Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0985 Fragaria x ananassa HOM05D006379 ORTHO05D007830 9.4e-89 330.1 159 100.0
FvH4_5g21760 Fragaria vesca HOM05D006379 ORTHO05D007830 3.4e-70 268.5 190 73.7
FAN18G2446 Fragaria x ananassa HOM05D006379 ORTHO05D007830 9.8e-70 266.9 190 73.2
FAN13G0612 Fragaria x ananassa HOM05D006379 ORTHO05D007830 1.3e-66 256.5 190 71.1
RcHm_v2.0_Chr7g0209251 Rosa chinensis HOM05D006379 ORTHO05D007830 1.0e-63 246.9 191 69.6
FAN08G2939 Fragaria x ananassa HOM05D006379 ORTHO05D007830 4.4e-62 241.5 134 91.0
MD06G1032600 Malus domestica HOM05D006379 ORTHO05D007830 2.7e-51 205.7 192 58.9
MD16G1276600 Malus domestica HOM05D006379 ORTHO05D007830 1.7e-50 203.0 192 58.3
Prupe.5G039500 Prunus persica HOM05D006379 ORTHO05D007830 2.3e-50 202.6 190 58.4
Dinv25202 Davidia involucrata HOM05D006379 ORTHO05D007830 4.4e-46 188.3 190 56.3
Potri.003G090400 Populus trichocarpa HOM05D006379 ORTHO05D007830 1.7e-45 186.4 191 55.5
TAR362G0922 Trochodendron aralioides HOM05D006379 ORTHO05D007830 2.2e-45 186.0 192 54.2
Sabra03G0060200 Salix brachista HOM05D006379 ORTHO05D007830 1.1e-44 183.7 191 54.5
Thecc.03G229900 Theobroma cacao HOM05D006379 ORTHO05D007830 2.4e-44 182.6 190 53.7
Atru.chr6.1742 Acer truncatum HOM05D006379 ORTHO05D007830 3.2e-44 182.2 190 54.7
GSVIVG01013191001 Vitis vinifera HOM05D006379 ORTHO05D007830 4.1e-44 181.8 190 55.3
Dinv28941 Davidia involucrata HOM05D006379 ORTHO05D007830 7.0e-44 181.0 190 55.3
FAN10G0731 Fragaria x ananassa HOM05D000053 ORTHO05D000035 2.0e-43 179.5 102 90.2
Gohir.D12G211700 Gossypium hirsutum HOM05D006379 ORTHO05D007830 3.5e-43 178.7 190 56.3
Gohir.A12G209000 Gossypium hirsutum HOM05D006379 ORTHO05D007830 1.3e-42 176.8 190 55.3
Gorai.008G227300 Gossypium raimondii HOM05D006379 ORTHO05D007830 1.7e-42 176.4 196 54.6
TWI81G0344 Tripterygium wilfordii HOM05D006379 ORTHO05D007830 3.9e-42 175.3 196 54.1
Cfa012418 Carpinus fangiana HOM05D006379 ORTHO05D007830 6.6e-42 174.5 191 51.8
MSTRG.12139 Avicennia marina HOM05D006379 ORTHO05D007830 3.3e-41 172.2 190 55.8
Haze_08258 Corylus avellana HOM05D006379 ORTHO05D007830 4.3e-41 171.8 191 51.3
Sopen08g025630 Solanum pennellii HOM05D006379 ORTHO05D007830 8.1e-40 167.5 193 53.9
Solyc08g077050.3 Solanum lycopersicum HOM05D006379 ORTHO05D007830 1.1e-39 167.2 193 53.9
Actinidia09219 Actinidia chinensis HOM05D006379 ORTHO05D007830 1.8e-39 166.4 172 54.1
FAN10G3344 Fragaria x ananassa HOM05D000053 ORTHO05D000035 4.0e-39 165.2 83 95.2
QL12p006043 Quercus lobata HOM05D006379 ORTHO05D007830 4.0e-39 165.2 186 50.5
Hund14407 Selenicereus undatus HOM05D006379 ORTHO05D007830 4.0e-39 165.2 181 54.1
Manes.15G169000 Manihot esculenta HOM05D006379 ORTHO05D007830 5.2e-39 164.9 190 52.1
CAN.G1659.5 Capsicum annuum HOM05D006379 ORTHO05D007830 6.8e-39 164.5 193 53.4
PGSC0003DMG400017532 Solanum tuberosum HOM05D006379 ORTHO05D007830 1.5e-38 163.3 193 52.8
Ciclev10032819m.g Citrus clementina HOM05D006379 ORTHO05D007830 2.0e-38 162.9 194 52.1
arahy.Tifrunner.gnm1.ann1.QRW6GR Arachis hypogaea HOM05D006379 ORTHO05D007830 4.4e-38 161.8 166 56.0
Aa31LG2G13410 Aethionema arabicum HOM05D006379 ORTHO05D007830 1.7e-37 159.8 190 49.5
CsaV3_3G049310 Cucumis sativus L. HOM05D006379 ORTHO05D007830 1.7e-37 159.8 164 55.5
Nn4g25240 Nelumbo nucifera HOM05D006379 ORTHO05D007830 1.7e-37 159.8 183 52.5
COL.COLO4_17063 Corchorus olitorius HOM05D006379 ORTHO05D007830 3.7e-37 158.7 195 49.2
Sc07g0008750 Simmondsia chinensis HOM05D006379 ORTHO05D007830 3.7e-37 158.7 190 50.5
Duzib084G0654 Durio zibethinus HOM05D006379 ORTHO05D007830 6.4e-37 157.9 191 50.8
BcaB07g32954 Brassica carinata HOM05D006379 ORTHO05D007830 1.1e-36 157.1 173 53.2
AUR62018730 Chenopodium quinoa HOM05D006379 ORTHO05D007830 1.4e-36 156.8 190 50.5
HanXRQChr02g0043511 Helianthus annuus HOM05D006379 ORTHO05D007830 1.4e-36 156.8 191 52.9
BcaC07g37588 Brassica carinata HOM05D006379 ORTHO05D007830 1.9e-36 156.4 187 50.3
CiPaw.12G062300 Carya illinoinensis HOM05D006379 ORTHO05D007830 1.9e-36 156.4 191 49.7
Cc08_g02510 Coffea canephora HOM05D006379 ORTHO05D007830 2.4e-36 156.0 181 53.6
Migut.A01031 Erythranthe guttata HOM05D006379 ORTHO05D007830 3.2e-36 155.6 191 52.4
Eucgr.E00291 Eucalyptus grandis HOM05D006379 ORTHO05D007830 3.2e-36 155.6 152 57.9
Lalb_Chr05g0220541 Lupinus albus HOM05D006379 ORTHO05D007830 3.2e-36 155.6 186 50.5
Sed0015821 Sechium edule HOM05D006379 ORTHO05D007830 3.2e-36 155.6 190 48.9
A08p09010 Brassica napus HOM05D006379 ORTHO05D007830 5.4e-36 154.8 187 49.7
CARHR032000 Cardamine hirsuta HOM05D006379 ORTHO05D007830 7.1e-36 154.5 154 54.5
AUR62007269 Chenopodium quinoa HOM05D006379 ORTHO05D007830 7.1e-36 154.5 180 51.7
THA.LOC104814439 Tarenaya hassleriana HOM05D006379 ORTHO05D007830 7.1e-36 154.5 157 56.1
AL1G48020 Arabidopsis lyrata HOM05D006379 ORTHO05D007830 9.2e-36 154.1 186 50.5
SalBow6G2021 Salvia bowleyana HOM05D006379 ORTHO05D007830 9.2e-36 154.1 151 57.0
A09p33660 Brassica napus HOM05D006379 ORTHO05D007830 1.2e-35 153.7 184 50.0
BraA09t38912Z Brassica rapa HOM05D006379 ORTHO05D007830 1.2e-35 153.7 184 50.0
Thhalv10008887m.g Eutrema salsugineum HOM05D006379 ORTHO05D007830 1.2e-35 153.7 153 56.2
Sp1g28350 Schrenkiella parvula HOM05D006379 ORTHO05D007830 1.2e-35 153.7 186 48.9
ECA240G2404 Erigeron canadensis HOM05D006379 ORTHO05D007830 1.6e-35 153.3 190 52.1
AL1G46800 Arabidopsis lyrata HOM05D006379 ORTHO05D007830 2.1e-35 152.9 186 50.5
CANSAT21G0322 Cannabis sativa HOM05D006379 ORTHO05D007830 2.1e-35 152.9 191 50.3
AT1G32550 Arabidopsis thaliana HOM05D006379 ORTHO05D007830 2.7e-35 152.5 190 49.5
BolC8t47934H Brassica oleracea HOM05D006379 ORTHO05D007830 2.7e-35 152.5 203 46.8
BraA08t32902Z Brassica rapa HOM05D006379 ORTHO05D007830 2.7e-35 152.5 203 46.8
Nitab4.5_0002373g0030 Nicotiana tabacum HOM05D006379 ORTHO05D007830 2.7e-35 152.5 182 53.8
Ah.12g054900 Amaranthus hybridus HOM05D006379 ORTHO05D007830 3.5e-35 152.1 152 56.6
Carub.0001s3096 Capsella rubella HOM05D006379 ORTHO05D007830 3.5e-35 152.1 188 50.5
Hma1.2p1_0991F.1_g245020 Hydrangea macrophylla HOM05D006379 ORTHO05D007830 4.6e-35 151.8 191 50.3
Aqoxy5G02873 Aquilegia oxysepala HOM05D006379 ORTHO05D007830 1.0e-34 150.6 161 52.2
Lj2A242T73 Lonicera japonica HOM05D006379 ORTHO05D007830 2.3e-34 149.4 237 43.0
vmacro14164 Vaccinium macrocarpon HOM05D006379 ORTHO05D007830 3.9e-34 148.7 192 47.9
PGR004G2142 Punica granatum HOM05D006379 ORTHO05D007830 5.1e-34 148.3 193 50.8
Sed0017672 Sechium edule HOM05D006379 ORTHO05D007830 5.1e-34 148.3 174 51.7
TPR.G29030 Trifolium pratense HOM05D006379 ORTHO05D007830 5.1e-34 148.3 185 48.6
Glyma.05G112100 Glycine max HOM05D006379 ORTHO05D007830 1.9e-33 146.4 190 46.8
ATR0796G077 Amborella trichopoda HOM05D006379 ORTHO05D007830 3.3e-33 145.6 133 59.4
DCAR_024971 Daucus carota HOM05D006379 ORTHO05D007830 3.3e-33 145.6 214 46.7
PSO170G4107 Papaver somniferum HOM05D006379 ORTHO05D007830 5.6e-33 144.8 171 50.3
Os03g0685000 Oryza sativa ssp. japonica HOM05D006379 ORTHO05D007830 7.3e-33 144.4 158 51.3
Glyma.17G154900 Glycine max HOM05D006379 ORTHO05D007830 1.2e-32 143.7 184 47.3
Medtr4g098490 Medicago truncatula HOM05D006379 ORTHO05D007830 1.2e-32 143.7 190 50.0
Phvul.003G230200 Phaseolus vulgaris HOM05D006379 ORTHO05D007830 2.1e-32 142.9 170 50.0
PSO357G0477 Papaver somniferum HOM05D006379 ORTHO05D007830 2.8e-32 142.5 171 49.7
Zm00001eb217230 Zea mays HOM05D006379 ORTHO05D007830 3.6e-32 142.1 130 57.7
SGA_v2.0_scaffold104G30206 Striga asiatica HOM05D006379 ORTHO05D007830 6.2e-32 141.4 241 41.1
FAN10G1237 Fragaria x ananassa HOM05D006379 ORTHO05D007830 1.5e-30 136.7 71 94.4
Lj4g0008037 Lotus japonicus HOM05D006379 ORTHO05D007830 2.0e-30 136.3 188 46.3
HPP92_013491 Vanilla planifolia HOM05D006379 ORTHO05D007830 5.8e-30 134.8 130 53.8
Psat4g078880 Pisum sativum HOM05D006379 ORTHO05D007830 7.6e-30 134.4 167 49.1
VMungo0251G0261 Vigna mungo HOM05D000740 ORTHO05D005071 1.3e-29 133.7 169 46.2
unitig_744.g24478 Utricularia gibba HOM05D006379 ORTHO05D007830 2.2e-29 132.9 172 48.3
HPP92_026045 Vanilla planifolia HOM05D006379 ORTHO05D007830 3.7e-29 132.1 160 46.9
SEGI_19144 Sequoiadendron giganteum HOM05D006379 ORTHO05D007830 7.1e-28 127.9 124 54.8
Duzib205G0717 Durio zibethinus HOM05D006379 ORTHO05D007830 6.0e-27 124.8 168 48.2
BcaB04g17950 Brassica carinata HOM05D006379 ORTHO05D007830 1.3e-26 123.6 125 54.4
Ca_22070_v3 Cicer arietinum L. HOM05D006379 ORTHO05D007830 1.3e-26 123.6 244 37.3
SMO134G0248 Selaginella moellendorffii HOM05D006379 ORTHO05D007830 1.3e-26 123.6 126 53.2
MBI18_g03873_MAGBIO Magnolia biondii HOM05D006379 ORTHO05D007830 3.9e-26 122.1 164 45.7
AagrBONN_evm.TU.Sc2ySwM_228.4201 Anthoceros agrestis HOM05D006379 ORTHO05D007830 3.3e-25 119.0 127 52.0
Pp3c17_15760 Physcomitrium patens HOM05D006379 ORTHO05D007830 1.4e-23 113.6 127 47.2
Mapoly0177s0016 Marchantia polymorpha HOM05D006379 ORTHO05D007830 2.4e-23 112.8 149 47.0
Cpa.g.sc71.69 Carica papaya HOM05D006379 ORTHO05D007830 5.2e-23 111.7 53 94.3
Nitab4.5_0001276g0050 Nicotiana tabacum HOM05D006379 ORTHO05D007830 1.5e-22 110.2 182 46.2
BolC5t31928H Brassica oleracea HOM05D006379 ORTHO05D007830 2.6e-22 109.4 54 90.7
C05p32020 Brassica napus HOM05D006379 ORTHO05D007830 9.9e-22 107.5 53 90.6
Rhsim07G0125500 Rhododendron simsii HOM05D006379 ORTHO05D007830 2.9e-21 105.9 117 54.7
Peaxi162Scf00006g00426 Petunia axillaris HOM05D006379 ORTHO05D007830 8.4e-21 104.4 185 42.2
CSS0003148 Camellia sinensis var. sinensis HOM05D006379 ORTHO05D007830 1.6e-19 100.1 126 47.6
EL10Ac5g12142 Beta vulgaris HOM05D006379 ORTHO05D007830 3.5e-19 99.0 155 43.9
CBR_g24310 Chara braunii HOM05D006379 ORTHO05D007830 6.2e-16 88.2 112 45.5
FAN20G0396 Fragaria x ananassa HOM05D006379 ORTHO05D007830 3.1e-15 85.9 41 100.0
CSS0039884 Camellia sinensis var. sinensis HOM05D006379 ORTHO05D007830 4.9e-13 78.6 84 56.0
Nitab4.5_0000089g0020 Nicotiana tabacum HOM05D006379 ORTHO05D007830 1.9e-12 76.6 142 43.7
ClCG09G012080 Citrullus lanatus HOM05D006379 ORTHO05D007830 2.4e-12 76.3 89 48.3
Cre03.g183850 Chlamydomonas reinhardtii HOM05D001025 ORTHO05D007830 3.5e-11 72.4 60 60.0
PRCOL_00004887 Prasinoderma coloniale HOM05D006379 ORTHO05D007830 6.0e-11 71.6 56 64.3
Lsat_1_v5_gn_6_78541 Lactuca sativa HOM05D006379 ORTHO05D007830 3.9e-10 68.9 91 49.5
MELO3C003395.2 Cucumis melo HOM05D006379 ORTHO05D007830 8.7e-10 67.8 79 50.6
MCO07G595 Micromonas commoda HOM05D006379 ORTHO05D007830 1.6e-08 63.5 139 35.3
arahy.Tifrunner.gnm1.ann1.AEP3KG Arachis hypogaea HOM05D006379 ORTHO05D007830 2.1e-08 63.2 89 42.7
arahy.Tifrunner.gnm1.ann1.YTUI1C Arachis hypogaea HOM05D006379 ORTHO05D007830 2.1e-08 63.2 89 42.7
Potri.003G176400 Populus trichocarpa HOM05D006379 ORTHO05D007830 2.1e-08 63.2 59 61.0
ClCG09G012090 Citrullus lanatus HOM05D006379 ORTHO05D007830 5.3e-07 58.5 49 59.2
CSS0002978 Camellia sinensis var. sinensis HOM05D006379 ORTHO05D007830 6.9e-07 58.2 64 54.7
CSS0019133 Camellia sinensis var. sinensis HOM05D006379 ORTHO05D007830 9.0e-07 57.8 26 88.5


User provided reference genes

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