Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0710 Fragaria x ananassa HOM05D005738 ORTHO05D007135 4.0e-34 147.5 74 100.0
FAN08G3274 Fragaria x ananassa HOM05D005738 ORTHO05D007135 1.5e-28 129.0 76 85.5
FvH4_5g23030 Fragaria vesca HOM05D005738 ORTHO05D007135 1.1e-26 122.9 107 65.4
FAN18G1300 Fragaria x ananassa HOM05D005738 ORTHO05D007135 2.2e-24 115.2 102 63.7
FAN17G0023 Fragaria x ananassa HOM05D005738 ORTHO05D007135 4.9e-24 114.0 107 59.8
FAN22G1556 Fragaria x ananassa HOM05D005738 ORTHO05D007135 4.9e-24 114.0 107 59.8
FAN18G3749 Fragaria x ananassa HOM05D005738 ORTHO05D007135 6.4e-24 113.6 102 62.7
FAN07G1335 Fragaria x ananassa HOM05D005738 ORTHO05D007135 2.4e-23 111.7 107 58.9
RcHm_v2.0_Chr6g0288631 Rosa chinensis HOM05D005738 ORTHO05D007135 4.2e-23 110.9 107 58.9
RcHm_v2.0_Chr4g0439701 Rosa chinensis HOM05D005738 ORTHO05D007135 1.2e-22 109.4 107 57.9
FAN13G2547 Fragaria x ananassa HOM05D005738 ORTHO05D007135 2.7e-22 108.2 102 60.8
FvH4_4g31280 Fragaria vesca HOM05D005738 ORTHO05D007135 3.5e-22 107.8 107 57.0
FAN24G2090 Fragaria x ananassa HOM05D005738 ORTHO05D007135 3.0e-21 104.8 107 55.1
FAN22G1611 Fragaria x ananassa HOM05D005738 ORTHO05D007135 6.6e-21 103.6 107 56.1
Dinv34149 Davidia involucrata HOM05D005738 ORTHO05D007135 8.7e-21 103.2 79 64.6
FvH4_7g03450 Fragaria vesca HOM05D005738 ORTHO05D007135 1.1e-20 102.8 107 54.2
MD16G1072000 Malus domestica HOM05D005738 ORTHO05D007135 7.3e-20 100.1 107 52.3
FAN07G1573 Fragaria x ananassa HOM05D005738 ORTHO05D007135 4.8e-19 97.4 104 53.8
Cfa008972 Carpinus fangiana HOM05D005738 ORTHO05D007135 1.8e-18 95.5 107 51.4
FvH4_6g19250 Fragaria vesca HOM05D005738 ORTHO05D007135 3.1e-18 94.7 67 70.1
QL03p068731 Quercus lobata HOM05D005738 ORTHO05D007135 4.0e-18 94.4 106 49.1
Haze_12004 Corylus avellana HOM05D005738 ORTHO05D007135 5.3e-18 94.0 107 50.5
CiPaw.05G134200 Carya illinoinensis HOM05D005738 ORTHO05D007135 9.0e-18 93.2 107 51.4
COL.COLO4_22957 Corchorus olitorius HOM05D005738 ORTHO05D007135 1.5e-17 92.4 107 48.6
Nitab4.5_0003950g0020 Nicotiana tabacum HOM05D005738 ORTHO05D007135 2.0e-17 92.0 106 50.0
TPR.G39224 Trifolium pratense HOM05D005738 ORTHO05D007135 2.0e-17 92.0 107 48.6
Ca_04813_v3 Cicer arietinum L. HOM05D005738 ORTHO05D007135 2.6e-17 91.7 107 48.6
Medtr5g041290 Medicago truncatula HOM05D005738 ORTHO05D007135 2.6e-17 91.7 107 48.6
Duzib251G0762 Durio zibethinus HOM05D005738 ORTHO05D007135 3.4e-17 91.3 107 47.7
Lalb_Chr10g0098351 Lupinus albus HOM05D005738 ORTHO05D007135 3.4e-17 91.3 106 49.1
Psat2g119200 Pisum sativum HOM05D005738 ORTHO05D007135 3.4e-17 91.3 107 48.6
arahy.Tifrunner.gnm1.ann1.C6ZMY5 Arachis hypogaea HOM05D005738 ORTHO05D007135 4.5e-17 90.9 103 48.5
arahy.Tifrunner.gnm1.ann1.L6MMNY Arachis hypogaea HOM05D005738 ORTHO05D007135 4.5e-17 90.9 103 48.5
arahy.Tifrunner.gnm1.ann1.YAXL0T Arachis hypogaea HOM05D005738 ORTHO05D007135 4.5e-17 90.9 103 48.5
Oeu055111.1 Olea europaea HOM05D005738 ORTHO05D007135 4.5e-17 90.9 107 47.7
CsaV3_5G032760 Cucumis sativus L. HOM05D005738 ORTHO05D007135 5.8e-17 90.5 104 49.0
Lj2g0006642 Lotus japonicus HOM05D005738 ORTHO05D007135 5.8e-17 90.5 107 47.7
SGA_v2.0_scaffold31G12777 Striga asiatica HOM05D005738 ORTHO05D007135 5.8e-17 90.5 107 47.7
PSO339G5942 Papaver somniferum HOM05D005738 ORTHO05D007135 9.9e-17 89.7 106 48.1
Sed0019595 Sechium edule HOM05D005738 ORTHO05D007135 9.9e-17 89.7 107 47.7
arahy.Tifrunner.gnm1.ann1.M1YF1C Arachis hypogaea HOM05D005738 ORTHO05D007135 1.3e-16 89.4 103 47.6
CAN.G1604.4 Capsicum annuum HOM05D005738 ORTHO05D007135 1.7e-16 89.0 107 48.6
Cpa.g.sc128.36 Carica papaya HOM05D005738 ORTHO05D007135 1.7e-16 89.0 107 45.8
Nitab4.5_0000040g0260 Nicotiana tabacum HOM05D000556 ORTHO05D007135 1.7e-16 89.0 106 49.1
arahy.Tifrunner.gnm1.ann1.NUP0F7 Arachis hypogaea HOM05D005738 ORTHO05D007135 2.2e-16 88.6 103 46.6
Gorai.008G180500 Gossypium raimondii HOM05D005738 ORTHO05D007135 2.2e-16 88.6 104 48.1
Cc01_g00500 Coffea canephora HOM05D005738 ORTHO05D007135 2.9e-16 88.2 107 45.8
Solyc05g007910.3 Solanum lycopersicum HOM05D005738 ORTHO05D007135 2.9e-16 88.2 107 47.7
Hund25229 Selenicereus undatus HOM05D005738 ORTHO05D007135 3.8e-16 87.8 107 47.7
PGSC0003DMG400018425 Solanum tuberosum HOM05D005738 ORTHO05D007135 3.8e-16 87.8 107 46.7
CANSAT64G2506 Cannabis sativa HOM05D005738 ORTHO05D007135 4.9e-16 87.4 107 49.5
Gohir.A12G164500 Gossypium hirsutum HOM05D005738 ORTHO05D007135 4.9e-16 87.4 104 47.1
Nitab4.5_0001555g0030 Nicotiana tabacum HOM05D005738 ORTHO05D007135 4.9e-16 87.4 107 48.6
Lsat_1_v5_gn_4_145980 Lactuca sativa HOM05D005738 ORTHO05D007135 8.4e-16 86.7 107 45.8
TWI31G0211 Tripterygium wilfordii HOM05D005738 ORTHO05D007135 8.4e-16 86.7 107 44.9
HPP92_003354 Vanilla planifolia HOM05D005738 ORTHO05D007135 8.4e-16 86.7 70 58.6
HPP92_003355 Vanilla planifolia HOM05D005738 ORTHO05D007399 8.4e-16 86.7 70 58.6
CSS0032710 Camellia sinensis var. sinensis HOM05D005738 ORTHO05D007135 1.1e-15 86.3 104 45.2
ClCG05G024220 Citrullus lanatus HOM05D005738 ORTHO05D007135 1.4e-15 85.9 103 45.6
Sopen05g003760 Solanum pennellii HOM05D005738 ORTHO05D007135 1.4e-15 85.9 107 46.7
BcaB08g34377 Brassica carinata HOM05D005738 ORTHO05D007135 1.9e-15 85.5 106 47.2
Migut.L01281 Erythranthe guttata HOM05D005738 ORTHO05D007135 1.9e-15 85.5 105 47.6
VMungo1215G0821 Vigna mungo HOM05D005738 ORTHO05D007135 1.9e-15 85.5 107 46.7
MSTRG.706 Avicennia marina HOM05D005738 ORTHO05D007135 2.4e-15 85.1 107 44.9
EL10Ac2g03567 Beta vulgaris HOM05D005738 ORTHO05D007135 2.4e-15 85.1 107 44.9
CARHR014620 Cardamine hirsuta HOM05D005738 ORTHO05D007135 2.4e-15 85.1 103 47.6
AUR62005804 Chenopodium quinoa HOM05D005738 ORTHO05D007135 2.4e-15 85.1 107 45.8
Cc00_g25960 Coffea canephora HOM05D005738 ORTHO05D007135 2.4e-15 85.1 107 45.8
MELO3C012102.2 Cucumis melo HOM05D005738 ORTHO05D007135 2.4e-15 85.1 66 66.7
Thhalv10008948m.g Eutrema salsugineum HOM05D005738 ORTHO05D007135 2.4e-15 85.1 103 47.6
Gohir.D12G167600 Gossypium hirsutum HOM05D005738 ORTHO05D007135 2.4e-15 85.1 104 47.1
MBI05_g34363_MAGBIO Magnolia biondii HOM05D005738 ORTHO05D007135 2.4e-15 85.1 107 44.9
Os03g0169400 Oryza sativa ssp. japonica HOM05D005738 ORTHO05D007135 2.4e-15 85.1 107 43.9
Phvul.003G017400 Phaseolus vulgaris HOM05D005738 ORTHO05D007135 2.4e-15 85.1 108 47.2
PGR102G3221 Punica granatum HOM05D005738 ORTHO05D007135 2.4e-15 85.1 70 61.4
Sp1g12550 Schrenkiella parvula HOM05D005738 ORTHO05D007135 2.4e-15 85.1 103 47.6
Thecc.02G344900 Theobroma cacao HOM05D005738 ORTHO05D007135 2.4e-15 85.1 107 45.8
BcaC07g41589 Brassica carinata HOM05D005738 ORTHO05D007135 3.2e-15 84.7 103 47.6
A09p62360 Brassica napus HOM05D005738 ORTHO05D007135 3.2e-15 84.7 103 47.6
BraA09t41601Z Brassica rapa HOM05D005738 ORTHO05D007135 3.2e-15 84.7 103 47.6
FAN14G0628 Fragaria x ananassa HOM05D005738 ORTHO05D007135 3.2e-15 84.7 76 61.8
Lj3A1037T78 Lonicera japonica HOM05D005738 ORTHO05D007135 3.2e-15 84.7 70 60.0
Actinidia31900 Actinidia chinensis HOM05D005738 ORTHO05D007135 4.2e-15 84.3 107 43.9
C08p45920 Brassica napus HOM05D005738 ORTHO05D007135 4.2e-15 84.3 103 46.6
BolC8t52144H Brassica oleracea HOM05D005738 ORTHO05D007135 4.2e-15 84.3 103 46.6
AUR62032794 Chenopodium quinoa HOM05D005738 ORTHO05D007135 4.2e-15 84.3 107 45.8
DCAR_007157 Daucus carota HOM05D005738 ORTHO05D007135 4.2e-15 84.3 107 44.9
THA.LOC104801796 Tarenaya hassleriana HOM05D005738 ORTHO05D007135 4.2e-15 84.3 104 46.2
ECA232G4216 Erigeron canadensis HOM05D005738 ORTHO05D007135 5.4e-15 84.0 107 43.9
HanXRQChr09g0256931 Helianthus annuus HOM05D005738 ORTHO05D007135 5.4e-15 84.0 107 43.9
unitig_22.g6513 Utricularia gibba HOM05D005738 ORTHO05D007135 5.4e-15 84.0 107 44.9
Sc14g0008110 Simmondsia chinensis HOM05D005738 ORTHO05D007135 7.1e-15 83.6 107 44.9
SGA_v2.0_scaffold47G17610 Striga asiatica HOM05D005738 ORTHO05D007135 7.1e-15 83.6 70 60.0
Cc00_g24810 Coffea canephora HOM05D005738 ORTHO05D007135 1.2e-14 82.8 107 44.9
Hma1.2p1_0795F.1_g218920 Hydrangea macrophylla HOM05D005738 ORTHO05D007135 1.2e-14 82.8 107 43.9
Carub.0001s1389 Capsella rubella HOM05D005738 ORTHO05D007135 1.6e-14 82.4 103 46.6
SalBow2G2920 Salvia bowleyana HOM05D005738 ORTHO05D007135 1.6e-14 82.4 106 46.2
Cc01_g02300 Coffea canephora HOM05D005738 ORTHO05D007135 2.1e-14 82.0 70 60.0
Nn4g23184 Nelumbo nucifera HOM05D005738 ORTHO05D007135 2.7e-14 81.6 70 61.4
AL1G26090 Arabidopsis lyrata HOM05D005738 ORTHO05D007135 3.5e-14 81.3 103 44.7
Cc00_g33910 Coffea canephora HOM05D005738 ORTHO05D007135 3.5e-14 81.3 70 57.1
AT1G14205 Arabidopsis thaliana HOM05D005738 ORTHO05D007135 4.6e-14 80.9 103 45.6
GSVIVG01023016001 Vitis vinifera HOM05D005738 ORTHO05D007135 4.6e-14 80.9 107 45.8
Eucgr.B03215 Eucalyptus grandis HOM05D005738 ORTHO05D007135 6.0e-14 80.5 103 45.6
Ciclev10032918m.g Citrus clementina HOM05D005738 ORTHO05D007135 1.0e-13 79.7 108 44.4
Aqoxy3G03402 Aquilegia oxysepala HOM05D005738 ORTHO05D007135 1.8e-13 79.0 104 42.3
Os09g0439050 Oryza sativa ssp. japonica HOM05D005738 ORTHO05D007135 1.8e-13 79.0 70 52.9
Peaxi162Scf00222g00523 Petunia axillaris HOM05D005738 ORTHO05D007135 3.0e-13 78.2 85 51.8
Potri.008G087100 Populus trichocarpa HOM05D005738 ORTHO05D007135 3.0e-13 78.2 70 60.0
Atru.chr11.1777 Acer truncatum HOM05D005738 ORTHO05D007135 3.9e-13 77.8 105 40.0
Glyma.02G108200 Glycine max HOM05D005738 ORTHO05D007135 3.9e-13 77.8 108 45.4
Rhsim12G0064100 Rhododendron simsii HOM05D005738 ORTHO05D007135 5.1e-13 77.4 104 42.3
Cc00_g35260 Coffea canephora HOM05D005738 ORTHO05D007135 6.7e-13 77.0 70 55.7
FAN17G2055 Fragaria x ananassa HOM05D005738 ORTHO05D007135 6.7e-13 77.0 84 52.4
CDE04G3278 Ceratophyllum demersum HOM05D005738 ORTHO05D007135 1.9e-12 75.5 104 42.3
ATR0681G265 Amborella trichopoda HOM05D005738 ORTHO05D007135 5.6e-12 73.9 67 53.7
Sabra08G0064900 Salix brachista HOM05D005738 ORTHO05D007135 9.6e-12 73.2 52 69.2
Aa31LG1G840 Aethionema arabicum HOM05D005738 ORTHO05D007135 1.6e-11 72.4 72 55.6
vmacro01263 Vaccinium macrocarpon HOM05D005738 ORTHO05D007135 5.3e-10 67.4 55 60.0
Zm00001eb005360 Zea mays HOM05D005738 ORTHO05D007135 6.9e-10 67.0 70 45.7
Zm00001eb402360 Zea mays HOM05D005738 ORTHO05D007135 1.9e-07 58.9 97 40.2
SEGI_26874 Sequoiadendron giganteum HOM05D005738 ORTHO05D007135 1.6e-06 55.8 104 33.7
Cc00_g33980 Coffea canephora HOM05D005738 ORTHO05D007135 6.0e-06 53.9 70 45.7


User provided reference genes

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