Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.4e-310 1068.9 609 100.0
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 3.2e-294 1014.6 615 94.3
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 6.0e-293 1010.4 615 93.7
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 6.0e-293 1010.4 615 93.7
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 7.3e-291 1003.4 615 93.5
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 2.5e-230 802.4 639 80.6
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.9e-113 414.1 714 51.0
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 2.0e-110 404.1 711 49.9
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 3.7e-109 399.8 712 48.0
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 3.1e-108 396.7 675 49.8
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 4.8e-101 372.9 689 47.0
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 5.3e-100 369.4 710 47.6
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 2.7e-99 367.1 706 45.5
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 4.5e-99 366.3 667 48.9
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 3.8e-98 363.2 711 45.3
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 1.5e-97 361.3 680 45.9
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 3.0e-95 353.6 662 45.3
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 5.7e-94 349.4 669 45.4
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 3.7e-93 346.7 693 45.6
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 1.4e-92 344.7 575 50.1
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 3.5e-91 340.1 687 45.1
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 4.5e-91 339.7 687 44.8
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.0e-90 338.6 657 46.7
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 3.2e-89 333.6 654 47.4
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 7.2e-89 332.4 694 45.4
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 9.5e-89 332.0 693 43.4
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.2e-88 331.6 690 44.5
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 1.2e-88 331.6 701 44.9
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 1.8e-87 327.8 693 42.4
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 8.8e-87 325.5 694 43.4
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 1.5e-86 324.7 696 45.5
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 2.6e-86 323.9 710 45.1
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 2.6e-86 323.9 704 45.3
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 5.7e-86 322.8 687 43.5
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 2.8e-85 320.5 586 47.4
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 4.9e-85 319.7 691 45.4
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 4.1e-84 316.6 682 43.4
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 7.8e-83 312.4 697 43.0
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 7.8e-83 312.4 700 42.6
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.3e-82 311.6 649 44.1
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.9e-81 307.8 649 42.8
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 3.3e-81 307.0 687 42.8
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 5.6e-81 306.2 606 45.7
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.8e-80 303.9 694 42.4
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 6.8e-79 299.3 695 43.2
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 6.8e-79 299.3 660 41.7
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 2.6e-78 297.4 697 40.6
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 5.7e-78 296.2 663 41.8
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.7e-77 294.7 501 47.1
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.4e-76 290.8 608 45.4
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 2.4e-76 290.8 711 44.3
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 3.2e-76 290.4 661 44.0
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 4.6e-75 286.6 591 43.1
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 1.3e-74 285.0 634 39.4
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 2.5e-73 280.8 637 43.0
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 2.8e-72 277.3 624 44.1
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 3.6e-72 276.9 615 43.9
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 4.7e-72 276.6 672 41.1
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 3.1e-71 273.9 637 42.7
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 8.9e-71 272.3 568 44.0
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 2.6e-70 270.8 635 41.3
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 3.4e-70 270.4 672 39.9
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 1.3e-69 268.5 680 38.8
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 6.4e-69 266.2 638 39.8
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 8.3e-69 265.8 640 43.3
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 8.3e-69 265.8 672 38.7
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 4.1e-68 263.5 714 42.0
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 5.4e-68 263.1 686 42.4
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 9.2e-68 262.3 640 42.5
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 9.2e-68 262.3 677 39.9
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.0e-67 261.2 596 41.6
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 3.5e-67 260.4 674 39.3
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 6.0e-67 259.6 589 44.5
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 3.6e-64 250.4 645 43.6
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 2.3e-63 247.7 600 40.2
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 3.4e-62 243.8 616 40.1
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 3.4e-62 243.8 625 37.3
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 9.9e-62 242.3 668 39.5
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 1.3e-61 241.9 704 36.6
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 3.7e-61 240.4 663 40.1
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 6.4e-61 239.6 597 43.4
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 1.4e-60 238.4 699 39.6
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 1.9e-60 238.0 669 39.6
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 1.6e-59 235.0 669 38.9
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 7.8e-59 232.6 623 39.3
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 2.3e-58 231.1 642 40.2
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 2.5e-57 227.6 582 43.3
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 9.5e-57 225.7 560 42.0
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 1.2e-56 225.3 634 36.0
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.1e-55 222.2 638 36.8
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 5.2e-55 219.9 377 45.1
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 5.2e-55 219.9 651 35.5
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.1e-52 212.2 716 36.3
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.6e-51 208.4 673 34.9
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 2.1e-51 208.0 600 36.3
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.3e-50 205.3 665 35.2
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 3.0e-50 204.1 705 35.6
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 3.9e-50 203.8 668 35.8
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.5e-49 201.1 527 38.7
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 9.6e-49 199.1 323 49.2
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.6e-48 198.4 630 34.0
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 3.6e-48 197.2 687 38.0
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 6.2e-48 196.4 598 35.6
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.1e-47 195.7 636 35.7
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 3.1e-47 194.1 672 38.1
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.0e-47 193.7 668 36.1
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 6.9e-47 193.0 675 33.9
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.0e-46 191.4 598 34.3
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 4.4e-46 190.3 720 33.8
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 9.9e-46 189.1 648 35.3
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 9.9e-46 189.1 675 33.2
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 1.3e-45 188.7 604 37.9
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 3.8e-45 187.2 593 33.7
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 3.8e-45 187.2 455 45.5
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 1.4e-44 185.3 702 36.9
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.9e-44 184.9 306 51.3
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 5.4e-44 183.3 612 35.3
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 4.6e-43 180.3 684 34.8
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 6.0e-43 179.9 448 40.4
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 3.9e-42 177.2 613 33.6
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 5.1e-42 176.8 641 33.5
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 4.3e-41 173.7 654 36.7
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 4.3e-41 173.7 629 35.9
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.6e-40 171.8 614 33.9
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 2.8e-40 171.0 648 33.5
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.8e-40 171.0 655 37.4
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 1.1e-39 169.1 660 36.5
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 5.3e-39 166.8 523 35.4
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.0e-38 164.9 179 56.4
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 2.6e-38 164.5 620 34.4
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.9e-37 161.0 648 33.8
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.9e-36 158.3 196 52.6
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.9e-36 158.3 611 33.1
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 2.4e-36 157.9 353 39.1
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 2.7e-35 154.5 523 35.6
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 1.3e-34 152.1 648 32.1
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 8.7e-34 149.4 422 44.8
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 4.3e-33 147.1 330 43.6
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 6.2e-32 143.3 606 29.5
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 5.3e-31 140.2 417 40.8
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.3e-29 135.6 650 31.2
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.9e-29 134.4 375 35.2
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.0e-26 124.4 727 27.6
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 3.9e-26 124.0 633 32.9
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 1.9e-25 121.7 492 31.5
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 3.4e-22 110.9 127 54.3
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 1.4e-20 105.5 485 30.1
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 1.4e-20 105.5 485 30.1
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.9e-20 105.1 474 30.2
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 4.2e-20 104.0 495 32.1
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 1.6e-19 102.1 482 33.8
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.7e-19 101.3 117 55.6
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.3e-18 99.0 141 48.2
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.5e-17 95.5 568 27.5
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 1.9e-17 95.1 523 30.6
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 3.7e-16 90.9 184 38.6
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 7.6e-14 83.2 384 29.9
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 3.8e-13 80.9 79 55.7
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.5e-12 78.2 224 31.7
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 4.2e-12 77.4 156 41.7
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 3.9e-10 70.9 60 71.7
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 3.3e-09 67.8 253 30.8
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 4.8e-08 63.9 210 31.4
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 8.2e-08 63.2 529 27.6
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 1.8e-07 62.0 55 63.6
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 4.1e-07 60.8 165 36.4
SEGI_22138 Sequoiadendron giganteum HOM05D003795 ORTHO05D004308 1.5e-06 58.9 628 29.6
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.0e-06 58.5 53 58.5
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 4.5e-06 57.4 48 68.8
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 5.9e-06 57.0 36 83.3


User provided reference genes

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