Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0747 Fragaria x ananassa HOM05D003607 ORTHO05D004049 6.4e-82 307.4 157 100.0
FAN28G1779 Fragaria x ananassa HOM05D003607 ORTHO05D004049 2.7e-56 222.2 117 100.0
FAN23G0012 Fragaria x ananassa HOM05D003607 ORTHO05D004049 4.6e-56 221.5 118 98.3
FAN19G1909 Fragaria x ananassa HOM05D003607 ORTHO05D004049 6.1e-56 221.1 118 97.5
FAN26G0628 Fragaria x ananassa HOM05D003607 ORTHO05D004049 4.3e-54 214.9 118 94.9
RcHm_v2.0_Chr3g0491231 Rosa chinensis HOM05D003607 ORTHO05D004049 9.1e-52 207.2 118 90.7
CANSAT80G1935 Cannabis sativa HOM05D003607 ORTHO05D004049 3.7e-45 185.3 118 80.5
MD12G1023700 Malus domestica HOM05D003607 ORTHO05D004049 1.1e-44 183.7 118 79.7
FAN09G3360 Fragaria x ananassa HOM05D003607 ORTHO05D004049 3.1e-44 182.2 119 79.0
Prupe.7G112800 Prunus persica HOM05D003607 ORTHO05D004049 4.1e-44 181.8 118 78.0
MD14G1020900 Malus domestica HOM05D003607 ORTHO05D004049 5.3e-44 181.4 118 78.8
RcHm_v2.0_Chr3g0472991 Rosa chinensis HOM05D003607 ORTHO05D004049 5.3e-44 181.4 118 78.8
FAN02G1747 Fragaria x ananassa HOM05D003607 ORTHO05D004049 1.2e-43 180.3 118 78.8
FAN05G2511 Fragaria x ananassa HOM05D003607 ORTHO05D004049 1.2e-43 180.3 118 78.8
FAN14G5030 Fragaria x ananassa HOM05D003607 ORTHO05D004049 1.2e-43 180.3 118 78.8
Haze_19593 Corylus avellana HOM05D003607 ORTHO05D004049 1.5e-43 179.9 118 77.1
Cfa016592 Carpinus fangiana HOM05D003607 ORTHO05D004049 4.5e-43 178.3 118 75.4
FAN05G4077 Fragaria x ananassa HOM05D003607 ORTHO05D004049 5.9e-43 177.9 118 78.0
CsaV3_3G037170 Cucumis sativus L. HOM05D003607 ORTHO05D004049 1.1e-41 173.7 128 69.5
CiPaw.09G012700 Carya illinoinensis HOM05D003607 ORTHO05D004049 4.2e-41 171.8 118 73.7
MELO3C009463.2 Cucumis melo HOM05D003607 ORTHO05D004049 5.5e-41 171.4 118 72.9
CiPaw.10G008300 Carya illinoinensis HOM05D003607 ORTHO05D004049 7.2e-41 171.0 118 72.9
Sabra09G0120500 Salix brachista HOM05D003607 ORTHO05D004049 9.4e-41 170.6 118 70.3
ClCG10G019070 Citrullus lanatus HOM05D003607 ORTHO05D004049 1.2e-40 170.2 118 72.0
Potri.004G190800 Populus trichocarpa HOM05D003607 ORTHO05D004049 2.1e-40 169.5 118 71.2
Manes.09G056401 Manihot esculenta HOM05D003607 ORTHO05D004049 2.7e-40 169.1 120 70.8
Sed0001726 Sechium edule HOM05D003607 ORTHO05D004049 4.7e-40 168.3 118 71.2
Ca_08996_v3 Cicer arietinum L. HOM05D003607 ORTHO05D004049 6.1e-40 167.9 118 72.9
Manes.08G024200 Manihot esculenta HOM05D003607 ORTHO05D004049 6.1e-40 167.9 118 70.3
Sed0018362 Sechium edule HOM05D003607 ORTHO05D004049 6.1e-40 167.9 118 70.3
TWI74G0563 Tripterygium wilfordii HOM05D003607 ORTHO05D004049 6.1e-40 167.9 118 72.0
Medtr7g104430 Medicago truncatula HOM05D003607 ORTHO05D004049 7.9e-40 167.5 118 72.9
Sabra04G0127600 Salix brachista HOM05D003607 ORTHO05D004049 7.9e-40 167.5 118 71.2
Atru.chr8.1565 Acer truncatum HOM05D003607 ORTHO05D004049 1.0e-39 167.2 118 70.3
TPR.G19550 Trifolium pratense HOM05D003607 ORTHO05D004049 1.0e-39 167.2 118 72.0
COL.COLO4_29767 Corchorus olitorius HOM05D003607 ORTHO05D004049 1.8e-39 166.4 121 68.6
Lalb_Chr01g0018221 Lupinus albus HOM05D003607 ORTHO05D004049 1.8e-39 166.4 118 71.2
PGR004G0926 Punica granatum HOM05D003607 ORTHO05D004049 3.0e-39 165.6 120 71.7
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 3.0e-39 165.6 118 69.5
Gohir.A01G207100 Gossypium hirsutum HOM05D003607 ORTHO05D004049 3.9e-39 165.2 119 71.4
QL07p039292 Quercus lobata HOM05D003607 ORTHO05D004049 3.9e-39 165.2 118 70.3
TWI53G1341 Tripterygium wilfordii HOM05D003607 ORTHO05D004049 3.9e-39 165.2 118 71.2
Gohir.D01G196500 Gossypium hirsutum HOM05D003607 ORTHO05D004049 5.2e-39 164.9 119 71.4
Potri.009G152600 Populus trichocarpa HOM05D003607 ORTHO05D004049 5.2e-39 164.9 118 67.8
Ciclev10012570m.g Citrus clementina HOM05D003607 ORTHO05D004049 6.7e-39 164.5 118 69.5
AT3G52760 Arabidopsis thaliana HOM05D003607 ORTHO05D004049 1.1e-38 163.7 119 70.6
Gorai.002G240700 Gossypium raimondii HOM05D003607 ORTHO05D004049 1.1e-38 163.7 119 70.6
arahy.Tifrunner.gnm1.ann1.0UXM82 Arachis hypogaea HOM05D003607 ORTHO05D004049 1.5e-38 163.3 137 63.5
CARHR162640 Cardamine hirsuta HOM05D003607 ORTHO05D004049 1.5e-38 163.3 119 70.6
Carub.0005s1924 Capsella rubella HOM05D003607 ORTHO05D004049 2.0e-38 162.9 119 69.7
Lj1g0001702 Lotus japonicus HOM05D003607 ORTHO05D004049 2.0e-38 162.9 118 69.5
Psat3g033800 Pisum sativum HOM05D003607 ORTHO05D004049 2.0e-38 162.9 118 71.2
AL5G33530 Arabidopsis lyrata HOM05D003607 ORTHO05D004049 2.6e-38 162.5 119 69.7
AT2G36300 Arabidopsis thaliana HOM05D003607 ORTHO05D004049 2.6e-38 162.5 119 70.6
CARHR130570 Cardamine hirsuta HOM05D003607 ORTHO05D004049 2.6e-38 162.5 119 70.6
Cpa.g.sc5.37 Carica papaya HOM05D003607 ORTHO05D004049 2.6e-38 162.5 119 71.4
Duzib128G1249 Durio zibethinus HOM05D003607 ORTHO05D004049 2.6e-38 162.5 119 69.7
THA.LOC104804679 Tarenaya hassleriana HOM05D003607 ORTHO05D004049 2.6e-38 162.5 119 70.6
Sp4g18520 Schrenkiella parvula HOM05D003607 ORTHO05D004049 3.3e-38 162.2 119 70.6
Duzib093G0509 Durio zibethinus HOM05D003607 ORTHO05D004049 4.4e-38 161.8 119 68.9
Duzib106G1766 Durio zibethinus HOM05D000444 ORTHO05D004049 4.4e-38 161.8 119 68.9
Eucgr.A01507 Eucalyptus grandis HOM05D003607 ORTHO05D004049 4.4e-38 161.8 123 67.5
AL4G32410 Arabidopsis lyrata HOM05D003607 ORTHO05D004049 5.7e-38 161.4 119 69.7
Carub.0004s1805 Capsella rubella HOM05D003607 ORTHO05D004049 5.7e-38 161.4 119 69.7
Thhalv10010984m.g Eutrema salsugineum HOM05D003607 ORTHO05D004049 5.7e-38 161.4 119 69.7
Sp5g09570 Schrenkiella parvula HOM05D003607 ORTHO05D004049 5.7e-38 161.4 119 70.6
arahy.Tifrunner.gnm1.ann1.66EI83 Arachis hypogaea HOM05D003607 ORTHO05D004049 7.4e-38 161.0 118 70.3
BcaC02g11742 Brassica carinata HOM05D003607 ORTHO05D004049 7.4e-38 161.0 119 68.9
C04p11820 Brassica napus HOM05D003607 ORTHO05D004049 7.4e-38 161.0 119 68.9
BolC4t22831H Brassica oleracea HOM05D003607 ORTHO05D004049 7.4e-38 161.0 119 68.9
Thhalv10017131m.g Eutrema salsugineum HOM05D003607 ORTHO05D004049 7.4e-38 161.0 119 69.7
Lsat_1_v5_gn_8_23940 Lactuca sativa HOM05D003607 ORTHO05D004049 7.4e-38 161.0 161 52.8
TAR633G2199 Trochodendron aralioides HOM05D003607 ORTHO05D004049 1.3e-37 160.2 118 65.3
VMungo1383G3486 Vigna mungo HOM05D003607 ORTHO05D004049 1.3e-37 160.2 118 69.5
BcaB02g09364 Brassica carinata HOM05D003607 ORTHO05D004049 1.7e-37 159.8 119 68.9
A05p09560 Brassica napus HOM05D003607 ORTHO05D004049 1.7e-37 159.8 119 68.9
BraA05t19909Z Brassica rapa HOM05D003607 ORTHO05D004049 1.7e-37 159.8 119 68.9
BcaB06g28927 Brassica carinata HOM05D003607 ORTHO05D004049 2.8e-37 159.1 119 68.1
MBI01_g04060_MAGBIO Magnolia biondii HOM05D003607 ORTHO05D004049 2.8e-37 159.1 118 66.1
Glyma.19G194200 Glycine max HOM05D003607 ORTHO05D004049 3.7e-37 158.7 118 68.6
TAR369G0187 Trochodendron aralioides HOM05D003607 ORTHO05D004049 3.7e-37 158.7 118 66.1
THA.LOC104823483 Tarenaya hassleriana HOM05D003607 ORTHO05D004049 4.8e-37 158.3 119 69.7
Dinv09603 Davidia involucrata HOM05D003607 ORTHO05D004049 6.3e-37 157.9 118 64.4
Lj7A388T89 Lonicera japonica HOM05D003607 ORTHO05D004049 6.3e-37 157.9 118 65.3
Aqoxy4G02802 Aquilegia oxysepala HOM05D003607 ORTHO05D004049 8.2e-37 157.5 118 63.6
Glyma.03G194400 Glycine max HOM05D003607 ORTHO05D004049 8.2e-37 157.5 118 67.8
Hma1.2p1_0802F.1_g220470 Hydrangea macrophylla HOM05D003607 ORTHO05D004049 8.2e-37 157.5 118 64.4
DCAR_028954 Daucus carota HOM05D003607 ORTHO05D004049 1.1e-36 157.1 118 62.7
Aa31LG5G21430 Aethionema arabicum HOM05D003607 ORTHO05D004049 1.4e-36 156.8 119 67.2
CSS0005550 Camellia sinensis var. sinensis HOM05D003607 ORTHO05D004049 1.8e-36 156.4 124 61.3
DCAR_013921 Daucus carota HOM05D003607 ORTHO05D004049 1.8e-36 156.4 118 63.6
DCAR_013922 Daucus carota HOM05D003607 ORTHO05D004049 1.8e-36 156.4 118 63.6
DCAR_032378 Daucus carota HOM05D003607 ORTHO05D004049 1.8e-36 156.4 118 63.6
HanXRQChr08g0217791 Helianthus annuus HOM05D003607 ORTHO05D004049 1.8e-36 156.4 118 63.6
CSS0036632 Camellia sinensis var. sinensis HOM05D003607 ORTHO05D004049 2.4e-36 156.0 124 61.3
Lsat_1_v5_gn_0_7620 Lactuca sativa HOM05D003607 ORTHO05D004049 4.1e-36 155.2 118 63.6
Lj4C706T9 Lonicera japonica HOM05D003607 ORTHO05D004049 5.3e-36 154.8 118 62.7
PSO541G0274 Papaver somniferum HOM05D003607 ORTHO05D004049 5.3e-36 154.8 118 62.7
PSO675G0532 Papaver somniferum HOM05D003607 ORTHO05D004049 5.3e-36 154.8 118 62.7
PSO761G0544 Papaver somniferum HOM05D003607 ORTHO05D004049 5.3e-36 154.8 118 62.7
PSO210G3326 Papaver somniferum HOM05D003607 ORTHO05D004049 9.1e-36 154.1 118 62.7
CSS0022022 Camellia sinensis var. sinensis HOM05D003607 ORTHO05D004049 1.2e-35 153.7 118 62.7
TAR623G0614 Trochodendron aralioides HOM05D003607 ORTHO05D004049 1.2e-35 153.7 118 64.4
BcaC02g07616 Brassica carinata HOM05D003607 ORTHO05D004049 1.6e-35 153.3 119 67.2
BolC4t28008H Brassica oleracea HOM05D003607 ORTHO05D004049 1.6e-35 153.3 119 67.2
DCAR_032379 Daucus carota HOM05D003607 ORTHO05D004049 1.6e-35 153.3 118 62.7
MSTRG.9085 Avicennia marina HOM05D003607 ORTHO05D004049 2.0e-35 152.9 118 61.0
Gohir.D01G128200 Gossypium hirsutum HOM05D003607 ORTHO05D004049 2.6e-35 152.5 120 67.5
Gorai.002G158800 Gossypium raimondii HOM05D003607 ORTHO05D004049 2.6e-35 152.5 120 67.5
Phvul.001G189100 Phaseolus vulgaris HOM05D003607 ORTHO05D004049 2.6e-35 152.5 118 66.1
Cc02_g09790 Coffea canephora HOM05D003607 ORTHO05D004049 3.5e-35 152.1 118 62.7
Oeu025590.1 Olea europaea HOM05D003607 ORTHO05D004049 3.5e-35 152.1 118 61.9
vmacro10304 Vaccinium macrocarpon HOM05D003607 ORTHO05D004049 5.9e-35 151.4 118 61.0
Gohir.A01G138500 Gossypium hirsutum HOM05D003607 ORTHO05D004049 7.7e-35 151.0 120 67.5
Rhsim07G0211000 Rhododendron simsii HOM05D003607 ORTHO05D004049 7.7e-35 151.0 118 60.2
Rhsim09G0142700 Rhododendron simsii HOM05D003607 ORTHO05D004049 7.7e-35 151.0 118 60.2
SGA_v2.0_scaffold62G21343 Striga asiatica HOM05D003607 ORTHO05D004049 1.0e-34 150.6 118 59.3
Migut.F00909 Erythranthe guttata HOM05D003607 ORTHO05D004049 1.3e-34 150.2 118 57.6
SalBow6G2765 Salvia bowleyana HOM05D003607 ORTHO05D004049 1.3e-34 150.2 118 60.2
Cpa.g.sc183.9 Carica papaya HOM05D003607 ORTHO05D004049 2.2e-34 149.4 117 63.2
MSTRG.27534 Avicennia marina HOM05D003607 ORTHO05D004049 2.9e-34 149.1 118 57.6
TWI63G0764 Tripterygium wilfordii HOM05D003607 ORTHO05D004049 5.0e-34 148.3 118 61.9
Nitab4.5_0001027g0170 Nicotiana tabacum HOM05D003607 ORTHO05D004049 1.5e-33 146.7 118 62.7
SGA_v2.0_scaffold13G06486 Striga asiatica HOM05D001901 ORTHO05D004049 1.9e-33 146.4 118 58.5
Peaxi162Scf00173g00511 Petunia axillaris HOM05D003607 ORTHO05D004049 3.2e-33 145.6 120 60.0
GSVIVG01033828001 Vitis vinifera HOM05D003607 ORTHO05D004049 3.2e-33 145.6 118 62.7
Lalb_Chr01g0010411 Lupinus albus HOM05D003607 ORTHO05D004049 4.2e-33 145.2 118 61.9
Solyc11g007080.1 Solanum lycopersicum HOM05D003607 ORTHO05D004049 4.2e-33 145.2 120 60.8
Migut.F01614 Erythranthe guttata HOM05D003607 ORTHO05D004049 5.5e-33 144.8 117 58.1
Sopen11g003000 Solanum pennellii HOM05D003607 ORTHO05D004049 7.2e-33 144.4 118 61.0
PGSC0003DMG400019486 Solanum tuberosum HOM05D003607 ORTHO05D004049 7.2e-33 144.4 118 61.0
Dinv11849 Davidia involucrata HOM05D003607 ORTHO05D004049 9.4e-33 144.1 108 63.9
Nitab4.5_0002662g0040 Nicotiana tabacum HOM05D003607 ORTHO05D004049 9.4e-33 144.1 118 61.0
CAN.G1513.4 Capsicum annuum HOM05D003607 ORTHO05D004049 1.2e-32 143.7 118 60.2
Nitab4.5_0012135g0010 Nicotiana tabacum HOM05D003607 ORTHO05D004049 1.2e-32 143.7 118 60.2
Solyc05g055300.1 Solanum lycopersicum HOM05D003607 ORTHO05D004049 1.2e-32 143.7 118 60.2
Sopen05g033740 Solanum pennellii HOM05D003607 ORTHO05D004049 1.2e-32 143.7 118 60.2
PGSC0003DMG400023389 Solanum tuberosum HOM05D003607 ORTHO05D004049 1.2e-32 143.7 118 60.2
PSO339G5446 Papaver somniferum HOM05D003607 ORTHO05D004049 1.6e-32 143.3 118 57.6
HPP92_012048 Vanilla planifolia HOM05D003607 ORTHO05D004049 2.1e-32 142.9 118 57.6
unitig_748.g8775 Utricularia gibba HOM05D003607 ORTHO05D004049 2.7e-32 142.5 118 58.5
ATR0605G137 Amborella trichopoda HOM05D003607 ORTHO05D004049 3.6e-32 142.1 118 58.5
Oeu036839.1 Olea europaea HOM05D003607 ORTHO05D004049 8.0e-32 141.0 117 57.3
Oeu036840.1 Olea europaea HOM05D003607 ORTHO05D004049 8.0e-32 141.0 117 57.3
SEGI_31078 Sequoiadendron giganteum HOM05D003607 ORTHO05D004049 1.4e-31 140.2 118 56.8
PSO384G4166 Papaver somniferum HOM05D003607 ORTHO05D004049 1.8e-31 139.8 118 56.8
Os03g0289200 Oryza sativa ssp. japonica HOM05D003607 ORTHO05D004049 2.3e-31 139.4 119 58.8
Zm00001eb013300 Zea mays HOM05D003607 ORTHO05D004049 8.8e-31 137.5 119 56.3
AUR62044160 Chenopodium quinoa HOM05D003607 ORTHO05D004049 1.2e-30 137.1 119 59.7
CSS0022860 Camellia sinensis var. sinensis HOM05D003607 ORTHO05D004049 1.5e-30 136.7 119 58.8
Zm00001eb397070 Zea mays HOM05D003607 ORTHO05D004049 1.5e-30 136.7 119 56.3
Psat5g022640 Pisum sativum HOM05D003607 ORTHO05D004049 2.0e-30 136.3 118 59.3
EL10Ac6g14511 Beta vulgaris HOM05D003607 ORTHO05D004049 1.3e-29 133.7 119 58.8
Sc02g0000900 Simmondsia chinensis HOM05D003607 ORTHO05D004049 2.8e-29 132.5 121 52.9
Mapoly0150s0018 Marchantia polymorpha HOM05D003607 ORTHO05D004049 3.1e-28 129.0 118 54.2
Thecc.05G087200 Theobroma cacao HOM05D003607 ORTHO05D004049 3.5e-27 125.6 83 75.9
AagrBONN_evm.TU.Sc2ySwM_228.2374 Anthoceros agrestis HOM05D003607 ORTHO05D004049 1.5e-25 120.2 127 50.4
Pp3c18_15780 Physcomitrium patens HOM05D003607 ORTHO05D004049 1.5e-25 120.2 118 50.0
Pp3c18_15783 Physcomitrium patens HOM05D003607 ORTHO05D004049 1.5e-25 120.2 118 50.0
Pp3c11_15860 Physcomitrium patens HOM05D003607 ORTHO05D004049 3.6e-24 115.5 127 46.5
CDE06G0188 Ceratophyllum demersum HOM05D003607 ORTHO05D004049 4.0e-23 112.1 80 66.2
CBR_g2958 Chara braunii HOM05D003607 ORTHO05D004049 8.8e-23 110.9 118 47.5
SMO351G0616 Selaginella moellendorffii HOM05D003607 ORTHO05D004049 1.5e-22 110.2 118 48.3
CBR_g10857 Chara braunii HOM05D003607 ORTHO05D004049 2.0e-19 99.8 128 43.0
A04p27800 Brassica napus HOM05D003607 ORTHO05D004049 7.7e-19 97.8 92 60.9
BraA04t18272Z Brassica rapa HOM05D003607 ORTHO05D004049 7.7e-19 97.8 92 60.9
C04p65300 Brassica napus HOM05D003607 ORTHO05D004049 2.8e-16 89.4 83 60.2
CiPaw.13G038900 Carya illinoinensis HOM05D003607 ORTHO05D004049 4.7e-16 88.6 79 57.0
Pp3c21_5540 Physcomitrium patens HOM05D003607 ORTHO05D004049 8.0e-16 87.8 80 48.8
AUR62002927 Chenopodium quinoa HOM05D003607 ORTHO05D004049 3.0e-15 85.9 81 54.3
AUR62007735 Chenopodium quinoa HOM05D003607 ORTHO05D004049 3.0e-15 85.9 81 54.3
Lj3P931T18 Lonicera japonica HOM05D003607 ORTHO05D004049 2.8e-13 79.3 61 59.0
Nitab4.5_0001437g0160 Nicotiana tabacum HOM05D003607 ORTHO05D004049 2.8e-13 79.3 55 65.5
Actinidia34719 Actinidia chinensis HOM05D003607 ORTHO05D004049 3.7e-13 79.0 118 41.5
CDE11G0953 Ceratophyllum demersum HOM05D003607 ORTHO05D004049 6.3e-13 78.2 73 53.4
Actinidia31103 Actinidia chinensis HOM05D003607 ORTHO05D004049 1.4e-12 77.0 118 41.5
EL10Ac3g06213 Beta vulgaris HOM05D003607 ORTHO05D004049 1.8e-12 76.6 54 63.0
Lalb_Chr25g0288381 Lupinus albus HOM05D003607 ORTHO05D004049 5.4e-12 75.1 118 39.8
BNapus_Darmor_BZH_scaffold_239p00020 Brassica napus HOM05D003607 ORTHO05D004049 3.5e-11 72.4 73 58.9
MCO11G705 Micromonas commoda HOM05D003607 ORTHO05D004049 2.3e-10 69.7 117 34.2
PRCOL_00002835 Prasinoderma coloniale HOM05D003607 ORTHO05D004049 2.3e-10 69.7 118 33.9
FAN01G1204 Fragaria x ananassa HOM05D003607 ORTHO05D004049 8.6e-10 67.8 48 72.9
Cre09.g402650 Chlamydomonas reinhardtii HOM05D003607 ORTHO05D004049 2.5e-09 66.2 99 42.4


User provided reference genes

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