Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1206 Fragaria x ananassa HOM05D004207 ORTHO05D005188 1.6e-55 219.2 109 100.0
FvH4_5g30880 Fragaria vesca HOM05D004207 ORTHO05D005188 1.0e-49 199.9 105 95.2
FAN18G2175 Fragaria x ananassa HOM05D004207 ORTHO05D005188 2.2e-49 198.7 104 96.2
FAN15G2977 Fragaria x ananassa HOM05D004207 ORTHO05D005188 2.9e-49 198.4 105 93.3
FAN20G2214 Fragaria x ananassa HOM05D004207 ORTHO05D005188 2.9e-49 198.4 105 93.3
RcHm_v2.0_Chr1g0339511 Rosa chinensis HOM05D004207 ORTHO05D005188 3.8e-49 198.0 105 92.4
FvH4_2g10400 Fragaria vesca HOM05D004207 ORTHO05D005188 8.5e-49 196.8 105 92.4
FAN24G1611 Fragaria x ananassa HOM05D004207 ORTHO05D005188 1.9e-48 195.7 104 93.3
Prupe.2G101700 Prunus persica HOM05D004207 ORTHO05D005188 3.8e-41 171.4 106 80.2
Cpa.g.sc92.81 Carica papaya HOM05D004207 ORTHO05D005188 9.4e-40 166.8 106 77.4
TAR633G0823 Trochodendron aralioides HOM05D004207 ORTHO05D005188 2.1e-39 165.6 106 75.5
TAR072G0001 Trochodendron aralioides HOM05D004207 ORTHO05D005188 4.7e-39 164.5 106 75.5
Cfa019993 Carpinus fangiana HOM05D004207 ORTHO05D000579 6.1e-39 164.1 106 77.4
Prupe.1G554500 Prunus persica HOM05D004207 ORTHO05D005188 6.1e-39 164.1 106 77.4
Sabra06G0027300 Salix brachista HOM05D004207 ORTHO05D005188 6.1e-39 164.1 106 77.4
Potri.006G040400 Populus trichocarpa HOM05D004207 ORTHO05D005188 8.0e-39 163.7 106 77.4
Haze_20240 Corylus avellana HOM05D004207 ORTHO05D005188 1.4e-38 162.9 106 77.4
Gohir.D03G072800 Gossypium hirsutum HOM05D004207 ORTHO05D005188 1.8e-38 162.5 106 76.4
Gorai.003G087000 Gossypium raimondii HOM05D004207 ORTHO05D005188 1.8e-38 162.5 106 76.4
QL07p011416 Quercus lobata HOM05D004207 ORTHO05D005188 3.0e-38 161.8 106 74.5
Lj6A558G55 Lonicera japonica HOM05D004207 ORTHO05D005188 4.0e-38 161.4 106 73.6
Manes.08G060400 Manihot esculenta HOM05D004207 ORTHO05D005188 4.0e-38 161.4 106 74.5
Psat7g005160 Pisum sativum HOM05D004207 ORTHO05D005188 5.2e-38 161.0 106 74.5
Ciclev10011666m.g Citrus clementina HOM05D004207 ORTHO05D005188 6.7e-38 160.6 106 76.4
Nitab4.5_0000812g0050 Nicotiana tabacum HOM05D004207 ORTHO05D005188 6.7e-38 160.6 106 73.6
Atru.chr1.1398 Acer truncatum HOM05D004207 ORTHO05D005188 8.8e-38 160.2 106 76.4
CsaV3_4G029510 Cucumis sativus L. HOM05D004207 ORTHO05D005188 8.8e-38 160.2 106 72.6
Nitab4.5_0004588g0010 Nicotiana tabacum HOM05D004207 ORTHO05D005188 8.8e-38 160.2 106 72.6
Sopen10g029060 Solanum pennellii HOM05D004207 ORTHO05D005188 8.8e-38 160.2 106 73.6
COL.COLO4_07075 Corchorus olitorius HOM05D004207 ORTHO05D005188 1.2e-37 159.8 106 74.5
Gohir.A02G105901 Gossypium hirsutum HOM05D004207 ORTHO05D005188 1.2e-37 159.8 106 74.5
Lj2C402T2 Lonicera japonica HOM05D004207 ORTHO05D005188 1.2e-37 159.8 106 73.6
Aqoxy1G00399 Aquilegia oxysepala HOM05D004207 ORTHO05D005188 1.5e-37 159.5 106 73.6
ClCG04G005620 Citrullus lanatus HOM05D004207 ORTHO05D005188 1.5e-37 159.5 106 72.6
GSVIVG01025744001 Vitis vinifera HOM05D004207 ORTHO05D005188 1.5e-37 159.5 106 74.5
ATR0307G046 Amborella trichopoda HOM05D004207 ORTHO05D005188 2.0e-37 159.1 106 75.5
MBI13_g09213_MAGBIO Magnolia biondii HOM05D004207 ORTHO05D005188 2.0e-37 159.1 106 74.5
MELO3C019096.2 Cucumis melo HOM05D004207 ORTHO05D005188 2.6e-37 158.7 106 72.6
Solyc10g078400.2 Solanum lycopersicum HOM05D004207 ORTHO05D005188 2.6e-37 158.7 106 73.6
MSTRG.19794 Avicennia marina HOM05D004207 ORTHO05D005188 3.3e-37 158.3 106 70.8
Medtr8g106395 Medicago truncatula HOM05D004207 ORTHO05D005188 3.3e-37 158.3 106 73.6
Sabra16G0037900 Salix brachista HOM05D004207 ORTHO05D005188 5.7e-37 157.5 106 72.6
PGSC0003DMG400008376 Solanum tuberosum HOM05D004207 ORTHO05D005188 5.7e-37 157.5 106 71.7
Duzib093G1083 Durio zibethinus HOM05D004207 ORTHO05D005188 7.5e-37 157.1 106 73.6
Potri.016G035600 Populus trichocarpa HOM05D004207 ORTHO05D005188 7.5e-37 157.1 106 71.7
Thecc.05G127200 Theobroma cacao HOM05D004207 ORTHO05D005188 7.5e-37 157.1 106 72.6
CANSAT64G1578 Cannabis sativa HOM05D004207 ORTHO05D005188 9.7e-37 156.8 106 72.6
CiPaw.10G041000 Carya illinoinensis HOM05D004207 ORTHO05D005188 9.7e-37 156.8 106 72.6
Migut.J01642 Erythranthe guttata HOM05D004207 ORTHO05D005188 9.7e-37 156.8 106 71.7
SalBow6G6231 Salvia bowleyana HOM05D004207 ORTHO05D005188 9.7e-37 156.8 106 71.7
Dinv29109 Davidia involucrata HOM05D004207 ORTHO05D005188 1.3e-36 156.4 110 69.1
Peaxi162Scf00003g04926 Petunia axillaris HOM05D004207 ORTHO05D005188 1.3e-36 156.4 106 70.8
Sed0024335 Sechium edule HOM05D004207 ORTHO05D005188 1.3e-36 156.4 106 69.8
Glyma.02G162900 Glycine max HOM05D004207 ORTHO05D005188 1.7e-36 156.0 106 73.6
PGR142G0266 Punica granatum HOM05D004207 ORTHO05D005188 1.7e-36 156.0 106 71.7
SGA_v2.0_scaffold66G22265 Striga asiatica HOM05D004207 ORTHO05D002907 1.7e-36 156.0 106 69.8
CAN.G960.63 Capsicum annuum HOM05D004207 ORTHO05D005188 2.2e-36 155.6 106 69.8
Ca_25841_v3 Cicer arietinum L. HOM05D004207 ORTHO05D005188 2.2e-36 155.6 105 72.4
CiPaw.09G048900 Carya illinoinensis HOM05D004207 ORTHO05D005188 2.8e-36 155.2 106 71.7
arahy.Tifrunner.gnm1.ann1.I2Z9WV Arachis hypogaea HOM05D004207 ORTHO05D005188 4.8e-36 154.5 106 71.7
MD12G1095500 Malus domestica HOM05D004207 ORTHO05D005188 4.8e-36 154.5 106 73.6
Nn7g36827 Nelumbo nucifera HOM05D004207 ORTHO05D005188 4.8e-36 154.5 106 69.8
PSO339G0215 Papaver somniferum HOM05D004207 ORTHO05D005188 4.8e-36 154.5 106 71.7
PSO384G4208 Papaver somniferum HOM05D004207 ORTHO05D005188 4.8e-36 154.5 106 71.7
TWI77G0534 Tripterygium wilfordii HOM05D004207 ORTHO05D005188 6.3e-36 154.1 106 70.8
Dinv21465 Davidia involucrata HOM05D004207 ORTHO05D005188 8.2e-36 153.7 106 72.6
arahy.Tifrunner.gnm1.ann1.1DJ9GZ Arachis hypogaea HOM05D004207 ORTHO05D005188 1.1e-35 153.3 105 72.4
EL10Ac3g07257 Beta vulgaris HOM05D004207 ORTHO05D005188 1.1e-35 153.3 109 67.9
Hma1.2p1_0007F.1_g005270 Hydrangea macrophylla HOM05D004207 ORTHO05D005188 1.4e-35 152.9 106 69.8
CARHR159490 Cardamine hirsuta HOM05D004207 ORTHO05D005188 1.8e-35 152.5 105 68.6
Glyma.09G026700 Glycine max HOM05D004207 ORTHO05D005188 1.8e-35 152.5 106 72.6
VMungo0720G0799 Vigna mungo HOM05D004207 ORTHO05D005188 1.8e-35 152.5 106 71.7
Ah.13g077190 Amaranthus hybridus HOM05D002757 ORTHO05D003252 3.1e-35 151.8 109 67.0
arahy.Tifrunner.gnm1.ann1.6G7KL6 Arachis hypogaea HOM05D004207 ORTHO05D005188 3.1e-35 151.8 106 70.8
arahy.Tifrunner.gnm1.ann1.U0ATL0 Arachis hypogaea HOM05D004207 ORTHO05D005188 3.1e-35 151.8 106 70.8
DCAR_020580 Daucus carota HOM05D004207 ORTHO05D005188 4.1e-35 151.4 106 67.9
AL5G38110 Arabidopsis lyrata HOM05D004207 ORTHO05D005188 5.3e-35 151.0 105 68.6
Carub.0005s2349 Capsella rubella HOM05D004207 ORTHO05D005188 7.0e-35 150.6 105 68.6
AT3G56750 Arabidopsis thaliana HOM05D004207 ORTHO05D005188 1.2e-34 149.8 105 67.6
unitig_744.g24179 Utricularia gibba HOM05D004207 ORTHO05D005188 1.2e-34 149.8 106 66.0
Hund24581 Selenicereus undatus HOM05D004207 ORTHO05D005188 2.0e-34 149.1 109 66.1
CSS0026158 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 2.7e-34 148.7 106 65.1
CSS0030520 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 2.7e-34 148.7 106 65.1
Ah.04g150870 Amaranthus hybridus HOM05D000591 ORTHO05D000579 3.5e-34 148.3 109 65.1
CSS0037639 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 3.5e-34 148.3 106 67.9
Oeu057783.1 Olea europaea HOM05D004207 ORTHO05D005188 3.5e-34 148.3 108 68.5
Eucgr.K01646 Eucalyptus grandis HOM05D004207 ORTHO05D005188 4.5e-34 147.9 106 69.8
HanXRQChr14g0437711 Helianthus annuus HOM05D004207 ORTHO05D005188 4.5e-34 147.9 106 67.9
AUR62018367 Chenopodium quinoa HOM05D004207 ORTHO05D005188 5.9e-34 147.5 109 66.1
Phvul.007G243300 Phaseolus vulgaris HOM05D004207 ORTHO05D005188 5.9e-34 147.5 106 69.8
Rhsim03G0036600 Rhododendron simsii HOM05D004207 ORTHO05D005188 5.9e-34 147.5 106 66.0
SGA_v2.0_scaffold69G23162 Striga asiatica HOM05D004207 ORTHO05D005188 5.9e-34 147.5 110 66.4
BcaC08g44805 Brassica carinata HOM05D004207 ORTHO05D005188 7.7e-34 147.1 105 66.7
BolC6t37545H Brassica oleracea HOM05D004207 ORTHO05D005188 7.7e-34 147.1 105 66.7
Cc06_g19790 Coffea canephora HOM05D004207 ORTHO05D005188 7.7e-34 147.1 106 68.9
Oeu021494.1 Olea europaea HOM05D004207 ORTHO05D005188 1.0e-33 146.7 115 65.2
AUR62030295 Chenopodium quinoa HOM05D004207 ORTHO05D005188 1.3e-33 146.4 109 65.1
Lsat_1_v5_gn_2_54201 Lactuca sativa HOM05D004207 ORTHO05D005188 2.2e-33 145.6 106 66.0
Sp5g05820 Schrenkiella parvula HOM05D004207 ORTHO05D005188 2.2e-33 145.6 105 66.7
Actinidia17959 Actinidia chinensis HOM05D004207 ORTHO05D005188 2.9e-33 145.2 106 65.1
BcaB02g07638 Brassica carinata HOM05D004207 ORTHO05D005188 2.9e-33 145.2 105 66.7
CSS0037507 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 2.9e-33 145.2 106 67.0
Lalb_Chr14g0365741 Lupinus albus HOM05D004207 ORTHO05D005188 2.9e-33 145.2 105 67.6
Actinidia37879 Actinidia chinensis HOM05D004207 ORTHO05D005188 3.8e-33 144.8 106 65.1
BcaC07g40120 Brassica carinata HOM05D004207 ORTHO05D005188 5.0e-33 144.4 105 65.7
Thhalv10016761m.g Eutrema salsugineum HOM05D004207 ORTHO05D005188 1.1e-32 143.3 106 66.0
Sc13g0001060 Simmondsia chinensis HOM05D004207 ORTHO05D005188 1.1e-32 143.3 106 67.0
BcaC07g39983 Brassica carinata HOM05D004207 ORTHO05D005188 1.9e-32 142.5 105 65.7
C06p23760 Brassica napus HOM05D004207 ORTHO05D005188 1.9e-32 142.5 105 64.8
CDE02G0307 Ceratophyllum demersum HOM05D004207 ORTHO05D005188 1.9e-32 142.5 106 64.2
A07p23050 Brassica napus HOM05D004207 ORTHO05D005188 2.5e-32 142.1 105 64.8
C08p31970 Brassica napus HOM05D004207 ORTHO05D005188 2.5e-32 142.1 105 65.7
BraA07t29968Z Brassica rapa HOM05D004207 ORTHO05D005188 2.5e-32 142.1 105 64.8
THA.LOC104824395 Tarenaya hassleriana HOM05D004207 ORTHO05D005188 2.5e-32 142.1 106 64.2
Aa31LG10G11590 Aethionema arabicum HOM05D004207 ORTHO05D005188 5.5e-32 141.0 106 64.2
Thhalv10006019m.g Eutrema salsugineum HOM05D004207 ORTHO05D005188 9.4e-32 140.2 105 64.8
TPR.G5525 Trifolium pratense HOM05D004207 ORTHO05D005188 1.6e-31 139.4 132 56.1
SHI31312 Sapria himalayana HOM05D004207 ORTHO05D005188 2.1e-31 139.0 106 65.1
vmacro07779 Vaccinium macrocarpon HOM05D004207 ORTHO05D005188 2.1e-31 139.0 114 61.4
CARHR136240 Cardamine hirsuta HOM05D004207 ORTHO05D005188 1.0e-30 136.7 107 62.6
ECA238G2339 Erigeron canadensis HOM05D004207 ORTHO05D000645 1.0e-30 136.7 106 64.2
Carub.0004s2346 Capsella rubella HOM05D004207 ORTHO05D005188 1.8e-30 136.0 106 62.3
AL4G39120 Arabidopsis lyrata HOM05D004207 ORTHO05D005188 3.0e-30 135.2 106 63.2
THA.LOC104803259 Tarenaya hassleriana HOM05D004207 ORTHO05D005188 5.2e-30 134.4 106 62.3
A05p02060 Brassica napus HOM05D004207 ORTHO05D005188 6.8e-30 134.0 106 61.3
BraA05t19202Z Brassica rapa HOM05D004207 ORTHO05D005188 8.8e-30 133.7 106 61.3
BcaC02g12755 Brassica carinata HOM05D004207 ORTHO05D005188 1.2e-29 133.3 106 61.3
C04p02450 Brassica napus HOM05D004207 ORTHO05D005188 2.0e-29 132.5 106 60.4
BolC4t21890H Brassica oleracea HOM05D004207 ORTHO05D005188 2.0e-29 132.5 106 60.4
Lj5g0028239 Lotus japonicus HOM05D004207 ORTHO05D005188 5.7e-29 131.0 106 61.3
SEGI_12806 Sequoiadendron giganteum HOM05D004207 ORTHO05D005188 7.5e-29 130.6 106 59.4
AT2G41150 Arabidopsis thaliana HOM05D004207 ORTHO05D005188 2.2e-28 129.0 106 60.4
BcaC01g05358 Brassica carinata HOM05D004207 ORTHO05D005188 2.2e-28 129.0 102 61.8
Zm00001eb017860 Zea mays HOM05D004207 ORTHO05D005188 4.8e-28 127.9 106 60.4
BcaB06g27278 Brassica carinata HOM05D004207 ORTHO05D005188 4.1e-27 124.8 95 63.2
Os07g0641000 Oryza sativa ssp. japonica HOM05D004207 ORTHO05D005188 9.1e-27 123.6 107 56.1
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 1.2e-26 123.2 95 62.1
Os03g0366700 Oryza sativa ssp. japonica HOM05D004207 ORTHO05D005188 2.7e-26 122.1 106 56.6
Lj2A402G44 Lonicera japonica HOM05D004207 ORTHO05D005188 1.4e-22 109.8 71 76.1
QL06p027270 Quercus lobata HOM05D004207 ORTHO05D005188 2.3e-22 109.0 107 56.1
Lj6C571T2 Lonicera japonica HOM05D004207 ORTHO05D005188 8.9e-22 107.1 70 77.1
CDE08G0867 Ceratophyllum demersum HOM05D004207 ORTHO05D005188 3.7e-20 101.7 79 62.0
AagrBONN_evm.TU.Sc2ySwM_362.2903 Anthoceros agrestis HOM05D004207 ORTHO05D005188 2.4e-19 99.0 106 47.2
CSS0011177 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 3.1e-19 98.6 71 63.4
CSS0017049 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 3.1e-19 98.6 71 63.4
CSS0022112 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 3.1e-19 98.6 71 63.4
CSS0037189 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 3.1e-19 98.6 71 63.4
BraA09t40412Z Brassica rapa HOM05D004207 ORTHO05D005188 1.2e-18 96.7 70 68.6
BolC8t50815H Brassica oleracea HOM05D004207 ORTHO05D005188 2.0e-18 95.9 70 67.1
CSS0007811 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 2.7e-18 95.5 71 60.6
SMO119G0213 Selaginella moellendorffii HOM05D004207 ORTHO05D005188 1.2e-15 86.7 107 41.1
Zm00001eb109900 Zea mays HOM05D004207 ORTHO05D005188 8.0e-15 84.0 71 62.0
Pp3c2_30150 Physcomitrium patens HOM05D004207 ORTHO05D005188 1.0e-14 83.6 106 42.5
Cc00_g13290 Coffea canephora HOM05D004207 ORTHO05D005188 3.2e-11 72.0 54 63.0
Cc00_g24130 Coffea canephora HOM05D004207 ORTHO05D005188 9.2e-11 70.5 54 61.1
Nn2g14966 Nelumbo nucifera HOM05D004207 ORTHO05D005188 1.3e-09 66.6 43 72.1
FAN27G3487 Fragaria x ananassa HOM05D004207 ORTHO05D005188 3.9e-09 65.1 37 83.8


User provided reference genes

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