05D004575 1.8e-21 107.1 120 49.2
FvH4_1g08670 Fragaria vesca HOM05D001739 ORTHO05D025407 1.8e-21 107.1 173 39.3
DCAR_005064 Daucus carota HOM05D001739 ORTHO05D004575 2.4e-21 106.7 131 48.9
ECA240G3214 Erigeron canadensis HOM05D001739 ORTHO05D004575 2.4e-21 106.7 119 44.5
Lj7C690T11 Lonicera japonica HOM05D001739 ORTHO05D004575 2.4e-21 106.7 119 48.7
BcaB02g09558 Brassica carinata HOM05D001739 ORTHO05D004575 3.1e-21 106.3 119 52.1
PSO104G0064 Papaver somniferum HOM05D001739 ORTHO05D004575 3.1e-21 106.3 125 48.8
CARHR128440 Cardamine hirsuta HOM05D001739 ORTHO05D004575 4.1e-21 105.9 124 54.0
FvH4_1g13610 Fragaria vesca HOM05D001739 ORTHO05D004575 4.1e-21 105.9 129 47.3
FAN19G0770 Fragaria x ananassa HOM05D001739 ORTHO05D004575 4.1e-21 105.9 129 47.3
arahy.Tifrunner.gnm1.ann1.SDZ4E8 Arachis hypogaea HOM05D001739 ORTHO05D004575 5.3e-21 105.5 119 49.6
A03p19100 Brassica napus HOM05D001739 ORTHO05D004575 5.3e-21 105.5 119 52.9
FAN26G3315 Fragaria x ananassa HOM05D001739 ORTHO05D025407 5.3e-21 105.5 173 39.3
THA.LOC104809049 Tarenaya hassleriana HOM05D001739 ORTHO05D004575 5.3e-21 105.5 127 46.5
BcaC02g11500 Brassica carinata HOM05D001739 ORTHO05D004575 6.9e-21 105.1 119 54.6
BcaC02g11606 Brassica carinata HOM05D001739 ORTHO05D004575 6.9e-21 105.1 119 53.8
A05p11320 Brassica napus HOM05D001739 ORTHO05D004575 6.9e-21 105.1 119 53.8
C03p22320 Brassica napus HOM05D001739 ORTHO05D004575 6.9e-21 105.1 119 52.9
C04p13350 Brassica napus HOM05D001739 ORTHO05D004575 6.9e-21 105.1 119 53.8
BolC3t14614H Brassica oleracea HOM05D001739 ORTHO05D004575 6.9e-21 105.1 119 52.9
BraA05t20081Z Brassica rapa HOM05D001739 ORTHO05D004575 6.9e-21 105.1 119 53.8
FAN26G1945 Fragaria x ananassa HOM05D001739 ORTHO05D035581 9.0e-21 104.8 172 39.5
BcaC01g05798 Brassica carinata HOM05D001739 ORTHO05D004575 1.2e-20 104.4 119 53.8
HanXRQChr09g0273551 Helianthus annuus HOM05D001739 ORTHO05D004575 1.2e-20 104.4 119 47.9
BraA03t11167Z Brassica rapa HOM05D001739 ORTHO05D004575 1.5e-20 104.0 119 52.9
BcaB01g03896 Brassica carinata HOM05D001739 ORTHO05D004575 2.0e-20 103.6 119 52.9
C04p14660 Brassica napus HOM05D001739 ORTHO05D004575 2.0e-20 103.6 119 53.8
BolC4t23047H Brassica oleracea HOM05D001739 ORTHO05D004575 2.0e-20 103.6 119 53.8
Eucgr.C00777 Eucalyptus grandis HOM05D001739 ORTHO05D004575 2.0e-20 103.6 128 44.5
Lalb_Chr13g0299281 Lupinus albus HOM05D001739 ORTHO05D004575 2.0e-20 103.6 125 44.8
Thhalv10016153m.g Eutrema salsugineum HOM05D001739 ORTHO05D004575 2.6e-20 103.2 129 47.3
GSVIVG01023097001 Vitis vinifera HOM05D001739 ORTHO05D004575 3.4e-20 102.8 119 47.1
MELO3C015548.2 Cucumis melo HOM05D001739 ORTHO05D004575 4.5e-20 102.4 125 50.4
RcHm_v2.0_Chr2g0095131 Rosa chinensis HOM05D001739 ORTHO05D015654 4.5e-20 102.4 179 38.5
CANSAT56G3462 Cannabis sativa HOM05D001739 ORTHO05D004575 5.9e-20 102.1 125 44.0
ClCG03G014800 Citrullus lanatus HOM05D001739 ORTHO05D004575 5.9e-20 102.1 125 50.4
CsaV3_1G041350 Cucumis sativus L. HOM05D001739 ORTHO05D004575 7.6e-20 101.7 125 48.8
HanXRQChr04g0122371 Helianthus annuus HOM05D001739 ORTHO05D004575 7.6e-20 101.7 119 47.1
Psat7g002920 Pisum sativum HOM05D001739 ORTHO05D004575 7.6e-20 101.7 125 44.8
FvH4_1g08660 Fragaria vesca HOM05D001739 ORTHO05D025407 1.0e-19 101.3 173 38.7
Nn8g40294 Nelumbo nucifera HOM05D001739 ORTHO05D004575 1.0e-19 101.3 125 44.0
Carub.0004s1602 Capsella rubella HOM05D001739 ORTHO05D004575 2.2e-19 100.1 121 49.6
Aa31LG9G14080 Aethionema arabicum HOM05D001739 ORTHO05D004575 2.9e-19 99.8 120 50.0
TPR.G13945 Trifolium pratense HOM05D001739 ORTHO05D004575 3.8e-19 99.4 125 46.4
TAR383G0739 Trochodendron aralioides HOM05D001739 ORTHO05D004575 6.5e-19 98.6 119 46.2
CDE12G0121 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 8.5e-19 98.2 158 41.1
Sed0004150 Sechium edule HOM05D001739 ORTHO05D004575 8.5e-19 98.2 128 49.2
unitig_744.g24652 Utricularia gibba HOM05D001739 ORTHO05D004575 1.9e-18 97.1 131 45.0
AUR62025277 Chenopodium quinoa HOM05D001739 ORTHO05D004575 4.2e-18 95.9 136 41.2
arahy.Tifrunner.gnm1.ann1.7457H2 Arachis hypogaea HOM05D001739 ORTHO05D004575 7.2e-18 95.1 119 43.7
Cc06_g12580 Coffea canephora HOM05D001739 ORTHO05D004575 7.2e-18 95.1 119 42.9
ATR0681G226 Amborella trichopoda HOM05D001739 ORTHO05D004575 9.3e-18 94.7 131 40.5
SGA_v2.0_scaffold281G46906 Striga asiatica HOM05D001739 ORTHO05D004575 1.2e-17 94.4 119 46.2
arahy.Tifrunner.gnm1.ann1.WW7XLJ Arachis hypogaea HOM05D001739 ORTHO05D004575 1.6e-17 94.0 119 43.7
CDE04G0230 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 2.1e-17 93.6 127 39.4
Ah.09g229240 Amaranthus hybridus HOM05D001739 ORTHO05D004575 1.0e-16 91.3 121 43.8
EL10Ac8g19018 Beta vulgaris HOM05D001739 ORTHO05D004575 1.0e-16 91.3 134 41.0
FvH4_1g08691 Fragaria vesca HOM05D001739 ORTHO05D015654 1.3e-16 90.9 161 39.1
AUR62019633 Chenopodium quinoa HOM05D001739 ORTHO05D004575 2.3e-16 90.1 128 40.6
AUR62039592 Chenopodium quinoa HOM05D001739 ORTHO05D004575 2.3e-16 90.1 127 41.7
FvH4_1g08730 Fragaria vesca HOM05D001739 ORTHO05D015654 3.9e-16 89.4 154 40.3
AUR62028280 Chenopodium quinoa HOM05D001739 ORTHO05D004575 5.1e-16 89.0 128 41.4
FAN26G0106 Fragaria x ananassa HOM05D001739 ORTHO05D015654 5.1e-16 89.0 169 38.5
FAN26G3321 Fragaria x ananassa HOM05D001739 ORTHO05D015654 5.1e-16 89.0 169 38.5
FAN19G2992 Fragaria x ananassa HOM05D001739 ORTHO05D015654 8.7e-16 88.2 168 37.5
FAN19G1672 Fragaria x ananassa HOM05D001739 ORTHO05D015654 1.9e-15 87.0 168 37.5
FAN28G3010 Fragaria x ananassa HOM05D001739 ORTHO05D207861 1.9e-15 87.0 135 43.0
FAN23G2998 Fragaria x ananassa HOM05D001739 ORTHO05D198978 3.3e-15 86.3 168 37.5
Aqoxy7G03292 Aquilegia oxysepala HOM05D001739 ORTHO05D004575 4.3e-15 85.9 119 41.2
HPP92_004359 Vanilla planifolia HOM05D001739 ORTHO05D004575 4.3e-15 85.9 127 37.8
SHI02768 Sapria himalayana HOM05D001739 ORTHO05D004575 5.7e-15 85.5 121 44.6
Pp3c2_3190 Physcomitrium patens HOM05D001739 ORTHO05D004575 1.6e-14 84.0 128 35.2
Mapoly0061s0020 Marchantia polymorpha HOM05D001739 ORTHO05D004575 4.8e-14 82.4 174 30.5
Os02g0782100 Oryza sativa ssp. japonica HOM05D001739 ORTHO05D004575 1.1e-13 81.3 128 38.3
FAN26G3373 Fragaria x ananassa HOM05D001739 ORTHO05D015654 1.8e-13 80.5 177 35.0
Hund23253 Selenicereus undatus HOM05D001739 ORTHO05D004575 1.8e-13 80.5 129 37.2
CAN.G333.15 Capsicum annuum HOM05D001739 ORTHO05D004575 4.1e-13 79.3 98 45.9
FAN26G1219 Fragaria x ananassa HOM05D001739 ORTHO05D210162 6.9e-13 78.6 147 38.8
Zm00001eb257110 Zea mays HOM05D001739 ORTHO05D004575 7.7e-12 75.1 129 35.7
FAN23G2122 Fragaria x ananassa HOM05D001739 ORTHO05D035581 2.9e-11 73.2 140 37.9
Sc24g0001530 Simmondsia chinensis HOM05D001739 ORTHO05D004575 6.5e-11 72.0 128 37.5
AagrBONN_evm.TU.Sc2ySwM_117.3958 Anthoceros agrestis HOM05D001739 ORTHO05D004575 4.2e-10 69.3 128 28.9
Sc18g0003470 Simmondsia chinensis HOM05D001739 ORTHO05D004575 4.2e-10 69.3 125 36.8
FvH4_1g21223 Fragaria vesca HOM05D001739 ORTHO05D198449 1.4e-08 64.3 98 49.0
SEGI_37036 Sequoiadendron giganteum HOM05D001739 ORTHO05D004575 3.9e-08 62.8 89 39.3
FAN26G3327 Fragaria x ananassa HOM05D001739 ORTHO05D015654 5.1e-08 62.4 133 38.3
SEGI_16086 Sequoiadendron giganteum HOM05D001739 ORTHO05D004575 3.3e-07 59.7 108 32.4
SMO361G0459 Selaginella moellendorffii HOM05D001739 ORTHO05D004575 1.3e-06 57.8 147 29.9


User provided reference genes

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