Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 6.6e-208 727.2 400 100.0
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 6.5e-179 630.9 365 97.8
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.6e-174 616.3 368 95.4
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 3.6e-169 598.6 365 93.2
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 6.1e-169 597.8 368 93.8
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 4.1e-157 558.5 364 85.4
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 5.2e-152 541.6 364 84.9
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 2.2e-150 536.2 364 83.5
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 4.2e-146 521.9 364 81.9
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 4.2e-146 521.9 364 73.1
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 9.4e-146 520.8 364 75.8
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 1.2e-145 520.4 364 72.8
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 4.0e-144 515.4 364 74.2
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 6.8e-144 514.6 364 72.5
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 1.3e-142 510.4 364 78.8
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 5.4e-141 505.0 366 79.5
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 5.4e-141 505.0 364 78.8
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 2.9e-139 499.2 361 78.9
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.5e-139 498.0 364 75.8
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 6.5e-139 498.0 364 69.2
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 2.5e-138 496.1 364 76.1
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 5.5e-138 495.0 364 69.5
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 8.0e-137 491.1 365 69.9
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 8.0e-137 491.1 365 77.0
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 1.4e-136 490.3 365 76.7
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 2.3e-136 489.6 365 76.7
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 2.3e-136 489.6 365 77.0
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 4.0e-136 488.8 358 69.8
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 2.0e-135 486.5 365 75.3
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 2.6e-135 486.1 364 73.4
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 9.8e-135 484.2 364 68.4
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 1.7e-134 483.4 358 69.3
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 2.2e-134 483.0 365 67.9
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 3.7e-134 482.3 365 74.2
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 3.1e-133 479.2 361 68.1
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 7.0e-133 478.0 349 69.1
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 9.2e-133 477.6 358 68.2
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.2e-132 477.2 364 73.6
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 1.2e-132 477.2 364 71.2
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.2e-132 477.2 358 68.4
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 1.6e-132 476.9 364 74.2
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 1.6e-132 476.9 364 76.1
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 3.5e-132 475.7 364 69.2
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 1.0e-131 474.2 360 67.8
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 1.3e-131 473.8 364 69.5
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 3.8e-131 472.2 365 72.1
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 5.0e-131 471.9 365 73.2
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 1.1e-130 470.7 364 67.9
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 1.9e-130 469.9 360 74.2
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 1.9e-130 469.9 365 64.9
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 2.5e-130 469.5 365 73.2
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 4.3e-130 468.8 361 66.5
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 7.3e-130 468.0 364 75.0
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 9.5e-130 467.6 364 71.2
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 3.6e-129 465.7 364 71.2
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 8.0e-129 464.5 367 72.5
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 1.0e-128 464.2 364 67.6
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 3.0e-128 462.6 361 68.4
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 3.0e-128 462.6 361 68.4
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 5.2e-128 461.8 364 69.8
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 5.2e-128 461.8 364 70.1
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 2.0e-127 459.9 365 72.6
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 3.4e-127 459.1 364 64.6
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 4.4e-127 458.8 389 64.8
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 1.3e-126 457.2 318 73.9
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 1.7e-126 456.8 338 76.6
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 1.7e-126 456.8 365 71.5
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 6.4e-126 454.9 364 64.0
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 7.0e-125 451.4 364 63.5
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 4.6e-124 448.7 336 76.2
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 7.8e-124 448.0 318 72.3
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 1.0e-123 447.6 352 67.3
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 3.9e-123 445.7 355 71.3
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 8.6e-123 444.5 361 70.4
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 1.5e-122 443.7 364 70.1
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 1.6e-121 440.3 344 65.7
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 8.0e-121 438.0 364 63.2
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 4.0e-120 435.6 364 62.6
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 4.4e-119 432.2 338 73.4
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 2.0e-116 423.3 364 66.8
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 4.6e-116 422.2 364 63.2
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 3.4e-111 406.0 365 64.9
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 9.8e-111 404.4 365 64.7
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 4.9e-110 402.1 377 63.9
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 1.4e-109 400.6 359 64.9
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 2.1e-108 396.7 377 54.6
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 4.6e-108 395.6 342 58.5
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 8.6e-107 391.3 357 68.1
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 1.1e-106 391.0 317 63.1
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 2.3e-104 383.3 363 54.3
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 3.1e-104 382.9 364 61.8
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 3.1e-104 382.9 203 96.1
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 2.0e-103 380.2 364 61.8
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 4.9e-102 375.6 363 53.7
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.2e-100 370.9 252 72.6
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 8.1e-97 358.2 372 57.3
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.8e-88 330.5 263 65.8
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 5.8e-87 325.5 360 54.4
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 2.2e-86 323.6 363 54.8
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.1e-81 307.0 215 72.1
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 2.6e-79 300.1 203 73.4
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 6.0e-76 288.9 287 53.7
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.9e-75 286.2 201 70.1
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 3.3e-74 283.1 203 69.0
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.0e-71 273.9 207 67.6
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.4e-71 273.1 194 69.1
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.0e-67 260.0 200 66.0
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 9.0e-64 248.4 194 80.4
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 7.9e-60 235.3 352 41.5
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 8.5e-54 215.3 364 40.9
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.0e-50 204.1 142 71.8
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 3.7e-49 199.9 160 80.6
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 8.2e-49 198.7 160 80.0
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.5e-46 188.7 124 71.8
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 2.5e-45 187.2 161 73.9
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 7.2e-45 185.7 161 61.5
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 4.8e-41 172.9 108 76.9
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.2e-31 141.7 105 65.7
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.5e-30 136.0 93 73.1
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.2e-28 131.7 97 66.0
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-25 121.7 80 73.8
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 1.1e-24 118.6 78 79.5
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 1.4e-24 118.2 89 69.7
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 2.3e-19 100.9 108 53.7
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 6.8e-19 99.4 73 60.3
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 1.2e-18 98.6 58 79.3
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 1.7e-17 94.7 71 60.6
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 1.2e-12 78.6 89 49.4
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 2.1e-12 77.8 54 70.4
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 1.8e-11 74.7 86 47.7
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 4.0e-11 73.6 46 71.7
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 1.5e-10 71.6 46 69.6
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 1.5e-10 71.6 46 69.6
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 1.1e-08 65.5 43 69.8


User provided reference genes

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