Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1040 Fragaria x ananassa HOM05D007175 ORTHO05D009032 5.6e-272 940.3 447 100.0
FAN08G3457 Fragaria x ananassa HOM05D007175 ORTHO05D009032 2.8e-263 911.4 447 96.9
FAN13G2687 Fragaria x ananassa HOM05D007175 ORTHO05D009032 8.4e-252 873.2 440 94.1
FAN18G0319 Fragaria x ananassa HOM05D007175 ORTHO05D009032 9.0e-230 800.0 440 87.5
RcHm_v2.0_Chr7g0217631 Rosa chinensis HOM05D007175 ORTHO05D009032 5.5e-227 790.8 440 85.5
FvH4_5g26760 Fragaria vesca HOM05D007175 ORTHO05D009032 5.3e-214 747.7 440 83.2
Prupe.5G000900 Prunus persica HOM05D007175 ORTHO05D009032 1.6e-202 709.5 435 78.2
GSVIVG01013462001 Vitis vinifera HOM05D007175 ORTHO05D009032 1.1e-187 660.2 438 71.5
Cpa.g.sc36.96 Carica papaya HOM05D007175 ORTHO05D009032 1.2e-186 656.8 431 71.5
Dinv30325 Davidia involucrata HOM05D007175 ORTHO05D009032 1.2e-186 656.8 434 73.0
Cfa014168 Carpinus fangiana HOM05D007175 ORTHO05D009032 1.2e-184 650.2 422 71.6
Atru.chr13.18 Acer truncatum HOM05D007175 ORTHO05D009032 2.8e-183 645.6 406 72.9
Haze_22891 Corylus avellana HOM05D007175 ORTHO05D009032 6.3e-183 644.4 422 71.1
Eucgr.F03631 Eucalyptus grandis HOM05D007175 ORTHO05D009032 4.5e-181 638.3 427 69.3
Actinidia37900 Actinidia chinensis HOM05D007175 ORTHO05D009032 1.0e-180 637.1 443 67.9
Thecc.08G097400 Theobroma cacao HOM05D007175 ORTHO05D009032 1.3e-180 636.7 429 69.5
DCAR_013353 Daucus carota HOM05D007175 ORTHO05D009032 2.9e-180 635.6 435 67.8
COL.COLO4_12263 Corchorus olitorius HOM05D007175 ORTHO05D009032 5.0e-180 634.8 427 68.9
QL02p016318 Quercus lobata HOM05D007175 ORTHO05D009032 8.5e-180 634.0 441 68.3
Duzib116G0712 Durio zibethinus HOM05D007175 ORTHO05D009032 2.5e-179 632.5 420 70.7
Glyma.14G047400 Glycine max HOM05D007175 ORTHO05D009032 5.5e-179 631.3 430 69.5
Oeu000737.1 Olea europaea HOM05D007175 ORTHO05D009032 7.2e-179 630.9 406 72.9
Gorai.002G111700 Gossypium raimondii HOM05D007175 ORTHO05D009032 4.7e-178 628.2 427 68.9
Sabra05G0201000 Salix brachista HOM05D007175 ORTHO05D009032 8.0e-178 627.5 444 65.8
Glyma.02G269500 Glycine max HOM05D007175 ORTHO05D009032 1.0e-177 627.1 431 68.4
Gohir.D01G086300 Gossypium hirsutum HOM05D007175 ORTHO05D009032 1.4e-177 626.7 427 68.9
CiPaw.07G130000 Carya illinoinensis HOM05D007175 ORTHO05D009032 6.8e-177 624.4 409 71.1
LjContig00564g0015126 Lotus japonicus HOM05D007175 ORTHO05D009032 1.5e-176 623.2 418 68.9
Nn5g31081 Nelumbo nucifera HOM05D007175 ORTHO05D009032 1.5e-176 623.2 413 70.7
Lalb_Chr17g0347321 Lupinus albus HOM05D007175 ORTHO05D009032 2.0e-176 622.9 427 68.6
VMungo0647G1837 Vigna mungo HOM05D007175 ORTHO05D009032 2.0e-176 622.9 436 67.9
Cc10_g00080 Coffea canephora HOM05D007175 ORTHO05D009032 5.7e-176 621.3 413 70.2
THA.LOC104806865 Tarenaya hassleriana HOM05D007175 ORTHO05D009032 2.4e-174 615.9 400 71.2
ClCG11G019270 Citrullus lanatus HOM05D007175 ORTHO05D009032 3.1e-174 615.5 441 66.4
Lalb_Chr10g0105651 Lupinus albus HOM05D007175 ORTHO05D009032 3.1e-174 615.5 399 70.9
CsaV3_4G037860 Cucumis sativus L. HOM05D007175 ORTHO05D009032 1.6e-173 613.2 444 65.8
Psat2g024960 Pisum sativum HOM05D007175 ORTHO05D009032 4.5e-173 611.7 428 65.4
Aqoxy5G03363 Aquilegia oxysepala HOM05D007175 ORTHO05D009032 1.0e-172 610.5 399 71.2
Rhsim07G0258300 Rhododendron simsii HOM05D007175 ORTHO05D009032 2.3e-172 609.4 396 70.7
Medtr5g085780 Medicago truncatula HOM05D007175 ORTHO05D009032 2.9e-172 609.0 423 66.2
PSO782G3151 Papaver somniferum HOM05D007175 ORTHO05D009032 1.1e-171 607.1 410 68.5
TPR.G14442 Trifolium pratense HOM05D007175 ORTHO05D009032 1.1e-171 607.1 416 66.6
Sed0015844 Sechium edule HOM05D007175 ORTHO05D009032 1.9e-171 606.3 430 67.4
PSO063G3513 Papaver somniferum HOM05D007175 ORTHO05D009032 9.5e-171 604.0 400 69.8
Ca_06102_v3 Cicer arietinum L. HOM05D007175 ORTHO05D009032 2.8e-170 602.4 420 65.7
MELO3C017080.2 Cucumis melo HOM05D007175 ORTHO05D009032 3.6e-170 602.1 473 62.2
CARHR285020 Cardamine hirsuta HOM05D007175 ORTHO05D009032 1.0e-169 600.5 427 65.6
HanXRQChr14g0427501 Helianthus annuus HOM05D007175 ORTHO05D009032 2.3e-169 599.4 407 69.3
BcaB07g31081 Brassica carinata HOM05D007175 ORTHO05D009032 4.0e-169 598.6 397 69.8
AL8G19150 Arabidopsis lyrata HOM05D007175 ORTHO05D009032 6.8e-169 597.8 423 65.7
A09p19640 Brassica napus HOM05D007175 ORTHO05D009032 6.8e-169 597.8 403 68.5
BolC9t55392H Brassica oleracea HOM05D007175 ORTHO05D009032 8.9e-169 597.4 426 66.9
C09p25000 Brassica napus HOM05D007175 ORTHO05D009032 1.2e-168 597.0 393 70.5
THA.LOC104801648 Tarenaya hassleriana HOM05D007175 ORTHO05D009032 1.2e-168 597.0 406 67.2
Thhalv10003204m.g Eutrema salsugineum HOM05D007175 ORTHO05D009032 1.5e-168 596.7 426 64.8
BcaC04g21999 Brassica carinata HOM05D007175 ORTHO05D009032 2.0e-168 596.3 424 66.7
CAN.G1330.33 Capsicum annuum HOM05D007175 ORTHO05D009032 7.5e-168 594.3 407 69.0
arahy.Tifrunner.gnm1.ann1.YTK8KP Arachis hypogaea HOM05D007175 ORTHO05D009032 9.8e-168 594.0 425 66.6
Lsat_1_v5_gn_2_2721 Lactuca sativa HOM05D007175 ORTHO05D009032 8.3e-167 590.9 419 66.1
Aa31LG9G12520 Aethionema arabicum HOM05D007175 ORTHO05D009032 1.1e-166 590.5 423 65.0
arahy.Tifrunner.gnm1.ann1.BW2M8B Arachis hypogaea HOM05D000005 ORTHO05D009032 4.1e-166 588.6 425 65.9
TWI36G1138 Tripterygium wilfordii HOM05D007175 ORTHO05D009032 5.9e-165 584.7 424 66.5
ATR0605G370 Amborella trichopoda HOM05D007175 ORTHO05D009032 5.0e-164 581.6 426 64.3
ECA238G4354 Erigeron canadensis HOM05D007175 ORTHO05D009032 1.1e-163 580.5 397 68.3
Potri.005G259700 Populus trichocarpa HOM05D007175 ORTHO05D009032 3.3e-163 578.9 441 64.4
CSS0024225 Camellia sinensis var. sinensis HOM05D007175 ORTHO05D009032 8.9e-161 570.9 400 68.5
AUR62035193 Chenopodium quinoa HOM05D007175 ORTHO05D009032 7.5e-160 567.8 407 63.4
AUR62042532 Chenopodium quinoa HOM05D007175 ORTHO05D009032 1.2e-157 560.5 407 62.9
AT5G42370 Arabidopsis thaliana HOM05D007175 ORTHO05D009032 2.7e-157 559.3 435 62.5
Ah.14g086450 Amaranthus hybridus HOM05D007175 ORTHO05D009032 4.6e-157 558.5 403 62.3
BraA09t37575Z Brassica rapa HOM05D007175 ORTHO05D009032 8.6e-156 554.3 435 62.3
Os02g0592200 Oryza sativa ssp. japonica HOM05D007175 ORTHO05D009032 1.5e-155 553.5 396 63.4
Ciclev10003552m.g Citrus clementina HOM05D007175 ORTHO05D009032 9.5e-155 550.8 445 60.7
Gohir.A01G101333 Gossypium hirsutum HOM05D007175 ORTHO05D009032 2.2e-151 539.7 427 60.9
BcaNung05249 Brassica carinata HOM05D007175 ORTHO05D009032 1.9e-147 526.6 397 63.7
HPP92_018876 Vanilla planifolia HOM05D007175 ORTHO05D009032 6.2e-146 521.5 391 62.7
AagrBONN_evm.TU.Sc2ySwM_117.3655 Anthoceros agrestis HOM05D007175 ORTHO05D009032 1.2e-144 517.3 403 58.6
EL10Ac1g01857 Beta vulgaris HOM05D007175 ORTHO05D009032 1.2e-144 517.3 422 60.7
CANSAT25G0321 Cannabis sativa HOM05D007175 ORTHO05D009032 1.1e-142 510.8 438 59.4
CSS0000573 Camellia sinensis var. sinensis HOM05D007175 ORTHO05D009032 2.5e-139 499.6 391 63.4
TAR376G0324 Trochodendron aralioides HOM05D007175 ORTHO05D009032 4.7e-138 495.4 328 71.6
Mapoly0013s0050 Marchantia polymorpha HOM05D007175 ORTHO05D009032 1.5e-136 490.3 392 57.9
Phvul.008G212600 Phaseolus vulgaris HOM05D007175 ORTHO05D009032 9.9e-136 487.6 326 70.9
CSS0003113 Camellia sinensis var. sinensis HOM05D007175 ORTHO05D009032 1.7e-135 486.9 391 62.4
Pp3c5_8650 Physcomitrium patens HOM05D007175 ORTHO05D009032 3.8e-135 485.7 419 54.9
Lj4A814G51 Lonicera japonica HOM05D007175 ORTHO05D009032 1.1e-134 484.2 308 73.4
Manes.18G000500 Manihot esculenta HOM05D007175 ORTHO05D009032 5.4e-134 481.9 319 70.8
CSS0005819 Camellia sinensis var. sinensis HOM05D007175 ORTHO05D009032 1.0e-132 477.6 381 62.5
SMO259G0040 Selaginella moellendorffii HOM05D007175 ORTHO05D009032 3.3e-131 472.6 398 56.0
Zm00001eb245810 Zea mays HOM05D007175 ORTHO05D009032 5.6e-131 471.9 314 67.2
Carub.0008s0679 Capsella rubella HOM05D007175 ORTHO05D009032 2.5e-123 446.4 309 66.7
Sp7g08160 Schrenkiella parvula HOM05D007175 ORTHO05D009032 3.6e-122 442.6 309 67.0
CBR_g4433 Chara braunii HOM05D007175 ORTHO05D009032 6.9e-113 411.8 397 51.4
HPP92_018864 Vanilla planifolia HOM05D007175 ORTHO05D009032 1.3e-103 380.9 228 76.3
PSO063G1612 Papaver somniferum HOM05D007175 ORTHO05D009032 1.3e-90 337.8 202 75.7
Peaxi162Scf00385g01230 Petunia axillaris HOM05D007175 ORTHO05D009032 1.2e-80 304.7 236 64.4
Hma1.2p1_0810F.1_g221930 Hydrangea macrophylla HOM05D007175 ORTHO05D009032 1.3e-74 284.6 198 64.6
LjContig00564g0013673 Lotus japonicus HOM05D007175 ORTHO05D009032 3.2e-70 270.0 246 57.3
PRCOL_00006786 Prasinoderma coloniale HOM05D007175 ORTHO05D009032 2.0e-59 234.2 383 36.6
CSS0005025 Camellia sinensis var. sinensis HOM05D007175 ORTHO05D009032 1.7e-55 221.1 130 80.8
CSS0026468 Camellia sinensis var. sinensis HOM05D007175 ORTHO05D009032 1.7e-55 221.1 130 80.8
Peaxi162Scf00385g01229 Petunia axillaris HOM05D007175 ORTHO05D009032 9.2e-49 198.7 171 55.6
MCO15G710 Micromonas commoda HOM05D007175 ORTHO05D009032 7.3e-46 189.1 385 34.0
Lsat_1_v5_gn_8_80261 Lactuca sativa HOM05D007175 ORTHO05D009032 3.1e-36 157.1 161 52.2
CSS0020086 Camellia sinensis var. sinensis HOM05D007175 ORTHO05D009032 1.3e-34 151.8 171 48.5
CSS0028611 Camellia sinensis var. sinensis HOM05D007175 ORTHO05D009032 1.3e-34 151.8 171 48.5
Sopen04g036620 Solanum pennellii HOM05D007175 ORTHO05D009032 4.9e-34 149.8 137 51.8
Dinv30324 Davidia involucrata HOM05D007175 ORTHO05D009032 6.8e-28 129.4 70 84.3
Dinv30323 Davidia involucrata HOM05D000225 ORTHO05D001817 1.5e-27 128.3 101 58.4
SEGI_21773 Sequoiadendron giganteum HOM05D007175 ORTHO05D009032 2.1e-21 107.8 63 74.6
PGSC0003DMG400025665 Solanum tuberosum HOM05D007175 ORTHO05D009032 8.1e-21 105.9 76 64.5
Pp3c27_7660 Physcomitrium patens HOM05D019562 ORTHO05D021280 1.4e-17 95.1 204 32.4
CBR_g24078 Chara braunii HOM05D019562 ORTHO05D021280 1.3e-15 88.6 207 30.4
AagrBONN_evm.TU.Sc2ySwM_117.1015 Anthoceros agrestis HOM05D019562 ORTHO05D021280 3.0e-15 87.4 224 30.4
Cre07.g321350 Chlamydomonas reinhardtii HOM05D019562 ORTHO05D021280 5.6e-14 83.2 520 20.4
Mapoly0091s0011 Marchantia polymorpha HOM05D019562 ORTHO05D021280 5.8e-11 73.2 75 45.3
Mapoly0022s0145 Marchantia polymorpha HOM05D019562 ORTHO05D021280 1.9e-06 58.2 77 37.7


User provided reference genes

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