Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.7e-177 624.8 316 100.0
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.1e-172 609.0 316 97.2
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 9.7e-170 600.1 340 90.9
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 4.8e-169 597.8 317 96.2
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.1e-157 560.1 291 97.3
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 1.6e-156 556.2 350 81.7
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.1e-154 550.1 291 96.2
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 8.8e-147 523.9 340 79.1
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 1.3e-142 510.0 340 75.3
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 1.2e-138 496.9 339 75.2
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 8.9e-123 444.1 342 66.4
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 1.1e-112 410.6 344 64.2
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 2.4e-112 409.5 342 64.9
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 1.0e-110 404.1 344 61.9
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 2.3e-110 402.9 286 69.9
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 4.7e-108 395.2 341 59.8
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 2.3e-107 392.9 344 59.3
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 3.4e-106 389.0 344 58.4
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 2.9e-105 386.0 344 58.7
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 3.7e-105 385.6 344 59.9
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 3.2e-104 382.5 345 59.4
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 3.5e-103 379.0 344 58.7
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 6.6e-102 374.8 343 56.9
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 8.6e-102 374.4 344 57.3
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 1.1e-101 374.0 355 58.0
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.6e-100 370.2 344 59.3
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 8.1e-100 367.9 340 56.5
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.1e-99 367.5 344 57.6
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.3e-99 366.3 344 57.6
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.2e-97 359.8 344 54.9
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.9e-97 358.6 344 55.2
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 6.4e-97 358.2 344 54.9
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 1.1e-96 357.5 336 55.1
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 1.1e-96 357.5 340 55.6
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 7.1e-96 354.8 346 56.9
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.7e-95 352.8 344 54.9
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 3.5e-95 352.4 337 57.9
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.0e-94 350.9 343 56.3
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.7e-94 350.1 341 55.1
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.3e-94 349.7 343 56.9
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.5e-93 346.3 343 50.4
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.2e-92 344.0 343 55.7
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.6e-92 343.6 343 50.4
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 8.1e-92 341.3 341 54.8
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.4e-91 340.5 343 52.8
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 3.1e-91 339.3 345 54.5
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.4e-90 335.5 343 49.6
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 4.4e-90 335.5 343 54.8
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 5.8e-90 335.1 341 54.0
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 2.9e-89 332.8 340 53.8
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 4.9e-89 332.0 340 54.4
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 6.4e-89 331.6 343 54.8
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 8.4e-89 331.3 341 53.1
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 8.4e-89 331.3 347 52.7
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 8.4e-89 331.3 340 52.4
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 1.1e-88 330.9 340 52.4
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 1.4e-88 330.5 340 51.2
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 2.4e-88 329.7 340 51.5
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 4.2e-88 328.9 340 52.1
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 2.1e-87 326.6 343 52.5
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 2.1e-87 326.6 343 53.9
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 6.0e-87 325.1 339 51.9
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 1.0e-86 324.3 346 51.2
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.0e-86 324.3 343 51.9
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 5.1e-86 322.0 336 53.9
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 5.1e-86 322.0 336 52.7
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 6.6e-86 321.6 344 52.3
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 8.7e-86 321.2 343 53.1
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 8.7e-86 321.2 343 53.1
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 1.1e-85 320.9 337 51.3
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 1.1e-85 320.9 349 51.0
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 1.9e-85 320.1 338 53.0
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 3.3e-85 319.3 340 51.8
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 5.6e-85 318.5 340 50.6
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 1.3e-84 317.4 349 50.7
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 6.2e-84 315.1 291 58.8
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 6.2e-84 315.1 338 50.6
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 1.4e-83 313.9 345 50.4
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 1.4e-83 313.9 327 53.8
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 3.1e-83 312.8 348 50.9
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.0e-82 310.1 347 49.6
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 2.0e-82 310.1 344 49.1
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 9.9e-82 307.8 331 51.1
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 1.7e-81 307.0 347 49.0
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 3.8e-81 305.8 285 56.5
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 1.9e-80 303.5 338 49.7
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 3.2e-80 302.8 340 48.8
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 9.3e-80 301.2 340 47.9
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 1.6e-79 300.4 335 51.6
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 3.5e-79 299.3 337 49.3
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 3.5e-79 299.3 344 47.7
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 3.5e-79 299.3 334 48.5
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 1.7e-78 297.0 340 48.5
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 3.9e-78 295.8 319 51.1
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 5.1e-78 295.4 338 48.8
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 6.6e-78 295.0 288 54.5
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 6.6e-78 295.0 292 53.4
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 6.6e-78 295.0 329 49.5
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 1.1e-77 294.3 344 47.7
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 5.6e-77 292.0 282 53.5
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 9.6e-77 291.2 286 55.2
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 2.8e-76 289.7 340 48.2
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 3.6e-76 289.3 281 54.1
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 8.1e-76 288.1 345 48.7
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.4e-75 287.3 281 54.1
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 3.1e-75 286.2 352 48.3
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 5.3e-75 285.4 345 47.0
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 5.3e-75 285.4 326 49.4
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 1.5e-74 283.9 345 49.0
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 3.4e-74 282.7 341 47.5
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 4.5e-74 282.3 325 49.2
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 2.2e-73 280.0 327 48.9
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 6.4e-73 278.5 320 49.7
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 1.1e-72 277.7 340 47.1
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 4.2e-72 275.8 327 48.6
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 4.2e-72 275.8 264 58.3
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 9.3e-72 274.6 328 48.5
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 4.6e-71 272.3 327 48.9
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.0e-70 271.2 347 44.7
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 6.7e-70 268.5 320 48.1
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 8.7e-70 268.1 333 46.8
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 1.5e-69 267.3 338 45.0
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.8e-67 260.4 328 46.0
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 6.9e-67 258.5 320 48.4
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 2.6e-66 256.5 342 45.3
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 1.1e-64 251.1 327 45.3
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 4.2e-64 249.2 278 48.6
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 4.2e-64 249.2 287 46.7
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 1.5e-61 240.7 344 41.3
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 9.6e-61 238.0 277 46.9
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 4.8e-60 235.7 331 44.1
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 2.5e-56 223.4 199 57.3
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 9.3e-56 221.5 316 40.8
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 5.1e-54 215.7 328 40.9
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 1.5e-53 214.2 290 43.8
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.3e-52 211.1 137 71.5
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.4e-48 197.6 137 68.6
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 7.2e-48 195.3 129 69.8
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 5.7e-45 185.7 325 38.5
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 1.3e-44 184.5 334 38.9
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 1.1e-43 181.4 211 43.6
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.8e-43 180.6 245 42.0
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 4.8e-36 156.0 286 39.5
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 1.8e-35 154.1 322 37.3
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 9.7e-29 131.7 103 62.1
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.8e-22 110.9 162 40.7
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 5.9e-10 69.3 290 27.9
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 1.1e-08 65.1 202 29.7
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.1e-07 60.8 39 76.9


User provided reference genes

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