Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.7e-103 379.4 200 100.0
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 7.1e-102 374.0 200 98.5
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 1.2e-101 373.2 200 98.5
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.6e-93 346.3 185 98.4
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 1.0e-92 343.6 200 90.5
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 5.9e-88 327.8 232 79.3
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 4.8e-82 308.1 201 80.6
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 2.6e-80 302.4 201 80.1
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 7.7e-72 274.2 200 72.5
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 1.3e-71 273.5 200 71.0
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 2.5e-70 269.2 200 72.0
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 4.2e-70 268.5 199 71.9
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 4.7e-69 265.0 200 68.0
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 5.2e-68 261.5 200 68.5
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 5.2e-68 261.5 200 67.0
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 8.8e-68 260.8 201 69.2
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 1.1e-67 260.4 202 67.3
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 1.5e-67 260.0 200 66.0
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 9.7e-67 257.3 200 67.5
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 2.4e-65 252.7 198 65.2
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 7.0e-65 251.1 201 67.7
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 7.0e-65 251.1 201 67.7
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 1.6e-64 250.0 200 64.5
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 2.0e-64 249.6 201 66.7
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 2.0e-64 249.6 200 64.5
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 4.5e-64 248.4 200 63.0
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 3.8e-63 245.4 199 66.3
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 5.0e-63 245.0 198 62.6
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 1.1e-62 243.8 199 64.8
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 1.9e-62 243.0 200 64.5
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 7.2e-62 241.1 208 63.0
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 9.4e-62 240.7 164 79.3
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.6e-61 240.0 185 68.1
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 1.0e-60 237.3 201 63.2
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 1.4e-60 236.9 206 59.7
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.8e-60 236.5 185 68.1
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 8.8e-60 234.2 192 64.1
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 1.5e-59 233.4 198 60.1
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 5.7e-59 231.5 199 62.3
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 9.7e-59 230.7 206 58.3
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 1.7e-58 229.9 200 60.5
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 2.8e-58 229.2 197 62.4
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 3.7e-58 228.8 239 54.4
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 3.7e-58 228.8 199 59.8
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 4.8e-58 228.4 200 61.0
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 1.1e-57 227.3 201 60.7
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.1e-57 227.3 199 59.8
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 3.1e-57 225.7 200 57.5
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 3.1e-57 225.7 201 60.7
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 9.1e-57 224.2 185 62.2
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 1.6e-56 223.4 199 60.8
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 2.0e-56 223.0 186 61.3
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 7.7e-56 221.1 201 59.2
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 1.7e-55 219.9 188 59.6
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 5.0e-55 218.4 200 59.0
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 8.5e-55 217.6 202 58.9
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 1.1e-54 217.2 200 58.0
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 1.5e-54 216.9 170 69.4
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 1.9e-54 216.5 200 56.0
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 4.2e-54 215.3 200 59.5
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 7.2e-54 214.5 200 60.0
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 9.4e-54 214.2 207 56.5
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 1.2e-53 213.8 200 60.0
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.6e-53 213.4 191 61.3
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 4.7e-53 211.8 197 56.9
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 4.7e-53 211.8 207 56.5
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.8e-52 209.9 198 52.5
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 6.8e-52 208.0 197 55.8
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 8.8e-52 207.6 185 60.0
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 1.5e-51 206.8 198 56.1
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 2.6e-51 206.1 198 56.6
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 1.7e-50 203.4 156 66.0
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 2.8e-50 202.6 185 59.5
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 3.7e-50 202.2 198 55.6
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 4.8e-50 201.8 182 60.4
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 6.3e-50 201.4 198 56.1
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.4e-49 200.3 185 56.8
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 2.4e-49 199.5 198 52.5
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 7.0e-49 198.0 185 56.2
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 1.6e-48 196.8 198 52.5
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 2.7e-48 196.1 198 53.0
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 4.5e-48 195.3 200 52.5
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 1.3e-47 193.7 200 52.0
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 8.6e-47 191.0 198 51.5
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 1.5e-46 190.3 200 52.0
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 3.3e-46 189.1 198 51.0
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 2.1e-45 186.4 198 50.0
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 4.7e-45 185.3 185 51.9
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 8.9e-44 181.0 147 64.6
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 3.4e-43 179.1 200 48.5
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 4.4e-43 178.7 187 53.5
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 7.5e-43 177.9 249 43.4
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.6e-40 170.2 137 61.3
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 3.5e-40 169.1 177 52.5
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 2.3e-39 166.4 205 46.3
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 1.9e-38 163.3 195 45.6
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 2.5e-38 162.9 146 58.2
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 5.2e-36 155.2 115 66.1
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 2.0e-35 153.3 186 46.2
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 9.8e-35 151.0 163 52.1
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.3e-34 150.6 131 63.4
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 2.2e-34 149.8 193 44.0
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 8.3e-34 147.9 145 57.2
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 1.8e-33 146.7 108 71.3
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 2.8e-29 132.9 158 48.7
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 6.2e-29 131.7 185 42.2
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 2.3e-28 129.8 157 43.9
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 3.1e-28 129.4 110 63.6
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.6e-27 126.3 152 47.4
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 2.6e-27 126.3 146 47.9
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 5.8e-27 125.2 109 56.9
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 2.2e-26 123.2 87 69.0
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 1.2e-24 117.5 129 49.6
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 1.7e-23 113.6 85 72.9
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 6.6e-23 111.7 185 36.2
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 4.3e-22 109.0 165 40.0
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 2.1e-21 106.7 155 41.9
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.2e-19 100.9 85 63.5
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 3.4e-19 99.4 61 73.8
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 2.3e-15 86.7 191 29.8
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 2.1e-13 80.1 110 38.2
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 5.2e-12 75.5 55 65.5
MD08G1245200 Malus domestica HOM05D006640 ORTHO05D008078 2.6e-11 73.2 38 89.5
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 4.4e-11 72.4 57 66.7
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 4.6e-08 62.4 71 46.5
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 5.6e-06 55.5 45 57.8


User provided reference genes

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