Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.1e-144 515.0 316 100.0
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.7e-140 501.5 313 98.1
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.6e-132 476.5 316 86.4
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 5.5e-125 451.4 313 92.3
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 8.0e-116 421.0 311 84.9
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 4.6e-103 378.6 311 75.6
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 3.3e-93 345.9 312 72.4
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 3.6e-92 342.4 319 70.5
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 8.1e-92 341.3 312 68.9
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 5.8e-90 335.1 326 68.1
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 1.7e-89 333.6 315 61.6
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 6.4e-89 331.6 319 70.2
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 1.1e-88 330.9 311 69.8
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 5.4e-88 328.6 317 71.0
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 5.4e-88 328.6 305 68.5
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 9.3e-88 327.8 311 69.5
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.2e-87 327.4 314 67.2
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 5.1e-86 322.0 315 69.5
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.3e-84 317.4 316 64.2
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 1.6e-84 317.0 312 70.2
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 2.8e-84 316.2 309 64.7
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 1.1e-83 314.3 318 65.1
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 2.4e-83 313.2 312 62.5
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.1e-83 312.8 313 63.3
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 1.2e-82 310.8 316 64.9
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 7.6e-82 308.1 330 65.2
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 2.9e-81 306.2 311 60.1
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 3.8e-81 305.8 331 63.7
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 1.4e-80 303.9 310 67.4
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 1.4e-80 303.9 318 64.8
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 3.2e-80 302.8 313 68.7
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 2.1e-79 300.1 312 66.0
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 2.7e-79 299.7 310 66.1
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 4.6e-79 298.9 306 64.7
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 6.0e-79 298.5 310 63.9
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 1.3e-78 297.4 313 67.1
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.3e-78 297.4 319 59.9
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 3.0e-78 296.2 313 65.8
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 5.1e-78 295.4 314 61.5
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 1.1e-77 294.3 315 62.2
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 1.1e-77 294.3 309 62.5
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.5e-77 293.1 318 65.1
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 2.5e-77 293.1 310 65.8
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 5.6e-77 292.0 313 65.8
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 9.6e-77 291.2 308 62.7
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 2.1e-76 290.0 313 65.5
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.1e-76 290.0 306 61.8
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 2.1e-76 290.0 305 61.6
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 4.8e-76 288.9 305 61.6
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 6.2e-76 288.5 311 60.8
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 6.2e-76 288.5 311 60.8
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 8.1e-76 288.1 309 61.8
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 3.1e-75 286.2 316 61.1
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 2.6e-74 283.1 309 62.5
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.6e-74 283.1 312 62.8
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 5.8e-74 282.0 308 61.7
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 5.8e-74 282.0 315 58.4
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 5.8e-74 282.0 315 58.4
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 7.6e-74 281.6 313 61.7
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 9.9e-74 281.2 357 57.7
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 4.9e-73 278.9 302 65.2
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 8.4e-73 278.1 314 57.3
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.1e-72 277.7 309 65.4
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 1.4e-72 277.3 313 62.0
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 2.4e-72 276.6 307 60.9
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 4.2e-72 275.8 307 61.9
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 9.3e-72 274.6 313 55.6
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 9.3e-72 274.6 310 62.9
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 1.6e-71 273.9 329 64.4
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 2.7e-71 273.1 317 56.2
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 3.5e-71 272.7 325 57.2
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 6.0e-71 271.9 319 66.1
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 6.0e-71 271.9 331 58.3
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 1.0e-70 271.2 311 59.5
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 1.0e-70 271.2 321 63.2
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 1.0e-70 271.2 305 63.0
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 1.3e-70 270.8 321 55.8
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 2.3e-70 270.0 310 60.6
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 3.0e-70 269.6 314 58.6
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.9e-70 269.2 312 60.3
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 5.1e-70 268.9 316 56.6
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 8.7e-70 268.1 301 55.8
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 4.3e-69 265.8 315 53.3
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 4.3e-69 265.8 312 60.6
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 9.6e-69 264.6 319 63.6
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 6.2e-68 261.9 302 60.9
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-67 261.2 313 64.9
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-67 261.2 313 64.9
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 1.5e-66 257.3 312 60.9
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 3.4e-66 256.1 314 59.6
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 4.5e-66 255.8 312 59.9
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 7.6e-66 255.0 317 61.5
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 1.3e-65 254.2 326 57.4
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.3e-65 254.2 314 57.6
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.3e-65 254.2 315 57.8
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 1.7e-65 253.8 314 55.7
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 2.2e-65 253.4 314 63.7
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 3.8e-65 252.7 326 57.1
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 6.5e-65 251.9 312 56.7
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 1.1e-64 251.1 310 59.7
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 1.1e-64 251.1 304 59.5
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.1e-64 251.1 320 56.6
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 9.3e-64 248.1 318 60.4
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 1.6e-63 247.3 315 57.5
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 2.7e-63 246.5 318 59.7
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 2.7e-63 246.5 327 61.5
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 4.6e-63 245.7 311 61.4
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 4.6e-63 245.7 313 62.6
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 6.0e-63 245.4 313 59.7
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 1.1e-61 241.1 314 59.6
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.5e-61 240.0 309 63.8
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 4.3e-61 239.2 413 45.3
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 3.7e-60 236.1 314 61.5
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 8.2e-60 235.0 314 59.9
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 1.8e-59 233.8 318 55.7
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.8e-59 233.8 319 58.0
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 3.4e-58 229.6 317 57.7
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 4.5e-58 229.2 301 56.1
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.0e-57 228.0 311 58.5
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 1.7e-57 227.3 318 59.7
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.7e-57 227.3 307 57.7
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 5.0e-57 225.7 318 48.7
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 4.2e-56 222.6 306 58.8
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 7.1e-56 221.9 276 54.7
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 7.1e-56 221.9 318 52.5
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 2.7e-55 219.9 315 60.6
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 2.7e-55 219.9 240 63.3
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 3.5e-55 219.5 310 51.0
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 7.9e-55 218.4 323 53.3
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 1.0e-54 218.0 304 60.5
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 2.3e-54 216.9 331 43.5
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 3.0e-54 216.5 304 58.2
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 3.0e-54 216.5 318 54.1
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 3.0e-54 216.5 314 51.9
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 1.1e-53 214.5 312 51.3
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 5.7e-53 212.2 318 54.1
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 5.3e-51 205.7 305 49.2
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 5.9e-50 202.2 303 54.1
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 2.2e-49 200.3 307 52.4
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 4.6e-47 192.6 228 59.2
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.8e-46 190.7 233 58.4
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 3.9e-46 189.5 311 51.8
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 5.7e-45 185.7 125 70.4
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 8.2e-44 181.8 130 67.7
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 1.2e-42 177.9 252 56.7
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.8e-41 172.9 130 66.9
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 6.5e-41 172.2 305 44.3
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.3e-38 163.7 298 44.3
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 9.7e-37 158.3 226 58.4
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 4.8e-36 156.0 221 52.0
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 4.8e-36 156.0 264 51.5
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 6.3e-36 155.6 323 43.3
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 8.2e-36 155.2 131 61.1
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 9.1e-35 151.8 103 71.8
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 8.5e-33 145.2 325 44.9
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 8.8e-30 135.2 131 71.0
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 1.3e-28 131.3 319 47.0
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 1.7e-28 131.0 348 41.4
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 4.8e-28 129.4 100 62.0
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 1.6e-26 124.4 316 35.1
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 1.0e-25 121.7 80 82.5
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 4.2e-24 116.3 78 76.9
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.2e-23 114.8 84 73.8
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 1.2e-23 114.8 332 44.0
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 1.8e-22 110.9 86 66.3
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.3e-20 104.8 90 65.6
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 4.8e-20 102.8 112 58.9
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 8.3e-20 102.1 206 56.8
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 9.1e-19 98.6 68 73.5
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 9.1e-19 98.6 63 76.2
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 6.5e-17 92.4 76 67.1
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 1.6e-15 87.8 86 48.8
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 5.2e-14 82.8 213 36.6
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 2.0e-13 80.9 80 56.2
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.6e-13 80.5 44 90.9
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 1.3e-12 78.2 64 54.7
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.8e-12 77.0 103 52.4
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.9e-12 76.3 119 45.4
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 2.4e-11 73.9 304 42.8
SEGI_24544 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.3e-08 63.5 110 45.5
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 4.2e-08 63.2 79 51.9
Sabra06G0076200 Salix brachista HOM05D003822 ORTHO05D349384 4.7e-07 59.7 85 49.4
SEGI_25865 Sequoiadendron giganteum HOM05D000010 ORTHO05D004484 4.7e-07 59.7 71 49.3
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 2.3e-06 57.4 67 52.2


User provided reference genes

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