Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 3020.3 1503 100.0
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 2873.6 1503 95.9
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 2872.4 1503 96.0
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 2809.2 1607 89.0
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 2763.8 1599 88.6
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 2614.3 1492 88.5
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 2325.4 1478 79.4
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 2293.8 1527 76.9
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 2038.5 1530 68.4
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 2020.4 1533 67.8
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1971.8 1534 66.7
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1939.9 1530 65.2
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1909.4 1563 63.8
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1905.2 1557 64.4
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1884.0 1521 64.0
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1879.0 1525 63.5
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1863.6 1527 63.5
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1854.7 1525 63.2
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1854.0 1532 63.6
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1852.8 1542 62.6
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1847.4 1527 63.3
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1831.6 1527 62.8
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1814.3 1554 61.5
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1813.5 1530 62.2
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1770.7 1557 59.7
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1761.9 1499 62.8
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1677.1 1533 58.2
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1675.2 1518 58.3
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1671.8 1414 61.7
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1671.0 1516 58.3
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1669.4 1530 57.6
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1666.4 1545 56.6
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1664.0 1529 57.7
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1660.2 1519 57.6
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1650.6 1520 57.1
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1650.2 1516 57.5
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1649.0 1522 57.1
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1640.6 1528 56.9
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1639.4 1525 56.8
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1625.5 1517 57.0
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1620.1 1553 56.8
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1614.0 1524 57.0
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1614.0 1523 56.3
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1612.8 1526 55.2
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1607.8 1523 55.3
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1596.3 1361 61.8
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1594.7 1511 56.8
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1591.2 1522 55.6
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1589.7 1539 54.8
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1585.5 1541 54.8
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1583.2 1520 56.0
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1576.2 1540 55.7
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1555.8 1523 54.6
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1554.7 1529 54.3
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1553.9 1555 54.2
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1538.1 1540 53.1
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1530.8 1523 54.4
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1530.4 1531 54.1
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1526.9 1542 54.1
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1523.5 1577 53.1
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1521.5 1518 53.6
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1521.1 1551 53.0
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1520.8 1542 53.0
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1511.9 1499 53.0
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1511.1 1520 53.8
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1510.7 1521 53.8
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1510.0 1537 53.0
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1508.4 1522 53.5
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1508.4 1522 53.5
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1504.2 1572 53.0
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1504.2 1523 53.4
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1497.6 1552 53.3
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1496.9 1541 52.9
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1495.7 1516 53.6
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1491.1 1580 52.6
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1481.1 1491 54.4
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1471.8 1545 52.8
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1470.7 1540 52.9
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1464.1 1539 52.3
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1460.3 1539 53.9
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1459.9 1506 51.8
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1453.3 1401 55.2
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1445.6 1540 52.1
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1422.9 1523 51.0
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1419.8 1348 56.7
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1412.9 1528 51.3
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1376.3 1372 55.4
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1360.1 1598 47.8
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1357.8 1316 55.9
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1297.3 1462 49.9
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1256.5 1561 45.2
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1245.3 1530 47.8
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1206.4 1135 57.4
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 0.0e+00 1161.0 1549 43.8
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1146.0 1109 56.6
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 0.0e+00 1142.9 990 59.4
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 6.5e-256 888.6 1634 36.1
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 2.9e-224 783.5 904 49.3
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 2.9e-187 660.6 498 71.3
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 2.7e-185 654.1 497 69.6
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 2.8e-182 644.0 1514 31.2
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.1e-158 564.7 1038 35.9
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 1.2e-145 522.3 687 42.6
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 2.2e-123 448.4 392 58.7
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 3.4e-95 354.8 196 90.3
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.7e-75 289.3 604 32.8
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 2.9e-46 192.2 163 68.1
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 1.6e-41 176.4 107 74.8
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 1.5e-31 143.3 91 70.3
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 2.8e-25 122.5 80 73.8
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 3.7e-25 122.1 81 74.1
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 8.2e-25 120.9 98 61.2
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 6.5e-22 111.3 92 57.6
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.8e-19 103.2 87 56.3
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.8e-19 103.2 87 56.3
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 7.4e-18 97.8 67 77.6
Actinidia33727 Actinidia chinensis HOM05D006693 ORTHO05D008092 3.9e-11 75.5 74 54.1
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 5.9e-07 61.6 96 37.5


User provided reference genes

Program Settings