Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0567 Fragaria x ananassa HOM05D006148 ORTHO05D007955 8.9e-114 413.7 219 100.0
FvH4_5g20230 Fragaria vesca HOM05D006148 ORTHO05D007955 4.2e-71 271.9 176 85.8
FAN13G2154 Fragaria x ananassa HOM05D006148 ORTHO05D007955 4.2e-71 271.9 176 85.8
FAN13G3051 Fragaria x ananassa HOM05D006148 ORTHO05D007955 4.2e-71 271.9 176 85.8
FAN08G3523 Fragaria x ananassa HOM05D006148 ORTHO05D007955 2.1e-70 269.6 187 82.4
RcHm_v2.0_Chr7g0205301 Rosa chinensis HOM05D006148 ORTHO05D007955 4.5e-65 251.9 174 78.7
Prupe.5G058400 Prunus persica HOM05D006148 ORTHO05D007955 5.3e-50 201.8 174 64.4
MD06G1048200 Malus domestica HOM05D006148 ORTHO05D007955 5.0e-48 195.3 174 60.9
MD04G1051900 Malus domestica HOM05D006148 ORTHO05D007955 9.4e-47 191.0 174 60.3
TAR375G0576 Trochodendron aralioides HOM05D006148 ORTHO05D007955 5.3e-42 175.3 168 58.9
Hma1.2p1_0840F.1_g226570 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 8.5e-40 167.9 168 57.1
Oeu040676.1 Olea europaea HOM05D006148 ORTHO05D007955 8.5e-40 167.9 170 55.3
MSTRG.9371 Avicennia marina HOM05D006148 ORTHO05D007955 1.4e-39 167.2 165 56.4
CSS0033428 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 1.4e-39 167.2 169 56.2
Migut.I00620 Erythranthe guttata HOM05D006148 ORTHO05D007955 1.4e-39 167.2 160 59.4
Manes.02G044300 Manihot esculenta HOM05D006148 ORTHO05D007955 1.4e-39 167.2 163 56.4
CANSAT21G1845 Cannabis sativa HOM05D006148 ORTHO05D007955 2.5e-39 166.4 158 59.5
Oeu017209.1 Olea europaea HOM05D006148 ORTHO05D007955 2.5e-39 166.4 170 54.7
TWI15G0129 Tripterygium wilfordii HOM05D006148 ORTHO05D007955 4.2e-39 165.6 169 55.6
Eucgr.D02128 Eucalyptus grandis HOM05D006148 ORTHO05D007955 9.4e-39 164.5 165 55.8
Aqoxy7G03487 Aquilegia oxysepala HOM05D006148 ORTHO05D007955 1.2e-38 164.1 168 54.8
Dinv21692 Davidia involucrata HOM05D006148 ORTHO05D007955 1.2e-38 164.1 170 54.1
Cc02_g08620 Coffea canephora HOM05D006148 ORTHO05D007955 2.1e-38 163.3 166 54.8
Ciclev10022620m.g Citrus clementina HOM05D006148 ORTHO05D007955 6.1e-38 161.8 153 58.2
CiPaw.12G047200 Carya illinoinensis HOM05D006148 ORTHO05D007955 1.0e-37 161.0 161 55.3
Duzib068G0643 Durio zibethinus HOM05D006148 ORTHO05D007955 1.4e-37 160.6 163 54.6
Gohir.D12G216200 Gossypium hirsutum HOM05D006148 ORTHO05D007955 1.4e-37 160.6 163 55.2
Gorai.008G231600 Gossypium raimondii HOM05D006148 ORTHO05D007955 1.4e-37 160.6 163 55.2
MBI15_g47175_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 1.8e-37 160.2 163 55.8
ClCG09G012770 Citrullus lanatus HOM05D006148 ORTHO05D007955 5.2e-37 158.7 160 56.9
Gohir.A12G213600 Gossypium hirsutum HOM05D006148 ORTHO05D007955 6.7e-37 158.3 163 54.0
Rhsim07G0118900 Rhododendron simsii HOM05D006148 ORTHO05D007955 2.0e-36 156.8 148 57.4
SGA_v2.0_scaffold377G50308 Striga asiatica HOM05D006148 ORTHO05D007955 2.6e-36 156.4 165 54.5
vmacro14126 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 2.6e-36 156.4 153 56.2
Nitab4.5_0000506g0080 Nicotiana tabacum HOM05D006148 ORTHO05D007955 3.3e-36 156.0 163 54.6
Phvul.010G018500 Phaseolus vulgaris HOM05D006148 ORTHO05D007955 3.3e-36 156.0 161 55.3
PGR031G0321 Punica granatum HOM05D006148 ORTHO05D007955 3.3e-36 156.0 166 54.8
SGA_v2.0_scaffold40G15681 Striga asiatica HOM05D006148 ORTHO05D007955 3.3e-36 156.0 166 54.2
CsaV3_3G049830 Cucumis sativus L. HOM05D006148 ORTHO05D007955 7.4e-36 154.8 176 54.5
DCAR_005581 Daucus carota HOM05D006148 ORTHO05D007955 7.4e-36 154.8 169 52.1
Thecc.03G242700 Theobroma cacao HOM05D006148 ORTHO05D007955 9.7e-36 154.5 145 59.3
MELO3C003333.2 Cucumis melo HOM05D006148 ORTHO05D007955 1.7e-35 153.7 147 59.9
Solyc06g060920.3 Solanum lycopersicum HOM05D006148 ORTHO05D007955 1.7e-35 153.7 163 52.8
VMungo0331G0425 Vigna mungo HOM05D006148 ORTHO05D007955 1.7e-35 153.7 163 56.4
Sed0014825 Sechium edule HOM05D006148 ORTHO05D007955 3.7e-35 152.5 162 53.7
Nitab4.5_0003456g0030 Nicotiana tabacum HOM05D006148 ORTHO05D007955 4.8e-35 152.1 163 54.0
PGSC0003DMG400026577 Solanum tuberosum HOM05D006148 ORTHO05D007955 6.3e-35 151.8 163 52.8
Sopen06g021070 Solanum pennellii HOM05D006148 ORTHO05D007955 8.2e-35 151.4 163 52.1
Actinidia10861 Actinidia chinensis HOM05D006148 ORTHO05D007955 1.1e-34 151.0 159 53.5
Atru.chr9.1220 Acer truncatum HOM05D006148 ORTHO05D007955 1.4e-34 150.6 164 51.8
Ca_20510_v3 Cicer arietinum L. HOM05D006148 ORTHO05D007955 1.4e-34 150.6 166 53.6
Lalb_Chr15g0078661 Lupinus albus HOM05D006148 ORTHO05D007955 3.1e-34 149.4 161 54.0
Nitab4.5_0007628g0010 Nicotiana tabacum HOM05D006148 ORTHO05D007955 3.1e-34 149.4 158 53.2
Lsat_1_v5_gn_3_16181 Lactuca sativa HOM05D006148 ORTHO05D007955 4.1e-34 149.1 165 52.7
Psat5g091640 Pisum sativum HOM05D006148 ORTHO05D007955 4.1e-34 149.1 166 53.0
PGSC0003DMG400026249 Solanum tuberosum HOM05D006148 ORTHO05D007955 5.3e-34 148.7 171 49.1
CSS0030063 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 7.0e-34 148.3 172 50.6
Lalb_Chr18g0047251 Lupinus albus HOM05D006148 ORTHO05D007955 9.1e-34 147.9 148 58.1
THA.LOC104814463 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 9.1e-34 147.9 154 52.6
unitig_46.g17987 Utricularia gibba HOM05D006148 ORTHO05D007955 9.1e-34 147.9 169 51.5
Peaxi162Scf00190g00088 Petunia axillaris HOM05D006148 ORTHO05D007955 1.2e-33 147.5 163 52.1
Sed0021147 Sechium edule HOM05D006148 ORTHO05D007955 1.2e-33 147.5 159 54.7
Haze_05448 Corylus avellana HOM05D006148 ORTHO05D007955 1.6e-33 147.1 209 45.0
Potri.012G038600 Populus trichocarpa HOM05D006148 ORTHO05D007955 2.6e-33 146.4 182 48.4
Solyc08g077970.2 Solanum lycopersicum HOM05D006148 ORTHO05D007955 2.6e-33 146.4 171 48.5
unitig_747.g21320 Utricularia gibba HOM05D006148 ORTHO05D007955 2.6e-33 146.4 148 56.1
Aa31LG2G13090 Aethionema arabicum HOM05D006148 ORTHO05D007955 3.5e-33 146.0 148 54.7
Glyma.09G078400 Glycine max HOM05D006148 ORTHO05D007955 3.5e-33 146.0 135 60.7
COL.COLO4_07508 Corchorus olitorius HOM05D006148 ORTHO05D007955 4.5e-33 145.6 163 51.5
Rhsim07G0118700 Rhododendron simsii HOM05D006148 ORTHO05D007955 4.5e-33 145.6 167 50.9
DCAR_008334 Daucus carota HOM05D006148 ORTHO05D007955 5.9e-33 145.2 159 51.6
Glyma.16G092500 Glycine max HOM05D006148 ORTHO05D007955 7.7e-33 144.8 161 52.8
Sopen08g026480 Solanum pennellii HOM05D006148 ORTHO05D007955 7.7e-33 144.8 171 48.5
TPR.G30538 Trifolium pratense HOM05D006148 ORTHO05D007955 7.7e-33 144.8 163 52.8
Medtr3g086600 Medicago truncatula HOM05D006148 ORTHO05D007955 1.0e-32 144.4 162 51.2
SalBow1G4160 Salvia bowleyana HOM05D006148 ORTHO05D007955 1.0e-32 144.4 145 55.2
Lj3A721T48 Lonicera japonica HOM05D006148 ORTHO05D007955 1.3e-32 144.1 152 54.6
THA.LOC104807925 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 1.7e-32 143.7 154 52.6
Lj2A228G47 Lonicera japonica HOM05D006148 ORTHO05D007955 2.9e-32 142.9 134 58.2
ECA248G1075 Erigeron canadensis HOM05D006148 ORTHO05D007955 3.8e-32 142.5 163 50.3
CAN.G761.17 Capsicum annuum HOM05D006148 ORTHO05D007955 5.0e-32 142.1 171 47.4
HanXRQChr17g0550021 Helianthus annuus HOM05D006148 ORTHO05D007955 5.0e-32 142.1 154 54.5
Lj3g0001636 Lotus japonicus HOM05D006148 ORTHO05D007955 8.5e-32 141.4 141 56.7
Carub.0007s2441 Capsella rubella HOM05D006148 ORTHO05D007955 1.1e-31 141.0 153 50.3
THA.LOC104812735 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 1.9e-31 140.2 175 47.4
Sc22g0005540 Simmondsia chinensis HOM05D006148 ORTHO05D007955 4.2e-31 139.0 147 54.4
CDE04G1348 Ceratophyllum demersum HOM05D006148 ORTHO05D007955 5.5e-31 138.7 168 47.6
HPP92_005702 Vanilla planifolia HOM05D006148 ORTHO05D007955 1.2e-30 137.5 141 53.9
EL10Ac5g12797 Beta vulgaris HOM05D006148 ORTHO05D007955 2.7e-30 136.3 156 52.6
A01p20300 Brassica napus HOM05D006148 ORTHO05D007955 3.6e-30 136.0 163 47.9
Sabra12G0027000 Salix brachista HOM05D006148 ORTHO05D007955 3.6e-30 136.0 160 48.8
BcaC09g50434 Brassica carinata HOM05D006148 ORTHO05D007955 4.7e-30 135.6 163 47.9
BcaNung00135 Brassica carinata HOM05D006148 ORTHO05D007955 4.7e-30 135.6 152 49.3
BraA01t01958Z Brassica rapa HOM05D006148 ORTHO05D007955 4.7e-30 135.6 163 47.9
BolC1t02497H Brassica oleracea HOM05D006148 ORTHO05D007955 8.0e-30 134.8 163 47.9
PSO541G2943 Papaver somniferum HOM05D006148 ORTHO05D007955 1.4e-29 134.0 142 50.0
C01p25460 Brassica napus HOM05D006148 ORTHO05D007955 1.8e-29 133.7 163 47.2
Sp7g17180 Schrenkiella parvula HOM05D006148 ORTHO05D007955 2.3e-29 133.3 153 48.4
Hund11457 Selenicereus undatus HOM05D006148 ORTHO05D007955 1.2e-28 131.0 152 50.0
arahy.Tifrunner.gnm1.ann1.0GR2GF Arachis hypogaea HOM05D006148 ORTHO05D007955 1.5e-28 130.6 161 47.2
arahy.Tifrunner.gnm1.ann1.L2DS42 Arachis hypogaea HOM05D006148 ORTHO05D007955 1.5e-28 130.6 161 47.2
AT4G17010 Arabidopsis thaliana HOM05D006148 ORTHO05D007955 4.8e-27 125.6 153 47.1
AUR62017180 Chenopodium quinoa HOM05D006148 ORTHO05D007955 6.3e-27 125.2 147 49.7
ATR0767G234 Amborella trichopoda HOM05D006148 ORTHO05D007955 1.1e-26 124.4 158 45.6
CARHR223570 Cardamine hirsuta HOM05D006148 ORTHO05D007955 1.4e-26 124.0 168 44.0
PSO675G9254 Papaver somniferum HOM05D006148 ORTHO05D007955 1.6e-25 120.6 142 47.2
Thhalv10026445m.g Eutrema salsugineum HOM05D006148 ORTHO05D007955 5.9e-25 118.6 153 44.4
AL7G37710 Arabidopsis lyrata HOM05D006148 ORTHO05D007955 1.0e-24 117.9 153 45.1
Os04g0431800 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 8.5e-24 114.8 173 40.5
MBI06_g25325_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 1.1e-23 114.4 105 58.1
Hma1.2p1_1008F.1_g247180 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 2.5e-23 113.2 135 51.1
Nn1g00796 Nelumbo nucifera HOM05D006148 ORTHO05D007955 2.5e-23 113.2 132 48.5
Os02g0494600 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 7.2e-23 111.7 165 43.0
QL12p009037 Quercus lobata HOM05D006148 ORTHO05D007955 2.6e-20 103.2 326 29.4
Zm00001eb422600 Zea mays HOM05D006148 ORTHO05D007955 5.7e-20 102.1 129 45.7
Lj2A721G5 Lonicera japonica HOM05D006148 ORTHO05D007955 1.1e-18 97.8 73 69.9
vmacro00048 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 1.4e-18 97.4 139 46.8
Ah.07g196390 Amaranthus hybridus HOM05D006148 ORTHO05D007955 1.6e-17 94.0 112 50.9
Cpa.g.sc1152.2 Carica papaya HOM05D006148 ORTHO05D007955 8.0e-14 81.6 76 56.6
SEGI_12345 Sequoiadendron giganteum HOM05D006148 ORTHO05D007955 8.8e-13 78.2 133 36.1
Oeu017208.1 Olea europaea HOM05D002196 ORTHO05D002565 7.5e-12 75.1 72 52.8
Nitab4.5_0000500g0150 Nicotiana tabacum HOM05D006148 ORTHO05D007955 5.4e-10 68.9 114 39.5
AUR62010708 Chenopodium quinoa HOM05D006148 ORTHO05D007955 1.6e-09 67.4 147 33.3
AUR62027260 Chenopodium quinoa HOM05D006148 ORTHO05D007955 1.6e-09 67.4 147 33.3
MBI15_g37973_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 1.7e-08 63.9 65 53.8


User provided reference genes

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