Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0939 Fragaria x ananassa HOM05D007551 ORTHO05D009424 1.6e-119 434.5 518 100.0
FvH4_5g24430 Fragaria vesca HOM05D007551 ORTHO05D009424 4.3e-101 373.2 284 71.8
FAN13G0867 Fragaria x ananassa HOM05D007551 ORTHO05D009424 6.2e-100 369.4 285 73.7
RcHm_v2.0_Chr7g0214821 Rosa chinensis HOM05D007551 ORTHO05D009424 3.8e-73 280.4 259 57.9
Prupe.3G018200 Prunus persica HOM05D007551 ORTHO05D009424 2.4e-67 261.2 284 51.8
RcHm_v2.0_Chr7g0219861 Rosa chinensis HOM05D007551 ORTHO05D009424 4.9e-65 253.4 284 52.8
MD06G1022200 Malus domestica HOM05D007551 ORTHO05D009424 3.4e-58 230.7 282 48.2
Cfa012637 Carpinus fangiana HOM05D007551 ORTHO05D009424 1.9e-56 224.9 287 46.0
Dinv37453 Davidia involucrata HOM05D007551 ORTHO05D009424 7.1e-56 223.0 283 43.5
QL11p054679 Quercus lobata HOM05D007551 ORTHO05D009424 2.7e-55 221.1 294 48.3
CiPaw.12G053700 Carya illinoinensis HOM05D007551 ORTHO05D009424 2.3e-54 218.0 285 43.5
Hma1.2p1_0294F.1_g116420 Hydrangea macrophylla HOM05D007551 ORTHO05D009424 1.6e-52 211.8 290 41.0
GSVIVG01036918001 Vitis vinifera HOM05D007551 ORTHO05D009424 1.8e-51 208.4 284 41.5
Atru.chr6.2125 Acer truncatum HOM05D007551 ORTHO05D009424 9.3e-48 196.1 231 44.2
RcHm_v2.0_Chr4g0405931 Rosa chinensis HOM05D007551 ORTHO05D009424 2.7e-47 194.5 289 42.6
FvH4_4g10410 Fragaria vesca HOM05D007551 ORTHO05D009424 2.3e-46 191.4 289 42.9
FvH4_4g10440 Fragaria vesca HOM05D007551 ORTHO05D009424 2.3e-46 191.4 289 42.9
Rhsim04G0146500 Rhododendron simsii HOM05D007551 ORTHO05D009424 3.0e-46 191.0 282 43.3
Gohir.A12G200366 Gossypium hirsutum HOM05D007551 ORTHO05D009424 1.9e-45 188.3 290 38.6
EL10Ac5g11872 Beta vulgaris HOM05D007551 ORTHO05D009424 2.5e-45 188.0 283 41.3
COL.COLO4_16723 Corchorus olitorius HOM05D007551 ORTHO05D009424 4.3e-45 187.2 285 41.8
Ah.12g056170 Amaranthus hybridus HOM05D000351 ORTHO05D009424 1.6e-44 185.3 286 40.2
PGSC0003DMG402028683 Solanum tuberosum HOM05D007551 ORTHO05D009424 1.6e-44 185.3 289 38.4
TAR362G0203 Trochodendron aralioides HOM05D007551 ORTHO05D009424 2.2e-44 184.9 285 39.3
Gohir.D12G203200 Gossypium hirsutum HOM05D007551 ORTHO05D009424 2.8e-44 184.5 290 37.9
Gorai.N026600 Gossypium raimondii HOM05D007551 ORTHO05D009424 3.7e-44 184.1 287 38.7
Ciclev10000274m.g Citrus clementina HOM05D007551 ORTHO05D009424 6.3e-44 183.3 126 65.9
Sopen11g001880 Solanum pennellii HOM05D007551 ORTHO05D009424 4.1e-43 180.6 289 37.4
Thecc.03G322800 Theobroma cacao HOM05D007551 ORTHO05D009424 4.1e-43 180.6 295 41.0
TAR633G1897 Trochodendron aralioides HOM05D007551 ORTHO05D009424 4.1e-43 180.6 285 38.6
ClCG07G011220 Citrullus lanatus HOM05D007551 ORTHO05D009424 6.9e-43 179.9 286 39.9
Solyc11g005940.3 Solanum lycopersicum HOM05D007551 ORTHO05D009424 6.9e-43 179.9 289 37.7
Nitab4.5_0002667g0100 Nicotiana tabacum HOM05D007551 ORTHO05D009424 9.1e-43 179.5 296 37.8
Nitab4.5_0000856g0020 Nicotiana tabacum HOM05D007551 ORTHO05D009424 2.6e-42 177.9 296 37.8
CSS0048505 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 3.4e-42 177.6 221 44.3
CSS0008559 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 7.7e-42 176.4 221 43.9
Sed0011000 Sechium edule HOM05D007551 ORTHO05D009424 1.0e-41 176.0 289 38.1
CAN.G652.9 Capsicum annuum HOM05D007551 ORTHO05D009424 1.7e-41 175.3 294 37.1
Haze_08024 Corylus avellana HOM05D007551 ORTHO05D009424 3.8e-41 174.1 123 66.7
Sc07g0008330 Simmondsia chinensis HOM05D007551 ORTHO05D009424 3.8e-41 174.1 232 40.1
TWI60G1073 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 5.0e-41 173.7 284 37.0
MELO3C016242.2 Cucumis melo HOM05D007551 ORTHO05D009424 6.5e-41 173.3 284 39.1
CsaV3_4G007030 Cucumis sativus L. HOM05D007551 ORTHO05D009424 8.5e-41 172.9 284 39.1
Peaxi162Scf00619g00022 Petunia axillaris HOM05D007551 ORTHO05D009424 3.2e-40 171.0 285 36.5
VMungo0251G2062 Vigna mungo HOM05D007551 ORTHO05D009424 4.2e-40 170.6 293 39.2
Sed0007434 Sechium edule HOM05D007551 ORTHO05D009424 9.4e-40 169.5 284 38.0
TWI34G0706 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 2.7e-39 167.9 290 37.6
Eucgr.E01036 Eucalyptus grandis HOM05D007551 ORTHO05D009424 4.6e-39 167.2 306 37.3
Lalb_Chr09g0334421 Lupinus albus HOM05D007551 ORTHO05D009424 4.6e-39 167.2 287 40.4
Glyma.16G058700 Glycine max HOM05D007551 ORTHO05D009424 7.9e-39 166.4 293 41.3
AUR62044750 Chenopodium quinoa HOM05D007551 ORTHO05D009424 1.0e-38 166.0 228 42.5
Lalb_Chr05g0229381 Lupinus albus HOM05D007551 ORTHO05D009424 1.4e-38 165.6 222 45.9
Phvul.003G277400 Phaseolus vulgaris HOM05D007551 ORTHO05D009424 8.8e-38 162.9 287 40.8
PGR042G1889 Punica granatum HOM05D007551 ORTHO05D009424 1.1e-37 162.5 285 37.5
Lj4g0019089 Lotus japonicus HOM05D007551 ORTHO05D009424 9.7e-37 159.5 281 38.1
Cpa.g.sc3.432 Carica papaya HOM05D007551 ORTHO05D009424 6.3e-36 156.8 122 56.6
Lsat_1_v5_gn_6_75081 Lactuca sativa HOM05D007551 ORTHO05D009424 2.6e-34 151.4 283 35.3
Potri.003G105700 Populus trichocarpa HOM05D007551 ORTHO05D009424 2.6e-34 151.4 247 36.0
Nn6g33703 Nelumbo nucifera HOM05D007551 ORTHO05D009424 1.0e-33 149.4 224 41.1
Oeu040609.1 Olea europaea HOM05D007551 ORTHO05D009424 1.7e-33 148.7 228 38.6
Lj8C372G5 Lonicera japonica HOM05D007551 ORTHO05D009424 1.1e-32 146.0 114 57.0
Manes.17G006200 Manihot esculenta HOM05D007551 ORTHO05D009424 3.2e-32 144.4 241 36.1
Sabra03G0072700 Salix brachista HOM05D007551 ORTHO05D009424 2.1e-31 141.7 246 35.0
Oeu029773.2 Olea europaea HOM05D007551 ORTHO05D009424 1.8e-30 138.7 128 55.5
PSO210G4217 Papaver somniferum HOM05D007551 ORTHO05D009424 5.2e-30 137.1 295 32.5
BcaB03g11619 Brassica carinata HOM05D007551 ORTHO05D009424 3.3e-29 134.4 223 38.1
Nn1g00676 Nelumbo nucifera HOM05D007551 ORTHO05D009424 4.4e-29 134.0 131 51.9
AL7G34670 Arabidopsis lyrata HOM05D007551 ORTHO05D009424 7.4e-29 133.3 227 36.6
Sp7g18060 Schrenkiella parvula HOM05D007551 ORTHO05D009424 9.7e-29 132.9 286 32.2
PSO210G5788 Papaver somniferum HOM05D007551 ORTHO05D009424 2.8e-28 131.3 295 33.2
Thhalv10024401m.g Eutrema salsugineum HOM05D007551 ORTHO05D009424 6.3e-28 130.2 283 31.8
Aa31LG6G2050 Aethionema arabicum HOM05D007551 ORTHO05D009424 8.2e-28 129.8 288 32.6
AT4G19440 Arabidopsis thaliana HOM05D007551 ORTHO05D009424 8.2e-28 129.8 221 36.7
ECA240G1023 Erigeron canadensis HOM05D000046 ORTHO05D000457 1.1e-27 129.4 127 45.7
Carub.0007s2177 Capsella rubella HOM05D007551 ORTHO05D009424 3.1e-27 127.9 227 36.1
MBI13_g36729_MAGBIO Magnolia biondii HOM05D007551 ORTHO05D009424 7.0e-27 126.7 123 48.8
Oeu044967.1 Olea europaea HOM05D007551 ORTHO05D009424 7.0e-27 126.7 124 51.6
Cc00_g20060 Coffea canephora HOM05D007551 ORTHO05D009424 1.2e-26 125.9 319 30.1
MSTRG.1750 Avicennia marina HOM05D007551 ORTHO05D009424 2.0e-26 125.2 303 30.0
Migut.E01387 Erythranthe guttata HOM05D007551 ORTHO05D009424 1.0e-25 122.9 158 44.3
SalBow1G3247 Salvia bowleyana HOM05D007551 ORTHO05D009424 1.0e-25 122.9 304 29.9
SalBow8G4006 Salvia bowleyana HOM05D007551 ORTHO05D009424 1.0e-25 122.9 304 29.9
C03p81990 Brassica napus HOM05D007551 ORTHO05D009424 2.9e-25 121.3 143 45.5
MD16G1287400 Malus domestica HOM05D007551 ORTHO05D009424 3.8e-25 120.9 71 81.7
BolC3t20473H Brassica oleracea HOM05D007551 ORTHO05D009424 5.0e-25 120.6 99 57.6
Medtr8g071970 Medicago truncatula HOM05D007551 ORTHO05D009424 1.2e-23 115.9 265 33.6
SGA_v2.0_scaffold121G33050 Striga asiatica HOM05D007551 ORTHO05D009424 1.2e-23 115.9 158 42.4
FAN17G3133 Fragaria x ananassa HOM05D007551 ORTHO05D009424 2.2e-20 105.1 117 47.9
TPR.G16813 Trifolium pratense HOM05D007551 ORTHO05D009424 4.8e-20 104.0 202 33.2
Psat4g109680 Pisum sativum HOM05D007551 ORTHO05D009424 2.4e-19 101.7 239 32.2
Cpa.g.c44844 Carica papaya HOM05D007551 ORTHO05D009424 2.3e-14 85.1 97 45.4
Ca_22472_v3 Cicer arietinum L. HOM05D007551 ORTHO05D009424 8.8e-14 83.2 75 53.3
Aqoxy2G03897 Aquilegia oxysepala HOM05D007551 ORTHO05D009424 1.5e-13 82.4 83 45.8
SalBow8G0178 Salvia bowleyana HOM05D007551 ORTHO05D009424 3.4e-13 81.3 71 52.1
HPP92_013845 Vanilla planifolia HOM05D007551 ORTHO05D009424 5.9e-10 70.5 101 37.6
HPP92_013860 Vanilla planifolia HOM05D007551 ORTHO05D009424 5.9e-10 70.5 101 37.6
Psat5g195760 Pisum sativum HOM05D006888 ORTHO05D008371 8.6e-09 66.6 133 30.8
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.9e-08 65.5 80 38.8
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 2.5e-08 65.1 82 45.1
Psat5g196040 Pisum sativum HOM05D006888 ORTHO05D008371 2.5e-08 65.1 127 31.5
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 1.2e-07 62.8 119 32.8
Ah.06g195940 Amaranthus hybridus HOM05D006888 ORTHO05D008371 1.6e-07 62.4 101 38.6
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 2.1e-07 62.0 119 32.8
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 2.1e-07 62.0 79 38.0
Zm00001eb151970 Zea mays HOM05D059268 ORTHO05D009424 2.1e-07 62.0 83 37.3
MD14G1081200 Malus domestica HOM05D007893 ORTHO05D010042 4.7e-07 60.8 87 35.6
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 4.7e-07 60.8 101 35.6
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 4.7e-07 60.8 82 39.0
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 4.7e-07 60.8 102 37.3
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 6.1e-07 60.5 79 39.2
ATR0626G221 Amborella trichopoda HOM05D007551 ORTHO05D009424 6.1e-07 60.5 130 34.6
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 6.1e-07 60.5 82 40.2
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 6.1e-07 60.5 82 40.2
DCAR_012172 Daucus carota HOM05D007893 ORTHO05D010042 8.0e-07 60.1 70 40.0
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 1.0e-06 59.7 82 37.8
AUR62006754 Chenopodium quinoa HOM05D006888 ORTHO05D008371 1.0e-06 59.7 98 40.8
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.0e-06 59.7 82 41.5
SGA_v2.0_scaffold25G10745 Striga asiatica HOM05D007893 ORTHO05D010042 1.0e-06 59.7 110 31.8
TWI75G0531 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.0e-06 59.7 95 31.6
TWI75G0860 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.0e-06 59.7 95 31.6
TWI75G0965 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.0e-06 59.7 95 31.6
TWI75G1402 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.0e-06 59.7 95 31.6
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.0e-06 59.7 95 31.6
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 1.4e-06 59.3 166 23.5
Rhsim13G0082600 Rhododendron simsii HOM05D007750 ORTHO05D009803 1.4e-06 59.3 77 37.7
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.4e-06 59.3 97 30.9
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 1.8e-06 58.9 80 40.0
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 1.8e-06 58.9 83 34.9
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.8e-06 58.9 84 35.7
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 2.3e-06 58.5 165 28.5
Glyma.01G016100 Glycine max HOM05D007893 ORTHO05D010042 2.3e-06 58.5 81 38.3
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 2.3e-06 58.5 114 36.8
CiPaw.12G066600 Carya illinoinensis HOM05D007893 ORTHO05D010042 3.0e-06 58.2 102 31.4
AUR62000398 Chenopodium quinoa HOM05D006888 ORTHO05D008371 3.0e-06 58.2 101 38.6
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 3.0e-06 58.2 104 28.8
Thecc.04G235900 Theobroma cacao HOM05D000424 ORTHO05D000355 4.0e-06 57.8 114 30.7
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 5.2e-06 57.4 85 38.8
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 6.8e-06 57.0 78 33.3
COL.COLO4_16973 Corchorus olitorius HOM05D000070 ORTHO05D007358 6.8e-06 57.0 179 25.7
Duzib212G0217 Durio zibethinus HOM05D000424 ORTHO05D000355 6.8e-06 57.0 104 30.8
FvH4_5g03011 Fragaria vesca HOM05D003900 ORTHO05D005009 6.8e-06 57.0 85 36.5
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 6.8e-06 57.0 87 34.5
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 8.8e-06 56.6 104 26.9


User provided reference genes

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