Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.2e-84 316.6 174 100.0
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 9.3e-82 307.0 174 97.7
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 9.3e-82 307.0 174 97.7
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 9.3e-82 307.0 174 97.7
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 9.6e-79 297.0 174 96.0
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 3.3e-71 271.9 167 91.0
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 1.1e-63 246.9 174 82.8
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 3.3e-63 245.4 175 82.9
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 1.5e-60 236.5 177 67.2
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.2e-57 226.9 173 75.7
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 6.1e-57 224.6 174 77.0
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 3.9e-56 221.9 174 76.4
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 1.1e-55 220.3 167 68.3
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.0e-55 219.5 173 67.6
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 4.4e-55 218.4 173 67.1
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 9.7e-55 217.2 164 67.7
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 1.8e-53 213.0 165 76.4
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 2.4e-53 212.6 174 73.6
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.1e-53 211.8 169 65.1
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 6.9e-53 211.1 167 63.5
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 6.9e-53 211.1 231 51.1
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 2.0e-52 209.5 173 67.1
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 6.5e-51 204.5 166 75.9
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 8.5e-51 204.1 167 65.9
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.4e-50 203.4 163 75.5
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 1.6e-49 199.9 174 59.2
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 3.0e-48 195.7 160 73.8
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 3.9e-48 195.3 167 70.1
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 6.7e-48 194.5 167 70.1
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 6.7e-48 194.5 167 70.1
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 8.8e-48 194.1 168 72.6
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 8.8e-48 194.1 173 68.8
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 2.0e-47 193.0 176 56.8
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 4.4e-47 191.8 175 55.4
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 7.4e-47 191.0 173 67.6
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 9.7e-47 190.7 166 59.6
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 1.3e-46 190.3 168 71.4
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.2e-46 189.5 168 60.1
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 6.3e-46 188.0 171 60.2
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.1e-45 187.2 166 57.8
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.8e-45 186.4 174 55.2
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 5.3e-45 184.9 175 55.4
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 9.1e-45 184.1 174 55.2
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 1.2e-44 183.7 164 67.1
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 1.2e-44 183.7 173 60.1
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 2.0e-44 183.0 174 62.6
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 2.6e-44 182.6 174 66.1
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 4.5e-44 181.8 176 67.6
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 5.9e-44 181.4 166 69.3
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 7.7e-44 181.0 168 55.4
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 1.0e-43 180.6 170 65.3
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 1.3e-43 180.3 174 65.5
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 1.7e-43 179.9 171 65.5
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 5.0e-43 178.3 173 53.2
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 1.1e-42 177.2 165 66.7
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 1.1e-42 177.2 165 66.7
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 1.9e-42 176.4 171 54.4
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 2.5e-42 176.0 165 58.8
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 2.5e-42 176.0 176 65.3
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 2.5e-42 176.0 176 65.3
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 2.5e-42 176.0 176 64.8
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 4.2e-42 175.3 174 62.6
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 5.5e-42 174.9 171 64.3
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 9.4e-42 174.1 169 53.3
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 1.2e-41 173.7 170 65.3
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 1.2e-41 173.7 173 64.2
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 1.2e-41 173.7 173 54.3
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.6e-41 173.3 167 53.9
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 1.6e-41 173.3 169 59.2
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 1.6e-41 173.3 175 61.1
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 2.1e-41 172.9 173 53.8
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 2.1e-41 172.9 163 66.9
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 2.7e-41 172.6 173 64.7
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 2.7e-41 172.6 171 64.3
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 2.7e-41 172.6 132 80.3
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 3.6e-41 172.2 174 56.9
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 4.7e-41 171.8 166 64.5
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 6.1e-41 171.4 174 62.1
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 1.0e-40 170.6 165 55.2
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 1.8e-40 169.9 174 60.3
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 1.8e-40 169.9 165 68.5
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 2.3e-40 169.5 166 65.1
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 3.0e-40 169.1 172 62.2
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 5.2e-40 168.3 165 63.6
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 6.7e-40 167.9 173 52.6
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 1.2e-39 167.2 129 80.6
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 1.5e-39 166.8 174 63.8
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 4.4e-39 165.2 173 62.4
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 4.4e-39 165.2 172 61.0
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 4.4e-39 165.2 174 63.8
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 5.7e-39 164.9 172 61.0
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 1.3e-38 163.7 163 63.2
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 1.7e-38 163.3 163 63.2
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 3.7e-38 162.2 165 53.9
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 4.8e-38 161.8 174 60.9
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 4.8e-38 161.8 182 48.9
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 6.3e-38 161.4 135 77.8
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 8.2e-38 161.0 167 64.7
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 1.8e-37 159.8 175 61.1
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.8e-37 159.8 173 51.4
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 2.4e-37 159.5 165 50.9
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 3.1e-37 159.1 164 51.8
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 4.1e-37 158.7 175 60.0
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 5.3e-37 158.3 166 50.6
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.2e-36 157.1 146 58.2
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.2e-36 157.1 168 50.6
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 7.7e-36 154.5 177 54.2
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 1.3e-35 153.7 162 51.9
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.3e-35 153.7 173 50.3
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 1.3e-35 153.7 173 50.3
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 2.2e-35 152.9 173 50.3
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.8e-35 152.1 173 49.7
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 3.8e-35 152.1 158 61.4
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 3.8e-35 152.1 158 61.4
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 1.5e-34 150.2 177 59.9
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 3.2e-34 149.1 111 81.1
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 5.5e-34 148.3 167 48.5
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 5.5e-34 148.3 167 48.5
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 9.4e-34 147.5 176 59.7
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 9.4e-34 147.5 121 76.0
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.6e-33 146.7 177 59.3
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 3.6e-33 145.6 176 56.2
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 3.6e-33 145.6 157 47.8
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 3.6e-33 145.6 157 47.8
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 3.6e-33 145.6 157 47.8
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 6.1e-33 144.8 176 48.9
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 1.4e-32 143.7 162 48.8
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 1.4e-32 143.7 176 59.1
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 2.3e-32 142.9 176 59.1
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 3.0e-32 142.5 108 61.1
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.0e-31 139.8 162 46.9
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 2.0e-31 139.8 169 58.0
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 2.0e-31 139.8 163 59.5
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 3.4e-31 139.0 169 58.0
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 3.4e-31 139.0 169 58.0
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 4.4e-31 138.7 169 57.4
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 4.4e-31 138.7 172 58.1
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 7.5e-31 137.9 152 61.8
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.3e-30 137.1 170 58.8
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 1.1e-29 134.0 170 56.5
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 1.0e-27 127.5 96 65.6
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 2.3e-27 126.3 163 41.7
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 2.9e-27 125.9 148 57.4
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.1e-26 124.0 92 67.4
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 1.5e-26 123.6 148 44.6
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 4.1e-21 105.5 101 53.5
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 7.0e-21 104.8 101 52.5
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.9e-19 99.4 125 45.6
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 8.3e-14 81.3 95 44.2
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 1.3e-11 73.9 46 73.9
Aqoxy5G03468 Aquilegia oxysepala HOM05D002893 ORTHO05D003387 1.2e-07 60.8 68 45.6
CDE09G0940 Ceratophyllum demersum HOM05D002893 ORTHO05D003387 4.9e-06 55.5 70 40.0
TAR633G2105 Trochodendron aralioides HOM05D007663 ORTHO05D009455 6.4e-06 55.1 72 37.5
MCO14G492 Micromonas commoda HOM05D000227 ORTHO05D000152 8.3e-06 54.7 75 40.0


User provided reference genes

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