Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.1e-133 479.9 240 100.0
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 2.0e-130 469.2 240 97.9
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 9.1e-128 460.3 240 95.0
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 7.7e-127 457.2 240 95.4
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 7.7e-127 457.2 240 95.4
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 2.8e-121 438.7 240 91.2
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 2.3e-107 392.5 243 81.1
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 4.0e-91 338.6 238 70.2
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 2.6e-90 335.9 263 66.5
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 3.4e-90 335.5 245 68.6
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 9.8e-90 334.0 238 73.1
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 1.3e-89 333.6 244 67.6
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 4.1e-88 328.6 241 69.7
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 2.0e-87 326.2 218 75.2
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 3.5e-87 325.5 248 68.1
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 1.0e-86 323.9 210 73.8
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 2.3e-86 322.8 242 68.2
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 2.3e-86 322.8 246 66.3
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 5.0e-86 321.6 205 75.6
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 6.6e-86 321.2 246 67.9
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 6.6e-86 321.2 249 66.7
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 1.5e-85 320.1 210 73.3
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 1.5e-85 320.1 243 68.3
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 1.5e-85 320.1 231 68.0
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 2.5e-85 319.3 212 73.6
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 2.5e-85 319.3 242 66.5
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 9.5e-85 317.4 238 68.1
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 1.6e-84 316.6 206 73.8
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 3.6e-84 315.5 246 65.4
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 3.6e-84 315.5 217 69.1
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 3.6e-84 315.5 236 66.1
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 6.2e-84 314.7 246 65.0
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 8.0e-84 314.3 203 74.9
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 2.3e-83 312.8 246 64.2
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 4.0e-83 312.0 223 66.8
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 6.8e-83 311.2 201 73.1
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 6.8e-83 311.2 261 64.4
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 8.9e-83 310.8 242 64.0
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 1.5e-82 310.1 219 68.9
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 3.4e-82 308.9 212 68.9
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 5.8e-82 308.1 228 66.2
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 1.7e-81 306.6 248 64.5
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 2.2e-81 306.2 253 63.6
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 3.7e-81 305.4 241 63.5
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 3.7e-81 305.4 228 66.2
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 8.3e-81 304.3 223 70.0
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 1.4e-80 303.5 221 67.0
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 1.9e-80 303.1 242 64.9
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 1.2e-79 300.4 247 62.3
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 1.2e-79 300.4 181 77.9
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 2.0e-79 299.7 230 66.1
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 3.5e-79 298.9 231 65.4
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 6.0e-79 298.1 246 61.4
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 6.0e-79 298.1 184 78.3
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 7.8e-79 297.7 186 76.9
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 1.0e-78 297.4 208 71.2
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 1.3e-78 297.0 188 75.0
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 1.3e-78 297.0 204 70.6
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 5.0e-78 295.0 234 63.7
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 5.0e-78 295.0 222 64.4
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 6.6e-78 294.7 184 76.6
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 1.5e-77 293.5 203 68.5
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 3.3e-77 292.4 203 70.9
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 3.3e-77 292.4 203 70.0
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 3.3e-77 292.4 203 70.0
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 3.3e-77 292.4 237 64.1
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 9.5e-77 290.8 233 63.5
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 1.2e-76 290.4 178 77.5
Sc04g0003270 Simmondsia chinensis HOM05D006376 ORTHO05D008046 1.6e-76 290.0 176 77.3
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 4.7e-76 288.5 200 70.0
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 6.2e-76 288.1 243 61.3
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 1.1e-75 287.3 203 68.5
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 2.3e-75 286.2 255 59.2
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 6.8e-75 284.6 235 61.7
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 6.8e-75 284.6 229 63.3
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 1.2e-74 283.9 228 62.7
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 2.0e-74 283.1 173 77.5
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 2.6e-74 282.7 247 61.1
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 5.8e-74 281.6 241 61.4
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 5.8e-74 281.6 183 71.6
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 7.5e-74 281.2 195 68.7
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 7.5e-74 281.2 233 62.7
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 9.8e-74 280.8 232 63.4
Ca_17222_v3 Cicer arietinum L. HOM05D006376 ORTHO05D008046 2.2e-73 279.6 162 77.2
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 6.4e-73 278.1 208 65.9
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 6.4e-73 278.1 181 71.8
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 3.2e-72 275.8 205 65.9
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 4.1e-72 275.4 193 67.9
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 9.2e-72 274.2 247 59.9
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 6.0e-71 271.6 230 62.6
Zm00001eb334810 Zea mays HOM05D006376 ORTHO05D008046 1.3e-70 270.4 252 56.7
BcaC07g38909 Brassica carinata HOM05D006376 ORTHO05D008046 3.0e-70 269.2 162 77.2
Os01g0120500 Oryza sativa ssp. japonica HOM05D006376 ORTHO05D008046 1.1e-69 267.3 252 56.7
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 1.5e-69 266.9 214 60.3
ATR0691G291 Amborella trichopoda HOM05D006376 ORTHO05D008046 3.3e-69 265.8 197 66.0
Sp1g16080 Schrenkiella parvula HOM05D006376 ORTHO05D008046 1.4e-67 260.4 150 79.3
HPP92_000150 Vanilla planifolia HOM05D006376 ORTHO05D008046 7.8e-63 244.6 173 67.6
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 1.7e-62 243.4 247 54.3
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 1.2e-60 237.3 174 66.7
MD06G1223100 Malus domestica HOM05D006376 ORTHO05D008046 1.4e-59 233.8 123 87.0
SEGI_27865 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 3.1e-59 232.6 197 56.9
Pp3c8_21790 Physcomitrium patens HOM05D006376 ORTHO05D008046 1.4e-56 223.8 192 56.8
AagrBONN_evm.TU.Sc2ySwM_340.32 Anthoceros agrestis HOM05D006376 ORTHO05D008046 1.7e-54 216.9 209 51.7
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 3.0e-54 216.1 198 56.1
Mapoly0001s0324 Marchantia polymorpha HOM05D006376 ORTHO05D008046 1.0e-46 191.0 180 50.6
SMO116G0316 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.3e-46 190.7 183 50.3
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 3.9e-46 189.1 146 68.5
SMO164G0083 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.1e-43 181.0 175 51.4
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 3.4e-34 149.4 142 61.3
SEGI_30520 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 3.2e-32 142.9 93 66.7
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 4.1e-27 125.9 117 60.7
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 5.3e-27 125.6 130 53.8
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 1.3e-20 104.4 86 67.4
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 1.3e-20 104.4 86 66.3
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 1.3e-20 104.4 86 67.4
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 8.2e-20 101.7 110 55.5
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 1.1e-19 101.3 86 66.3
Cre09.g401350 Chlamydomonas reinhardtii HOM05D006376 ORTHO05D008046 3.1e-19 99.8 174 33.3
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 9.1e-19 98.2 171 34.5
SEGI_17791 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 1.8e-14 84.0 60 60.0
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 3.3e-13 79.7 72 65.3
arahy.Tifrunner.gnm1.ann1.QNQ2AZ Arachis hypogaea HOM05D006376 ORTHO05D008046 3.4e-10 69.7 72 58.3
Dinv17636 Davidia involucrata HOM05D012663 ORTHO05D004533 2.9e-09 66.6 87 44.8
SMO137G0132 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 3.8e-09 66.2 73 53.4
SMO170G0025 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 8.5e-09 65.1 73 52.1
arahy.Tifrunner.gnm1.ann1.PN4BM4 Arachis hypogaea HOM05D001163 ORTHO05D001769 1.1e-08 64.7 72 55.6
VMungo0647G1967 Vigna mungo HOM05D006376 ORTHO05D008046 3.0e-06 56.6 39 76.9


User provided reference genes

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