Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.1e-279 966.1 517 100.0
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 1.6e-254 882.5 520 92.7
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.6e-254 882.5 520 92.7
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.6e-254 882.5 520 92.7
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.1e-254 882.1 520 92.7
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.1e-254 882.1 520 92.5
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 6.1e-230 800.8 542 84.3
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 2.2e-171 606.3 568 65.5
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 6.7e-160 568.2 554 63.5
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 3.2e-154 549.3 562 61.2
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 1.0e-128 464.5 560 54.3
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 1.4e-128 464.2 538 56.1
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 1.7e-126 457.2 550 53.1
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 4.1e-125 452.6 550 52.7
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 1.4e-122 444.1 568 50.5
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 4.2e-122 442.6 554 52.5
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 2.1e-121 440.3 552 51.4
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 1.0e-120 438.0 561 52.0
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 2.3e-120 436.8 561 51.2
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 1.5e-119 434.1 536 52.4
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 2.0e-119 433.7 572 49.7
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 1.3e-118 431.0 542 50.6
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 1.7e-118 430.6 564 49.8
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 2.2e-118 430.3 534 52.6
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 3.7e-118 429.5 552 51.6
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 1.1e-117 427.9 542 50.6
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 1.8e-117 427.2 567 51.0
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 3.1e-117 426.4 539 50.5
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 1.2e-116 424.5 570 51.4
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 2.0e-116 423.7 590 48.8
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 7.7e-116 421.8 530 51.5
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 1.0e-115 421.4 531 51.4
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 1.9e-114 417.2 552 50.4
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 2.5e-114 416.8 577 48.5
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 7.2e-114 415.2 535 49.9
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 9.4e-114 414.8 578 48.1
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 1.6e-113 414.1 579 48.7
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 3.6e-113 412.9 407 61.4
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.8e-112 410.6 564 47.9
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 5.2e-112 409.1 532 50.9
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 5.2e-112 409.1 532 50.9
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 1.5e-111 407.5 563 48.8
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 2.6e-111 406.8 559 50.1
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 3.3e-111 406.4 610 47.5
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 5.7e-111 405.6 529 49.5
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 2.2e-110 403.7 531 49.5
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 3.7e-110 402.9 530 50.6
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 3.7e-110 402.9 552 49.1
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 4.8e-110 402.5 540 49.4
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 2.4e-109 400.2 635 46.3
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 2.4e-109 400.2 544 48.2
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 1.6e-108 397.5 396 56.1
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.6e-108 397.5 595 46.9
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 2.7e-108 396.7 555 48.5
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 4.5e-108 396.0 392 57.9
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 7.7e-108 395.2 555 48.8
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.3e-107 394.4 555 48.8
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 1.3e-107 394.4 574 46.2
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 1.7e-107 394.0 600 47.2
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 3.8e-107 392.9 389 59.9
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 1.5e-106 391.0 541 47.1
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 4.2e-106 389.4 456 55.3
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 2.1e-105 387.1 560 47.7
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 3.6e-105 386.3 582 47.6
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 3.0e-104 383.3 577 47.7
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 6.8e-104 382.1 552 46.4
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 2.0e-103 380.6 574 47.4
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 9.8e-103 378.3 573 45.5
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 1.7e-102 377.5 544 48.2
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 2.2e-102 377.1 535 48.0
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 4.8e-102 375.9 554 47.1
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 6.3e-102 375.6 405 56.0
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 4.1e-101 372.9 387 57.4
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 9.1e-101 371.7 403 55.6
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 1.6e-100 370.9 557 47.2
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 1.6e-100 370.9 548 48.5
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 2.0e-100 370.5 537 48.4
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 3.5e-100 369.8 544 47.6
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 4.5e-100 369.4 534 47.8
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 2.3e-99 367.1 464 50.6
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.1e-98 364.8 493 48.5
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 3.3e-98 363.2 509 48.5
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 3.6e-97 359.8 536 47.8
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 6.1e-97 359.0 544 46.3
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 1.0e-96 358.2 399 54.6
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 1.8e-96 357.5 540 48.3
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 5.2e-96 355.9 398 55.0
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 5.2e-96 355.9 397 54.7
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 5.2e-96 355.9 557 43.6
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 1.2e-95 354.8 398 54.8
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 1.2e-95 354.8 398 54.8
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 1.2e-95 354.8 533 45.2
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 5.7e-95 352.4 551 46.3
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 9.8e-95 351.7 520 47.1
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 2.8e-94 350.1 545 45.1
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 8.3e-94 348.6 544 46.0
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 4.5e-92 342.8 545 45.3
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 1.3e-91 341.3 437 49.2
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 2.9e-91 340.1 554 45.8
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 3.3e-90 336.7 535 44.7
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 8.0e-89 332.0 527 45.0
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 5.4e-85 319.3 419 48.9
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 7.8e-84 315.5 520 43.3
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 1.5e-82 311.2 497 44.1
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 2.1e-81 307.4 534 44.2
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.3e-80 303.9 575 40.7
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 2.9e-78 297.0 380 50.5
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 3.2e-77 293.5 387 47.8
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 5.4e-77 292.7 535 40.2
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 9.2e-77 292.0 386 47.2
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 9.2e-77 292.0 532 41.9
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 7.3e-50 202.6 375 40.5
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.4e-48 198.4 141 68.1
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 9.0e-48 195.7 340 41.5
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.1e-44 184.5 132 68.2
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 1.0e-43 182.2 448 35.7
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 2.1e-41 174.5 328 35.1
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 1.8e-40 171.4 268 42.9
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 1.7e-38 164.9 266 41.0
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 1.2e-36 158.7 193 46.6
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 3.0e-35 154.1 339 36.6
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.7e-33 147.1 108 67.6
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 1.0e-30 139.0 213 42.3
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 3.0e-27 127.5 117 59.8
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 7.4e-26 122.9 204 39.7
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 1.3e-25 122.1 197 40.1
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 4.8e-25 120.2 103 55.3
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 4.8e-25 120.2 103 55.3
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 4.1e-24 117.1 326 31.3
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 6.9e-24 116.3 204 39.7
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 2.8e-17 94.4 123 48.8
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 5.9e-15 86.7 62 67.7
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 3.8e-14 84.0 175 42.3
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 8.8e-11 72.8 191 39.8
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 7.0e-08 63.2 206 27.2
Carub.0001s2227 Capsella rubella HOM05D000428 ORTHO05D000582 5.0e-06 57.0 217 23.5
Mapoly0121s0015 Marchantia polymorpha HOM05D006053 ORTHO05D008381 5.0e-06 57.0 305 24.9


User provided reference genes

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