Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0852 Fragaria x ananassa HOM05D000032 ORTHO05D007444 3.1e-107 391.7 190 100.0
FAN26G0097 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.8e-20 102.4 59 78.0
FAN28G0121 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.4e-19 100.5 59 78.0
FvH4_1g26450 Fragaria vesca HOM05D000007 ORTHO05D000039 4.2e-19 99.0 59 74.6
FvH4_5g29450 Fragaria vesca HOM05D000007 ORTHO05D000039 4.2e-19 99.0 55 83.6
FAN19G1125 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.2e-19 99.0 59 74.6
FAN08G0685 Fragaria x ananassa HOM05D000032 ORTHO05D007444 3.6e-18 95.9 105 59.0
RcHm_v2.0_Chr7g0212761 Rosa chinensis HOM05D000032 ORTHO05D007444 3.6e-18 95.9 105 59.0
FAN13G1431 Fragaria x ananassa HOM05D000032 ORTHO05D007444 3.0e-17 92.8 105 58.1
FvH4_5g23490 Fragaria vesca HOM05D000032 ORTHO05D007444 3.9e-17 92.4 105 58.1
FAN18G0754 Fragaria x ananassa HOM05D000032 ORTHO05D007444 3.9e-17 92.4 105 58.1
FAN18G3167 Fragaria x ananassa HOM05D000032 ORTHO05D007444 3.9e-17 92.4 105 58.1
FAN04G1401 Fragaria x ananassa HOM05D000032 ORTHO05D007444 6.7e-17 91.7 105 58.1
Rhsim07G0134700 Rhododendron simsii HOM05D000032 ORTHO05D007444 1.1e-16 90.9 86 64.0
CANSAT21G0070 Cannabis sativa HOM05D000032 ORTHO05D007444 3.3e-16 89.4 105 52.4
CANSAT21G1764 Cannabis sativa HOM05D000032 ORTHO05D007444 3.3e-16 89.4 105 52.4
GSVIVG01011527001 Vitis vinifera HOM05D000032 ORTHO05D007444 4.3e-16 89.0 105 54.3
Prupe.5G024900 Prunus persica HOM05D000032 ORTHO05D007444 5.7e-16 88.6 105 55.2
ATR0829G024 Amborella trichopoda HOM05D000032 ORTHO05D007444 1.3e-15 87.4 105 54.3
Ah.12g055740 Amaranthus hybridus HOM05D000032 ORTHO05D007444 2.2e-15 86.7 90 58.9
CSS0027581 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D007444 6.3e-15 85.1 105 54.3
MD00G1068700 Malus domestica HOM05D000032 ORTHO05D007444 6.3e-15 85.1 105 54.3
Hund11148 Selenicereus undatus HOM05D000032 ORTHO05D007444 6.3e-15 85.1 105 51.4
Actinidia18142 Actinidia chinensis HOM05D000032 ORTHO05D007444 8.2e-15 84.7 105 54.3
Cc08_g03910 Coffea canephora HOM05D000032 ORTHO05D007444 8.2e-15 84.7 105 54.3
CiPaw.11G100700 Carya illinoinensis HOM05D000032 ORTHO05D007444 1.1e-14 84.3 105 54.3
SGA_v2.0_scaffold144G35861 Striga asiatica HOM05D003080 ORTHO05D003601 1.1e-14 84.3 105 54.3
unitig_747.g21360 Utricularia gibba HOM05D000032 ORTHO05D007444 1.1e-14 84.3 90 57.8
Migut.E01328 Erythranthe guttata HOM05D000032 ORTHO05D007444 1.4e-14 84.0 105 53.3
Aqoxy3G02129 Aquilegia oxysepala HOM05D000032 ORTHO05D007444 2.4e-14 83.2 105 53.3
Haze_08121 Corylus avellana HOM05D000032 ORTHO05D007444 2.4e-14 83.2 105 53.3
Glyma.01G010400 Glycine max HOM05D000032 ORTHO05D007444 2.4e-14 83.2 105 52.4
Glyma.09G210700 Glycine max HOM05D000032 ORTHO05D007444 2.4e-14 83.2 105 52.4
TAR629G2151 Trochodendron aralioides HOM05D000032 ORTHO05D007444 2.4e-14 83.2 105 53.3
Zm00001eb305590 Zea mays HOM05D000032 ORTHO05D007444 2.4e-14 83.2 105 51.4
Dinv06907 Davidia involucrata HOM05D000032 ORTHO05D007444 3.1e-14 82.8 105 52.4
Lj7A125T31 Lonicera japonica HOM05D000032 ORTHO05D007444 3.1e-14 82.8 105 54.3
Ca_25155_v3 Cicer arietinum L. HOM05D000032 ORTHO05D007444 5.3e-14 82.0 105 51.4
PSO063G7107 Papaver somniferum HOM05D000032 ORTHO05D007444 5.3e-14 82.0 115 49.6
PSO782G4822 Papaver somniferum HOM05D000032 ORTHO05D007444 5.3e-14 82.0 115 49.6
Sed0016578 Sechium edule HOM05D000032 ORTHO05D007444 5.3e-14 82.0 105 51.4
ClCG07G002210 Citrullus lanatus HOM05D000032 ORTHO05D007444 6.9e-14 81.6 105 53.3
Os07g0301200 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D007444 6.9e-14 81.6 105 51.4
PGR031G3543 Punica granatum HOM05D000032 ORTHO05D007444 9.1e-14 81.3 105 51.4
QL12p000251 Quercus lobata HOM05D000032 ORTHO05D007444 9.1e-14 81.3 126 46.8
MSTRG.1786 Avicennia marina HOM05D000032 ORTHO05D007444 1.2e-13 80.9 105 52.4
DCAR_008202 Daucus carota HOM05D000032 ORTHO05D007444 1.2e-13 80.9 105 52.4
TWI81G0473 Tripterygium wilfordii HOM05D000032 ORTHO05D007444 1.2e-13 80.9 105 50.5
EL10Ac5g11976 Beta vulgaris HOM05D000032 ORTHO05D007444 1.5e-13 80.5 105 51.4
CDE12G0512 Ceratophyllum demersum HOM05D000032 ORTHO05D007444 1.5e-13 80.5 105 50.5
Sed0012143 Sechium edule HOM05D000032 ORTHO05D007444 1.5e-13 80.5 105 50.5
MELO3C026716.2 Cucumis melo HOM05D000032 ORTHO05D007444 2.0e-13 80.1 105 52.4
CsaV3_3G030450 Cucumis sativus L. HOM05D000032 ORTHO05D007444 2.0e-13 80.1 105 52.4
Nitab4.5_0003568g0010 Nicotiana tabacum HOM05D000032 ORTHO05D007444 2.0e-13 80.1 105 50.5
arahy.Tifrunner.gnm1.ann1.61HMI4 Arachis hypogaea HOM05D000032 ORTHO05D007444 2.6e-13 79.7 105 51.4
arahy.Tifrunner.gnm1.ann1.ZA5ISV Arachis hypogaea HOM05D000032 ORTHO05D007444 2.6e-13 79.7 105 51.4
Eucgr.D02628 Eucalyptus grandis HOM05D000032 ORTHO05D007444 2.6e-13 79.7 105 51.4
Hma1.2p1_0803F.1_g220720 Hydrangea macrophylla HOM05D000032 ORTHO05D007444 2.6e-13 79.7 105 50.5
HPP92_020807 Vanilla planifolia HOM05D000032 ORTHO05D007444 2.6e-13 79.7 105 52.4
Phvul.002G133300 Phaseolus vulgaris HOM05D000032 ORTHO05D007444 4.5e-13 79.0 105 51.4
TWI60G0743 Tripterygium wilfordii HOM05D000032 ORTHO05D007444 4.5e-13 79.0 105 50.5
VMungo1215G3152 Vigna mungo HOM05D000032 ORTHO05D007444 4.5e-13 79.0 105 51.4
HanXRQChr17g0537701 Helianthus annuus HOM05D000032 ORTHO05D007444 5.9e-13 78.6 105 52.4
Lsat_1_v5_gn_1_13001 Lactuca sativa HOM05D000032 ORTHO05D007444 5.9e-13 78.6 105 52.4
Nitab4.5_0000543g0180 Nicotiana tabacum HOM05D000032 ORTHO05D007444 5.9e-13 78.6 105 50.5
Sc01g0006040 Simmondsia chinensis HOM05D000032 ORTHO05D007444 5.9e-13 78.6 105 47.6
Aqoxy3G02131 Aquilegia oxysepala HOM05D000032 ORTHO05D007444 7.7e-13 78.2 105 51.4
Peaxi162Scf00879g00110 Petunia axillaris HOM05D000032 ORTHO05D007444 1.0e-12 77.8 105 49.5
Solyc08g076200.4 Solanum lycopersicum HOM05D000032 ORTHO05D007444 1.3e-12 77.4 105 50.5
Sopen08g024840 Solanum pennellii HOM05D000032 ORTHO05D007444 1.3e-12 77.4 105 50.5
PGSC0003DMG400009295 Solanum tuberosum HOM05D000032 ORTHO05D007444 1.3e-12 77.4 105 50.5
AUR62007381 Chenopodium quinoa HOM05D000032 ORTHO05D007444 1.7e-12 77.0 111 49.5
AUR62018607 Chenopodium quinoa HOM05D000032 ORTHO05D007444 1.7e-12 77.0 111 49.5
Manes.17G010800 Manihot esculenta HOM05D000032 ORTHO05D007444 1.7e-12 77.0 105 49.5
Medtr5g027840 Medicago truncatula HOM05D000032 ORTHO05D007444 1.7e-12 77.0 105 49.5
Psat2g139400 Pisum sativum HOM05D000032 ORTHO05D007444 1.7e-12 77.0 105 49.5
TPR.G24223 Trifolium pratense HOM05D000032 ORTHO05D007444 1.7e-12 77.0 105 49.5
Lj2g0008608 Lotus japonicus HOM05D000032 ORTHO05D007444 2.9e-12 76.3 105 50.5
Gohir.A03G000021 Gossypium hirsutum HOM05D000032 ORTHO05D007444 5.0e-12 75.5 105 47.6
Gohir.D03G177200 Gossypium hirsutum HOM05D000032 ORTHO05D007444 5.0e-12 75.5 105 47.6
Gorai.003G186400 Gossypium raimondii HOM05D000032 ORTHO05D007444 5.0e-12 75.5 105 47.6
Thecc.03G313300 Theobroma cacao HOM05D000032 ORTHO05D007444 5.0e-12 75.5 105 47.6
Duzib068G1248 Durio zibethinus HOM05D000032 ORTHO05D007444 6.5e-12 75.1 105 47.6
Lalb_Chr16g0380911 Lupinus albus HOM05D000032 ORTHO05D007444 6.5e-12 75.1 105 49.5
MD06G1023800 Malus domestica HOM05D000032 ORTHO05D007444 6.5e-12 75.1 114 44.7
COL.COLO4_16900 Corchorus olitorius HOM05D000032 ORTHO05D007444 8.5e-12 74.7 105 47.6
ECA246G2233 Erigeron canadensis HOM05D000032 ORTHO05D007444 8.5e-12 74.7 105 51.4
Cpa.g.sc16.14 Carica papaya HOM05D000032 ORTHO05D007444 1.9e-11 73.6 105 47.6
FvH4_7g11690 Fragaria vesca HOM05D000007 ORTHO05D000039 9.4e-11 71.2 51 60.8
Oeu017102.2 Olea europaea HOM05D000032 ORTHO05D007444 9.4e-11 71.2 123 43.1
FAN03G2844 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.2e-10 70.9 63 52.4
FAN08G1202 Fragaria x ananassa HOM05D000032 ORTHO05D007444 2.1e-10 70.1 53 73.6
Potri.003G098800 Populus trichocarpa HOM05D000032 ORTHO05D007444 2.1e-10 70.1 105 48.6
SEGI_15594 Sequoiadendron giganteum HOM05D000032 ORTHO05D007444 2.1e-10 70.1 105 46.7
Lalb_Chr09g0325341 Lupinus albus HOM05D000032 ORTHO05D007444 3.6e-10 69.3 105 47.6
FAN06G0615 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.7e-10 68.9 82 46.3
Mapoly0045s0142 Marchantia polymorpha HOM05D000032 ORTHO05D007444 4.7e-10 68.9 105 45.7
RcHm_v2.0_Chr3g0482251 Rosa chinensis HOM05D000007 ORTHO05D000039 4.7e-10 68.9 51 62.7
AagrBONN_evm.TU.Sc2ySwM_228.2969 Anthoceros agrestis HOM05D000032 ORTHO05D007444 6.1e-10 68.6 113 42.5
Ciclev10000690m.g Citrus clementina HOM05D000032 ORTHO05D007444 6.1e-10 68.6 105 47.6
FAN03G1966 Fragaria x ananassa HOM05D004096 ORTHO05D000898 7.9e-10 68.2 55 60.0
Pp3c21_4750 Physcomitrium patens HOM05D000032 ORTHO05D007444 7.9e-10 68.2 106 43.4
Sabra03G0066800 Salix brachista HOM05D000032 ORTHO05D007444 7.9e-10 68.2 105 46.7
FAN10G0938 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.0e-09 67.8 59 57.6
FAN18G0301 Fragaria x ananassa HOM05D000032 ORTHO05D007444 1.0e-09 67.8 57 63.2
RcHm_v2.0_Chr3g0482231 Rosa chinensis HOM05D000007 ORTHO05D000039 1.0e-09 67.8 77 46.8
FvH4_7g11650 Fragaria vesca HOM05D000007 ORTHO05D020693 1.4e-09 67.4 59 57.6
FAN04G0888 Fragaria x ananassa HOM05D000032 ORTHO05D007444 1.4e-09 67.4 53 67.9
FAN06G0762 Fragaria x ananassa HOM05D000007 ORTHO05D020693 1.4e-09 67.4 51 58.8
BcaB07g32858 Brassica carinata HOM05D000032 ORTHO05D007444 3.9e-09 65.9 105 46.7
BcaC05g27222 Brassica carinata HOM05D000032 ORTHO05D007444 3.9e-09 65.9 105 46.7
A09p34220 Brassica napus HOM05D000032 ORTHO05D007444 3.9e-09 65.9 105 46.7
C05p31310 Brassica napus HOM05D000032 ORTHO05D007444 3.9e-09 65.9 105 46.7
BraA09t38970Z Brassica rapa HOM05D000032 ORTHO05D007444 3.9e-09 65.9 105 46.7
Atru.chr6.1559 Acer truncatum HOM05D000032 ORTHO05D007444 6.7e-09 65.1 105 45.7
FAN01G3153 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.7e-09 65.1 51 54.9
FAN06G1206 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.7e-09 65.1 51 54.9
FAN10G1832 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.7e-09 65.1 51 54.9
FAN10G3302 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.7e-09 65.1 51 54.9
FAN03G2643 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.8e-09 64.7 51 54.9
FAN06G0669 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.8e-09 64.7 51 54.9
FAN06G4010 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.8e-09 64.7 51 54.9
CARHR031300 Cardamine hirsuta HOM05D000032 ORTHO05D007444 1.1e-08 64.3 105 47.6
AT1G31970 Arabidopsis thaliana HOM05D000032 ORTHO05D007444 1.5e-08 63.9 105 44.8
THA.LOC104798505 Tarenaya hassleriana HOM05D000032 ORTHO05D007444 1.5e-08 63.9 105 44.8
BcaB03g13775 Brassica carinata HOM05D000032 ORTHO05D090795 2.0e-08 63.5 105 43.8
FAN23G0519 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.0e-08 63.5 63 54.0
Sp1g27680 Schrenkiella parvula HOM05D000032 ORTHO05D007444 2.0e-08 63.5 105 44.8
AL1G46050 Arabidopsis lyrata HOM05D000032 ORTHO05D007444 2.6e-08 63.2 105 45.7
Carub.0001s3031 Capsella rubella HOM05D000032 ORTHO05D007444 2.6e-08 63.2 105 45.7
Cfa012545 Carpinus fangiana HOM05D000032 ORTHO05D007444 2.6e-08 63.2 65 58.5
Thhalv10007300m.g Eutrema salsugineum HOM05D000032 ORTHO05D007444 2.6e-08 63.2 105 45.7
vmacro14213 Vaccinium macrocarpon HOM05D000032 ORTHO05D007444 3.3e-08 62.8 112 40.2
BcaC07g37639 Brassica carinata HOM05D000032 ORTHO05D007444 4.4e-08 62.4 105 45.7
FAN10G3851 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.4e-08 62.4 51 52.9
Aa31LG2G14100 Aethionema arabicum HOM05D000032 ORTHO05D007444 7.4e-08 61.6 105 43.8
RcHm_v2.0_Chr1g0350191 Rosa chinensis HOM05D000007 ORTHO05D000039 7.4e-08 61.6 51 54.9
FAN01G1772 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.8e-07 59.7 59 50.8
A08p09400 Brassica napus HOM05D000032 ORTHO05D007444 4.8e-07 58.9 106 42.5
BolC5t31854H Brassica oleracea HOM05D000032 ORTHO05D007444 4.8e-07 58.9 123 39.8
CBR_g12371 Chara braunii HOM05D000032 ORTHO05D007444 4.8e-07 58.9 104 41.3
BraA08t32938Z Brassica rapa HOM05D000032 ORTHO05D007444 6.3e-07 58.5 116 41.4
FvH4_5g27750 Fragaria vesca HOM05D032394 ORTHO05D035686 8.2e-07 58.2 58 51.7
FAN06G3374 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.1e-06 57.8 38 71.1
FAN06G3725 Fragaria x ananassa HOM05D001754 ORTHO05D000039 1.1e-06 57.8 38 71.1
FAN10G2810 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.1e-06 57.8 38 71.1
SMO141G0072 Selaginella moellendorffii HOM05D000032 ORTHO05D007444 1.4e-06 57.4 106 35.8
SHI07205 Sapria himalayana HOM05D000032 ORTHO05D007444 1.8e-06 57.0 113 37.2
MCO13G566 Micromonas commoda HOM05D000032 ORTHO05D007444 2.4e-06 56.6 86 43.0
FAN01G1300 Fragaria x ananassa HOM05D000007 ORTHO05D000039 5.3e-06 55.5 63 44.4
Cfa026160 Carpinus fangiana HOM05D000032 ORTHO05D002561 9.1e-06 54.7 104 38.5
Zm00001eb143850 Zea mays HOM05D000032 ORTHO05D002561 9.1e-06 54.7 104 37.5


User provided reference genes

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