Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0582 Fragaria x ananassa HOM05D003695 ORTHO05D004788 1.1e-36 156.0 75 100.0
FvH4_2g16530 Fragaria vesca HOM05D003695 ORTHO05D004788 4.8e-35 150.6 74 95.9
FAN15G0675 Fragaria x ananassa HOM05D003695 ORTHO05D004788 4.8e-35 150.6 74 95.9
FAN24G2440 Fragaria x ananassa HOM05D003695 ORTHO05D004788 4.8e-35 150.6 74 95.9
RcHm_v2.0_Chr7g0225341 Rosa chinensis HOM05D003695 ORTHO05D004788 4.8e-35 150.6 74 97.3
FAN27G2019 Fragaria x ananassa HOM05D003695 ORTHO05D004788 2.4e-34 148.3 74 94.6
FAN08G1272 Fragaria x ananassa HOM05D003695 ORTHO05D004788 3.1e-34 147.9 74 95.9
Cfa005327 Carpinus fangiana HOM05D003695 ORTHO05D004788 6.9e-34 146.7 74 93.2
Haze_02053 Corylus avellana HOM05D003695 ORTHO05D004788 6.9e-34 146.7 74 93.2
MD10G1138700 Malus domestica HOM05D003695 ORTHO05D004788 6.9e-34 146.7 74 90.5
MD05G1133700 Malus domestica HOM05D003695 ORTHO05D004788 9.1e-34 146.4 74 90.5
Prupe.8G177500 Prunus persica HOM05D003695 ORTHO05D004788 9.1e-34 146.4 74 91.9
Eucgr.G01854 Eucalyptus grandis HOM05D003695 ORTHO05D004788 1.2e-33 146.0 74 93.2
PGR142G4002 Punica granatum HOM05D003695 ORTHO05D004788 1.5e-33 145.6 74 93.2
MELO3C022592.2 Cucumis melo HOM05D003695 ORTHO05D004788 2.0e-33 145.2 74 91.9
CsaV3_5G012530 Cucumis sativus L. HOM05D003695 ORTHO05D004788 2.0e-33 145.2 74 91.9
Atru.chr9.531 Acer truncatum HOM05D003695 ORTHO05D004788 2.6e-33 144.8 74 90.5
Sc18g0005940 Simmondsia chinensis HOM05D003695 ORTHO05D004788 3.4e-33 144.4 74 89.2
arahy.Tifrunner.gnm1.ann1.50NG3N Arachis hypogaea HOM05D003695 ORTHO05D004788 4.5e-33 144.1 74 90.5
arahy.Tifrunner.gnm1.ann1.I3VYS4 Arachis hypogaea HOM05D003695 ORTHO05D004788 4.5e-33 144.1 74 90.5
CiPaw.06G118100 Carya illinoinensis HOM05D003695 ORTHO05D004788 4.5e-33 144.1 74 89.2
Atru.chr9.527 Acer truncatum HOM05D003695 ORTHO05D004788 7.7e-33 143.3 74 87.8
Glyma.08G077800 Glycine max HOM05D003695 ORTHO05D004788 7.7e-33 143.3 74 89.2
arahy.Tifrunner.gnm1.ann1.Q95X63 Arachis hypogaea HOM05D003695 ORTHO05D004788 1.0e-32 142.9 74 89.2
TAR381G0785 Trochodendron aralioides HOM05D003695 ORTHO05D004788 1.0e-32 142.9 74 89.2
CiPaw.05G088700 Carya illinoinensis HOM05D003695 ORTHO05D004788 1.3e-32 142.5 74 90.5
AUR62012932 Chenopodium quinoa HOM05D003695 ORTHO05D004788 1.3e-32 142.5 74 87.8
AUR62027130 Chenopodium quinoa HOM05D003695 ORTHO05D004788 1.3e-32 142.5 74 87.8
Manes.02G063200 Manihot esculenta HOM05D003695 ORTHO05D004788 1.3e-32 142.5 74 89.2
Manes.02G064001 Manihot esculenta HOM05D003695 ORTHO05D004788 1.3e-32 142.5 74 89.2
Sed0014704 Sechium edule HOM05D003695 ORTHO05D004788 1.3e-32 142.5 74 89.2
CANSAT25G1589 Cannabis sativa HOM05D003695 ORTHO05D004788 1.7e-32 142.1 74 89.2
Ciclev10028035m.g Citrus clementina HOM05D003695 ORTHO05D004788 1.7e-32 142.1 74 87.8
Glyma.05G122800 Glycine max HOM05D003695 ORTHO05D004788 1.7e-32 142.1 74 87.8
VMungo0251G1743 Vigna mungo HOM05D003695 ORTHO05D004788 1.7e-32 142.1 74 87.8
AUR62034267 Chenopodium quinoa HOM05D003695 ORTHO05D004788 2.2e-32 141.7 74 86.5
Migut.E00721 Erythranthe guttata HOM05D003695 ORTHO05D004788 2.2e-32 141.7 74 89.2
Phvul.002G202700 Phaseolus vulgaris HOM05D003695 ORTHO05D004788 2.2e-32 141.7 74 86.5
TWI31G0731 Tripterygium wilfordii HOM05D003695 ORTHO05D004788 2.2e-32 141.7 74 89.2
ClCG02G010010 Citrullus lanatus HOM05D003695 ORTHO05D004788 2.9e-32 141.4 74 89.2
Lalb_Chr07g0189201 Lupinus albus HOM05D003695 ORTHO05D004788 2.9e-32 141.4 74 86.5
Potri.004G204400 Populus trichocarpa HOM05D003695 ORTHO05D004788 2.9e-32 141.4 74 87.8
Aa31LG8G15160 Aethionema arabicum HOM05D003695 ORTHO05D004788 3.8e-32 141.0 74 86.5
AL3G51020 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 3.8e-32 141.0 74 86.5
Carub.0003s3212 Capsella rubella HOM05D003695 ORTHO05D004788 3.8e-32 141.0 74 86.5
CARHR108470 Cardamine hirsuta HOM05D003695 ORTHO05D004788 3.8e-32 141.0 74 86.5
Ca_18316_v3 Cicer arietinum L. HOM05D003695 ORTHO05D004788 3.8e-32 141.0 74 86.5
Thhalv10022599m.g Eutrema salsugineum HOM05D003695 ORTHO05D004788 3.8e-32 141.0 74 86.5
Lj4g0019363 Lotus japonicus HOM05D003695 ORTHO05D004788 3.8e-32 141.0 74 86.5
TAR625G0891 Trochodendron aralioides HOM05D003695 ORTHO05D004788 3.8e-32 141.0 74 89.2
EL10Ac9g21259 Beta vulgaris HOM05D003695 ORTHO05D004788 5.0e-32 140.6 74 86.5
THA.LOC104807186 Tarenaya hassleriana HOM05D003695 ORTHO05D004788 5.0e-32 140.6 74 87.8
C03p58880 Brassica napus HOM05D003695 ORTHO05D004788 6.5e-32 140.2 74 85.1
Sabra04G0138000 Salix brachista HOM05D003695 ORTHO05D004788 6.5e-32 140.2 74 86.5
THA.LOC104819511 Tarenaya hassleriana HOM05D003695 ORTHO05D004788 6.5e-32 140.2 73 87.7
Actinidia20564 Actinidia chinensis HOM05D003695 ORTHO05D004788 8.5e-32 139.8 74 87.8
CAN.G1235.1 Capsicum annuum HOM05D003695 ORTHO05D004788 8.5e-32 139.8 74 87.8
Nitab4.5_0000783g0140 Nicotiana tabacum HOM05D003695 ORTHO05D004788 8.5e-32 139.8 74 87.8
Nitab4.5_0011212g0010 Nicotiana tabacum HOM05D003695 ORTHO05D004788 8.5e-32 139.8 74 87.8
Peaxi162Scf00362g00220 Petunia axillaris HOM05D003695 ORTHO05D004788 8.5e-32 139.8 74 87.8
Psat7g095320 Pisum sativum HOM05D003695 ORTHO05D004788 8.5e-32 139.8 74 85.1
Cc09_g10660 Coffea canephora HOM05D003695 ORTHO05D004788 1.1e-31 139.4 74 85.1
Medtr4g094405 Medicago truncatula HOM05D003695 ORTHO05D004788 1.1e-31 139.4 74 85.1
Oeu021964.1 Olea europaea HOM05D003695 ORTHO05D004788 1.1e-31 139.4 74 86.5
QL11p053951 Quercus lobata HOM05D003695 ORTHO05D004788 1.1e-31 139.4 74 86.5
Dinv41883 Davidia involucrata HOM05D003695 ORTHO05D004788 1.4e-31 139.0 74 86.5
SalBow1G1498 Salvia bowleyana HOM05D003695 ORTHO05D004788 1.4e-31 139.0 73 89.0
BcaB08g34780 Brassica carinata HOM05D003695 ORTHO05D004788 1.9e-31 138.7 74 83.8
Hund28543 Selenicereus undatus HOM05D003695 ORTHO05D004788 1.9e-31 138.7 74 85.1
Hund28545 Selenicereus undatus HOM05D003695 ORTHO05D004788 1.9e-31 138.7 74 85.1
A06p33480 Brassica napus HOM05D003695 ORTHO05D004788 2.5e-31 138.3 74 83.8
Nn6g31732 Nelumbo nucifera HOM05D003695 ORTHO05D004788 2.5e-31 138.3 74 87.8
QL02p073794 Quercus lobata HOM05D003695 ORTHO05D004788 2.5e-31 138.3 74 86.5
vmacro21804 Vaccinium macrocarpon HOM05D003695 ORTHO05D004788 2.5e-31 138.3 74 86.5
Cpa.g.sc20.199 Carica papaya HOM05D003695 ORTHO05D004788 3.2e-31 137.9 74 83.8
Lj5A173T63 Lonicera japonica HOM05D003695 ORTHO05D004788 3.2e-31 137.9 74 86.5
Rhsim11G0196800 Rhododendron simsii HOM05D003695 ORTHO05D004788 3.2e-31 137.9 74 86.5
Sp3g31410 Schrenkiella parvula HOM05D003695 ORTHO05D004788 3.2e-31 137.9 74 83.8
PGSC0003DMG400016827 Solanum tuberosum HOM05D003695 ORTHO05D004788 3.2e-31 137.9 73 86.3
GSVIVG01023951001 Vitis vinifera HOM05D003695 ORTHO05D004788 3.2e-31 137.9 74 85.1
MSTRG.5469 Avicennia marina HOM05D003695 ORTHO05D004788 4.2e-31 137.5 74 83.8
Duzib132G1261 Durio zibethinus HOM05D003695 ORTHO05D004788 4.2e-31 137.5 74 85.1
Solyc01g112150.3 Solanum lycopersicum HOM05D003695 ORTHO05D004788 4.2e-31 137.5 74 86.5
Sopen01g054200 Solanum pennellii HOM05D003695 ORTHO05D004788 4.2e-31 137.5 74 86.5
PGSC0003DMG400014674 Solanum tuberosum HOM05D003695 ORTHO05D004788 4.2e-31 137.5 74 86.5
AT2G17980 Arabidopsis thaliana HOM05D003695 ORTHO05D004788 5.5e-31 137.1 74 83.8
DCAR_006289 Daucus carota HOM05D003695 ORTHO05D004788 5.5e-31 137.1 74 86.5
Gohir.A12G033600 Gossypium hirsutum HOM05D003695 ORTHO05D004788 5.5e-31 137.1 74 83.8
Gohir.D12G038900 Gossypium hirsutum HOM05D003695 ORTHO05D004788 5.5e-31 137.1 74 83.8
Gorai.008G040800 Gossypium raimondii HOM05D003695 ORTHO05D004788 5.5e-31 137.1 74 83.8
Potri.009G165300 Populus trichocarpa HOM05D003695 ORTHO05D004788 5.5e-31 137.1 74 85.1
SGA_v2.0_scaffold32G13340 Striga asiatica HOM05D003695 ORTHO05D004788 5.5e-31 137.1 74 83.8
Actinidia18006 Actinidia chinensis HOM05D003695 ORTHO05D004788 7.2e-31 136.7 74 86.5
Ah.02g124580 Amaranthus hybridus HOM05D003695 ORTHO05D004788 7.2e-31 136.7 74 82.4
Ah.11g043800 Amaranthus hybridus HOM05D003695 ORTHO05D004788 7.2e-31 136.7 74 82.4
Dinv14161 Davidia involucrata HOM05D003695 ORTHO05D004788 7.2e-31 136.7 74 85.1
Oeu062472.1 Olea europaea HOM05D003695 ORTHO05D004788 7.2e-31 136.7 74 83.8
Oeu062473.1 Olea europaea HOM05D003695 ORTHO05D004788 7.2e-31 136.7 74 83.8
Peaxi162Scf00205g00012 Petunia axillaris HOM05D003695 ORTHO05D004788 7.2e-31 136.7 74 83.8
DCAR_015668 Daucus carota HOM05D003695 ORTHO05D004788 9.4e-31 136.3 74 86.5
Sopen10g027010 Solanum pennellii HOM05D003695 ORTHO05D004788 9.4e-31 136.3 73 87.7
Nitab4.5_0001700g0110 Nicotiana tabacum HOM05D003695 ORTHO05D004788 1.2e-30 136.0 74 85.1
ECA232G0128 Erigeron canadensis HOM05D003695 ORTHO05D004788 1.6e-30 135.6 74 85.1
Nn5g30948 Nelumbo nucifera HOM05D003695 ORTHO05D004788 1.6e-30 135.6 74 83.8
Thecc.02G045500 Theobroma cacao HOM05D003695 ORTHO05D004788 2.1e-30 135.2 74 81.1
vmacro08752 Vaccinium macrocarpon HOM05D003695 ORTHO05D004788 2.1e-30 135.2 74 85.1
Duzib052G0095 Durio zibethinus HOM05D003695 ORTHO05D004788 3.6e-30 134.4 74 81.1
Aqoxy5G01038 Aquilegia oxysepala HOM05D003695 ORTHO05D004788 4.7e-30 134.0 74 82.4
COL.COLO4_17937 Corchorus olitorius HOM05D003695 ORTHO05D004788 4.7e-30 134.0 74 81.1
Sabra09G0129300 Salix brachista HOM05D003695 ORTHO05D004788 4.7e-30 134.0 74 82.4
AL6G43520 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 7.9e-30 133.3 73 83.6
Nitab4.5_0003828g0040 Nicotiana tabacum HOM05D003695 ORTHO05D004788 7.9e-30 133.3 74 83.8
Lsat_1_v5_gn_1_280 Lactuca sativa HOM05D003695 ORTHO05D004788 1.0e-29 132.9 74 82.4
Lsat_1_v5_gn_9_39861 Lactuca sativa HOM05D003695 ORTHO05D004788 1.0e-29 132.9 74 82.4
CSS0026215 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 1.4e-29 132.5 74 82.4
CSS0032013 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 1.4e-29 132.5 74 82.4
HanXRQChr14g0459051 Helianthus annuus HOM05D003695 ORTHO05D004788 1.4e-29 132.5 74 83.8
Hma1.2p1_0271F.1_g108980 Hydrangea macrophylla HOM05D003695 ORTHO05D004788 1.4e-29 132.5 75 84.0
ClCG02G003540 Citrullus lanatus HOM05D003695 ORTHO05D004788 3.0e-29 131.3 73 82.2
MELO3C013262.2 Cucumis melo HOM05D003695 ORTHO05D004788 8.8e-29 129.8 73 80.8
CsaV3_7G001760 Cucumis sativus L. HOM05D003695 ORTHO05D004788 8.8e-29 129.8 73 80.8
Sed0023045 Sechium edule HOM05D003695 ORTHO05D004788 1.5e-28 129.0 73 82.2
MSTRG.27620 Avicennia marina HOM05D003695 ORTHO05D004788 2.0e-28 128.6 74 79.7
MBI05_g12019_MAGBIO Magnolia biondii HOM05D003695 ORTHO05D004788 7.4e-28 126.7 73 79.5
AL7G20270 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 9.7e-28 126.3 75 78.7
CSS0036850 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 9.7e-28 126.3 74 79.7
CDE07G1944 Ceratophyllum demersum HOM05D003695 ORTHO05D004788 2.8e-27 124.8 74 73.0
PSO170G1984 Papaver somniferum HOM05D003695 ORTHO05D004788 2.8e-27 124.8 74 73.0
CSS0016232 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 3.7e-27 124.4 74 77.0
Gorai.002G206000 Gossypium raimondii HOM05D003695 ORTHO05D004788 3.7e-27 124.4 74 77.0
ATR0661G017 Amborella trichopoda HOM05D003695 ORTHO05D004788 4.8e-27 124.0 74 73.0
CARHR239630 Cardamine hirsuta HOM05D003695 ORTHO05D004788 6.3e-27 123.6 75 76.0
CDE04G2739 Ceratophyllum demersum HOM05D003695 ORTHO05D004788 8.2e-27 123.2 74 71.6
unitig_62.g23821 Utricularia gibba HOM05D003695 ORTHO05D004788 1.4e-26 122.5 74 77.0
SHI55151 Sapria himalayana HOM05D003695 ORTHO05D004788 7.0e-26 120.2 74 74.3
HPP92_008376 Vanilla planifolia HOM05D003695 ORTHO05D004788 7.0e-26 120.2 74 73.0
AagrBONN_evm.TU.Sc2ySwM_117.2597 Anthoceros agrestis HOM05D003695 ORTHO05D004788 9.1e-26 119.8 73 74.0
Gohir.A01G174400 Gossypium hirsutum HOM05D003695 ORTHO05D004788 3.5e-25 117.9 69 75.4
Pp3c4_5220 Physcomitrium patens HOM05D003695 ORTHO05D004788 4.5e-25 117.5 74 70.3
SEGI_21511 Sequoiadendron giganteum HOM05D003695 ORTHO05D004788 4.5e-25 117.5 76 72.4
SMO134G0246 Selaginella moellendorffii HOM05D003695 ORTHO05D004788 2.9e-24 114.8 74 67.6
CARHR286350 Cardamine hirsuta HOM05D003695 ORTHO05D004788 6.5e-24 113.6 74 70.3
Thhalv10003843m.g Eutrema salsugineum HOM05D003695 ORTHO05D004788 8.5e-24 113.2 75 76.0
Mapoly0007s0195 Marchantia polymorpha HOM05D003695 ORTHO05D004788 1.1e-23 112.8 70 71.4
Zm00001eb027830 Zea mays HOM05D003695 ORTHO05D004788 2.5e-23 111.7 73 71.2
Os03g0620800 Oryza sativa ssp. japonica HOM05D003695 ORTHO05D004788 3.2e-23 111.3 73 71.2
CBR_g41372 Chara braunii HOM05D003695 ORTHO05D004788 2.7e-22 108.2 73 65.8
Pp3c12_11250 Physcomitrium patens HOM05D003695 ORTHO05D004788 4.7e-22 107.5 74 62.2
Zm00001eb190510 Zea mays HOM05D003695 ORTHO05D004788 4.7e-22 107.5 74 68.9
BcaB01g00720 Brassica carinata HOM05D003695 ORTHO05D004788 8.2e-19 96.7 78 64.1
Cre12.g521350 Chlamydomonas reinhardtii HOM05D003695 ORTHO05D004788 1.2e-17 92.8 73 57.5
VMungo1215G1700 Vigna mungo HOM05D003695 ORTHO05D004788 5.9e-17 90.5 55 80.0
BcaC03g17368 Brassica carinata HOM05D003695 ORTHO05D004788 2.9e-16 88.2 76 60.5
C02p53090 Brassica napus HOM05D003695 ORTHO05D004788 2.9e-16 88.2 76 60.5
BolC2t11383H Brassica oleracea HOM05D003695 ORTHO05D004788 2.9e-16 88.2 76 60.5
Gohir.D01G165600 Gossypium hirsutum HOM05D003695 ORTHO05D004788 6.5e-16 87.0 74 62.2
MCO11G234 Micromonas commoda HOM05D003695 ORTHO05D004788 6.8e-13 77.0 79 44.3
PRCOL_00000573 Prasinoderma coloniale HOM05D003695 ORTHO05D004788 8.8e-13 76.6 74 45.9
Cfa025643 Carpinus fangiana HOM05D003695 ORTHO05D004788 1.3e-08 62.8 79 40.5
A02p34590 Brassica napus HOM05D003695 ORTHO05D004788 5.0e-08 60.8 74 45.9
BraA02t08467Z Brassica rapa HOM05D003695 ORTHO05D004788 5.0e-08 60.8 74 45.9


User provided reference genes

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