Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0496 Fragaria x ananassa HOM05D001641 ORTHO05D015676 1.3e-51 206.1 101 100.0
FAN05G2622 Fragaria x ananassa HOM05D001641 ORTHO05D015676 4.2e-50 201.1 100 98.0
FAN18G2532 Fragaria x ananassa HOM05D001641 ORTHO05D015676 5.5e-50 200.7 100 97.0
FAN11G3680 Fragaria x ananassa HOM05D001641 ORTHO05D015676 1.6e-49 199.1 100 96.0
FAN26G0827 Fragaria x ananassa HOM05D001641 ORTHO05D015676 1.6e-49 199.1 100 96.0
FAN11G2159 Fragaria x ananassa HOM05D001641 ORTHO05D015676 2.1e-49 198.7 100 96.0
FAN05G4340 Fragaria x ananassa HOM05D001641 ORTHO05D015676 2.7e-49 198.4 100 96.0
FAN14G0359 Fragaria x ananassa HOM05D001641 ORTHO05D015676 2.7e-49 198.4 100 96.0
FAN18G4158 Fragaria x ananassa HOM05D001641 ORTHO05D015676 2.7e-49 198.4 100 95.0
FAN02G2021 Fragaria x ananassa HOM05D001641 ORTHO05D015676 3.5e-49 198.0 100 95.0
FAN17G2830 Fragaria x ananassa HOM05D001641 ORTHO05D015676 5.7e-39 164.1 84 97.6
FAN26G2928 Fragaria x ananassa HOM05D001641 ORTHO05D015676 1.3e-38 162.9 84 96.4
FAN20G2072 Fragaria x ananassa HOM05D001448 ORTHO05D007650 2.5e-34 148.7 81 93.8
FvH4_6g12000 Fragaria vesca HOM05D001641 ORTHO05D001667 2.2e-30 135.6 138 56.5
FAN05G0357 Fragaria x ananassa HOM05D001641 ORTHO05D001667 2.2e-30 135.6 138 56.5
FAN14G4770 Fragaria x ananassa HOM05D001641 ORTHO05D001667 2.2e-30 135.6 138 56.5
FAN02G3953 Fragaria x ananassa HOM05D001641 ORTHO05D001667 6.3e-30 134.0 138 55.8
FAN09G4135 Fragaria x ananassa HOM05D001641 ORTHO05D001667 6.3e-30 134.0 138 55.8
FAN14G1423 Fragaria x ananassa HOM05D001641 ORTHO05D001667 3.1e-29 131.7 138 55.1
RcHm_v2.0_Chr3g0463831 Rosa chinensis HOM05D001641 ORTHO05D001667 1.8e-24 115.9 149 48.3
Thecc.05G021900 Theobroma cacao HOM05D001641 ORTHO05D001667 3.6e-17 91.7 132 45.5
PGSC0003DMG400020347 Solanum tuberosum HOM05D001641 ORTHO05D001667 1.0e-16 90.1 131 45.8
Manes.09G102200 Manihot esculenta HOM05D001641 ORTHO05D001667 5.1e-16 87.8 131 44.3
Sabra16G0107700 Salix brachista HOM05D001641 ORTHO05D001667 6.7e-16 87.4 133 45.1
Sabra06G0074200 Salix brachista HOM05D001641 ORTHO05D001667 1.5e-15 86.3 136 46.3
Solyc09g014160.3 Solanum lycopersicum HOM05D001641 ORTHO05D001667 1.5e-15 86.3 132 43.2
Sopen09g007030 Solanum pennellii HOM05D001641 ORTHO05D001667 1.5e-15 86.3 132 43.2
Ciclev10011239m.g Citrus clementina HOM05D001641 ORTHO05D001667 2.0e-15 85.9 133 44.4
COL.COLO4_14595 Corchorus olitorius HOM05D001641 ORTHO05D001667 2.0e-15 85.9 131 44.3
Duzib093G1558 Durio zibethinus HOM05D001641 ORTHO05D001667 2.0e-15 85.9 133 42.9
Potri.006G096600 Populus trichocarpa HOM05D001641 ORTHO05D001667 2.6e-15 85.5 136 45.6
Peaxi162Scf00141g00081 Petunia axillaris HOM05D001641 ORTHO05D001667 4.4e-15 84.7 137 43.8
CAN.G355.13 Capsicum annuum HOM05D001641 ORTHO05D001667 7.4e-15 84.0 125 41.6
Duzib128G0887 Durio zibethinus HOM05D001641 ORTHO05D001667 7.4e-15 84.0 130 43.8
CiPaw.09G206200 Carya illinoinensis HOM05D001641 ORTHO05D001667 1.3e-14 83.2 136 41.2
Duzib106G0289 Durio zibethinus HOM05D001641 ORTHO05D001667 1.7e-14 82.8 133 41.4
Potri.016G111400 Populus trichocarpa HOM05D001641 ORTHO05D001667 1.7e-14 82.8 134 44.0
Cfa017255 Carpinus fangiana HOM05D001641 ORTHO05D001667 2.2e-14 82.4 135 42.2
Haze_20951 Corylus avellana HOM05D001641 ORTHO05D001667 2.2e-14 82.4 135 42.2
Haze_20953 Corylus avellana HOM05D001641 ORTHO05D001667 2.2e-14 82.4 135 42.2
Prupe.6G270900 Prunus persica HOM05D001641 ORTHO05D001667 2.8e-14 82.0 127 47.2
Cc06_g01660 Coffea canephora HOM05D001641 ORTHO05D001667 3.7e-14 81.6 106 47.2
MD04G1147100 Malus domestica HOM05D001641 ORTHO05D001667 3.7e-14 81.6 131 44.3
Dinv37084 Davidia involucrata HOM05D001641 ORTHO05D001667 4.8e-14 81.3 135 38.5
TWI77G0066 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 4.8e-14 81.3 129 45.7
CSS0004795 Camellia sinensis var. sinensis HOM05D001641 ORTHO05D001667 6.3e-14 80.9 131 43.5
CSS0016472 Camellia sinensis var. sinensis HOM05D001641 ORTHO05D001667 6.3e-14 80.9 131 43.5
MSTRG.26798 Avicennia marina HOM05D001641 ORTHO05D001667 8.2e-14 80.5 134 38.8
ClCG10G021840 Citrullus lanatus HOM05D001641 ORTHO05D001667 1.1e-13 80.1 127 40.9
MD12G1160400 Malus domestica HOM05D001641 ORTHO05D001667 1.1e-13 80.1 132 43.9
Solyc10g085070.3 Solanum lycopersicum HOM05D001641 ORTHO05D001667 1.1e-13 80.1 119 45.4
Sopen10g034530 Solanum pennellii HOM05D001641 ORTHO05D001667 1.1e-13 80.1 119 45.4
PGSC0003DMG400011018 Solanum tuberosum HOM05D001641 ORTHO05D001667 1.1e-13 80.1 119 45.4
CANSAT35G1325 Cannabis sativa HOM05D001641 ORTHO05D001667 1.8e-13 79.3 129 41.9
Gohir.A04G088300 Gossypium hirsutum HOM05D001641 ORTHO05D001667 1.8e-13 79.3 132 41.7
Nitab4.5_0000008g0730 Nicotiana tabacum HOM05D001641 ORTHO05D001667 1.8e-13 79.3 141 41.8
GSVIVG01034008001 Vitis vinifera HOM05D001641 ORTHO05D001667 3.1e-13 78.6 105 46.7
Gohir.D04G128700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 4.1e-13 78.2 132 40.9
Manes.08G087800 Manihot esculenta HOM05D001641 ORTHO05D001667 4.1e-13 78.2 140 40.7
Nitab4.5_0001837g0010 Nicotiana tabacum HOM05D001641 ORTHO05D001667 4.1e-13 78.2 141 41.1
Hma1.2p1_0244F.1_g101220 Hydrangea macrophylla HOM05D001641 ORTHO05D001667 5.3e-13 77.8 133 42.9
Peaxi162Scf00009g00195 Petunia axillaris HOM05D001641 ORTHO05D001667 5.3e-13 77.8 121 43.8
Atru.chr8.2199 Acer truncatum HOM05D001641 ORTHO05D001667 7.0e-13 77.4 137 42.3
Gorai.007G378100 Gossypium raimondii HOM05D001641 ORTHO05D001667 7.0e-13 77.4 118 42.4
TWI74G0768 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 9.1e-13 77.0 133 45.1
Gohir.A11G328700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 1.2e-12 76.6 120 45.0
Cpa.g.sc163.1 Carica papaya HOM05D001641 ORTHO05D001667 2.0e-12 75.9 132 39.4
Dinv35512 Davidia involucrata HOM05D001641 ORTHO05D001667 2.0e-12 75.9 135 40.7
Gorai.012G111800 Gossypium raimondii HOM05D001641 ORTHO05D001667 2.0e-12 75.9 132 40.2
CAN.G1297.3 Capsicum annuum HOM05D001641 ORTHO05D001667 3.5e-12 75.1 115 45.2
Oeu004615.1 Olea europaea HOM05D001641 ORTHO05D001667 5.9e-12 74.3 141 34.8
TWI53G0423 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 1.0e-11 73.6 127 42.5
Nitab4.5_0004912g0080 Nicotiana tabacum HOM05D001641 ORTHO05D001667 1.3e-11 73.2 120 42.5
Nitab4.5_0000652g0140 Nicotiana tabacum HOM05D001641 ORTHO05D001667 1.7e-11 72.8 122 41.8
TAR623G0053 Trochodendron aralioides HOM05D001641 ORTHO05D001667 1.7e-11 72.8 132 37.9
Oeu044361.1 Olea europaea HOM05D001641 ORTHO05D001667 3.8e-11 71.6 141 36.9
Lj3A956T51 Lonicera japonica HOM05D001641 ORTHO05D001667 5.0e-11 71.2 119 40.3
Sc01g0006830 Simmondsia chinensis HOM05D001641 ORTHO05D001667 6.5e-11 70.9 134 39.6
AUR62025773 Chenopodium quinoa HOM05D001641 ORTHO05D001667 1.9e-10 69.3 52 67.3
AUR62041358 Chenopodium quinoa HOM05D001641 ORTHO05D001667 1.9e-10 69.3 52 67.3
Sed0022239 Sechium edule HOM05D001641 ORTHO05D001667 2.5e-10 68.9 117 42.7
MSTRG.10231 Avicennia marina HOM05D001641 ORTHO05D001667 3.2e-10 68.6 49 71.4
SGA_v2.0_scaffold75G24999 Striga asiatica HOM05D001641 ORTHO05D001667 3.2e-10 68.6 109 41.3
Hma1.2p1_0763F.1_g214660 Hydrangea macrophylla HOM05D001641 ORTHO05D001667 4.2e-10 68.2 132 38.6
PGR031G0169 Punica granatum HOM05D001641 ORTHO05D001667 4.2e-10 68.2 49 75.5
SHI12785 Sapria himalayana HOM05D001641 ORTHO05D001667 4.2e-10 68.2 47 70.2
CARHR083430 Cardamine hirsuta HOM05D001641 ORTHO05D001667 5.5e-10 67.8 115 43.5
Migut.J00224 Erythranthe guttata HOM05D001641 ORTHO05D001667 5.5e-10 67.8 120 40.0
Lj2C80T3 Lonicera japonica HOM05D001641 ORTHO05D001667 7.2e-10 67.4 131 36.6
Nn2g13606 Nelumbo nucifera HOM05D001641 ORTHO05D001667 9.4e-10 67.0 95 44.2
AL3G20130 Arabidopsis lyrata HOM05D001641 ORTHO05D001667 1.6e-09 66.2 115 40.9
Migut.L01994 Erythranthe guttata HOM05D001641 ORTHO05D001667 1.6e-09 66.2 134 38.1
Gohir.A01G225200 Gossypium hirsutum HOM05D001641 ORTHO05D001667 1.6e-09 66.2 109 41.3
Gorai.002G261000 Gossypium raimondii HOM05D001641 ORTHO05D001667 1.6e-09 66.2 109 41.3
DCAR_015457 Daucus carota HOM05D001641 ORTHO05D001667 2.1e-09 65.9 129 36.4
HanXRQChr08g0220551 Helianthus annuus HOM05D001641 ORTHO05D001667 2.1e-09 65.9 130 33.8
Oeu015015.2 Olea europaea HOM05D001641 ORTHO05D001667 2.7e-09 65.5 131 37.4
Lalb_Chr01g0022911 Lupinus albus HOM05D001641 ORTHO05D001667 3.6e-09 65.1 52 65.4
Gohir.D01G214800 Gossypium hirsutum HOM05D001641 ORTHO05D001667 4.7e-09 64.7 109 40.4
unitig_899.g15417 Utricularia gibba HOM05D001641 ORTHO05D001667 4.7e-09 64.7 114 37.7
arahy.Tifrunner.gnm1.ann1.4BEG1R Arachis hypogaea HOM05D001641 ORTHO05D001667 6.1e-09 64.3 142 32.4
Aa31LG3G1600 Aethionema arabicum HOM05D001641 ORTHO05D001667 8.0e-09 63.9 48 68.8
THA.LOC104827040 Tarenaya hassleriana HOM05D001641 ORTHO05D001667 8.0e-09 63.9 73 50.7
Thhalv10020222m.g Eutrema salsugineum HOM05D001641 ORTHO05D001667 1.0e-08 63.5 47 63.8
MSTRG.5598 Avicennia marina HOM05D001641 ORTHO05D001667 1.4e-08 63.2 43 74.4
ECA236G1576 Erigeron canadensis HOM05D001641 ORTHO05D001667 1.4e-08 63.2 47 63.8
Rhsim05G0206300 Rhododendron simsii HOM05D001641 ORTHO05D001667 1.4e-08 63.2 52 65.4
ECA247G1117 Erigeron canadensis HOM05D001641 ORTHO05D001667 2.3e-08 62.4 122 35.2
Sp3g07520 Schrenkiella parvula HOM05D001641 ORTHO05D001667 2.3e-08 62.4 48 68.8
arahy.Tifrunner.gnm1.ann1.JIF81Q Arachis hypogaea HOM05D001641 ORTHO05D001667 3.0e-08 62.0 53 64.2
arahy.Tifrunner.gnm1.ann1.UC3VQR Arachis hypogaea HOM05D001641 ORTHO05D001667 3.0e-08 62.0 53 64.2
Lj1g0001530 Lotus japonicus HOM05D001641 ORTHO05D001667 3.0e-08 62.0 46 67.4
Sed0014233 Sechium edule HOM05D001641 ORTHO05D001667 3.0e-08 62.0 124 34.7
Actinidia13778 Actinidia chinensis HOM05D001641 ORTHO05D001667 4.0e-08 61.6 132 39.4
BcaNung02767 Brassica carinata HOM05D001641 ORTHO05D001667 4.0e-08 61.6 94 46.8
Lalb_Chr13g0291271 Lupinus albus HOM05D001641 ORTHO05D001667 4.0e-08 61.6 126 38.1
Sc07g0006840 Simmondsia chinensis HOM05D001641 ORTHO05D001667 4.0e-08 61.6 78 47.4
Actinidia29129 Actinidia chinensis HOM05D001641 ORTHO05D001667 6.7e-08 60.8 48 66.7
TAR369G0244 Trochodendron aralioides HOM05D001641 ORTHO05D001667 1.1e-07 60.1 132 31.8
BcaC09g48051 Brassica carinata HOM05D001641 ORTHO05D001667 2.0e-07 59.3 41 70.7
C09p74550 Brassica napus HOM05D001641 ORTHO05D001667 2.0e-07 59.3 94 46.8
BolC1t05476H Brassica oleracea HOM05D001641 ORTHO05D001667 2.0e-07 59.3 41 70.7
Carub.0006s0072 Capsella rubella HOM05D001641 ORTHO05D001667 2.0e-07 59.3 92 44.6
MELO3C009191.2 Cucumis melo HOM05D001641 ORTHO05D001667 2.0e-07 59.3 127 35.4
CsaV3_3G034150 Cucumis sativus L. HOM05D001641 ORTHO05D001667 2.0e-07 59.3 127 35.4
A03p36150 Brassica napus HOM05D001641 ORTHO05D001667 2.6e-07 58.9 43 74.4
DCAR_028828 Daucus carota HOM05D001641 ORTHO05D001667 2.6e-07 58.9 124 36.3
Lsat_1_v5_gn_8_99861 Lactuca sativa HOM05D001641 ORTHO05D001667 2.6e-07 58.9 59 55.9
AT5G01170 Arabidopsis thaliana HOM05D001641 ORTHO05D001667 3.3e-07 58.5 91 44.0
Thhalv10015965m.g Eutrema salsugineum HOM05D001641 ORTHO05D001667 3.3e-07 58.5 107 37.4
Phvul.008G107800 Phaseolus vulgaris HOM05D001641 ORTHO05D001667 3.3e-07 58.5 40 72.5
BolC9t60187H Brassica oleracea HOM05D001641 ORTHO05D001667 4.4e-07 58.2 94 44.7
BraA01t04318Z Brassica rapa HOM05D001641 ORTHO05D001667 4.4e-07 58.2 44 68.2
Sp6g40530 Schrenkiella parvula HOM05D001641 ORTHO05D001667 4.4e-07 58.2 105 39.0
Thhalv10017664m.g Eutrema salsugineum HOM05D001641 ORTHO05D001667 5.7e-07 57.8 42 66.7
SalBow5G3431 Salvia bowleyana HOM05D001641 ORTHO05D001667 5.7e-07 57.8 99 41.4
AL6G11020 Arabidopsis lyrata HOM05D001641 ORTHO05D001667 7.5e-07 57.4 100 42.0
HanXRQChr15g0464001 Helianthus annuus HOM05D001641 ORTHO05D001667 7.5e-07 57.4 44 61.4
Oeu028729.2 Olea europaea HOM05D001641 ORTHO05D001667 7.5e-07 57.4 51 54.9
Lsat_1_v5_gn_9_36081 Lactuca sativa HOM05D001641 ORTHO05D001667 9.7e-07 57.0 38 73.7
Gohir.D11G347700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 1.3e-06 56.6 44 61.4
unitig_46.g18408 Utricularia gibba HOM05D001641 ORTHO05D001667 1.3e-06 56.6 125 32.0
HanXRQChr10g0286991 Helianthus annuus HOM05D001641 ORTHO05D001667 1.7e-06 56.2 47 55.3
Psat3g130960 Pisum sativum HOM05D001641 ORTHO05D001667 1.7e-06 56.2 51 58.8
THA.LOC104824521 Tarenaya hassleriana HOM05D001641 ORTHO05D001667 1.7e-06 56.2 46 65.2
Ca_09169_v3 Cicer arietinum L. HOM05D001641 ORTHO05D001667 2.2e-06 55.8 51 58.8
TAR633G1677 Trochodendron aralioides HOM05D001641 ORTHO05D001667 2.2e-06 55.8 133 33.1
VMungo0331G1007 Vigna mungo HOM05D001641 ORTHO05D001667 2.2e-06 55.8 45 57.8
SGA_v2.0_scaffold240G44106 Striga asiatica HOM05D001641 ORTHO05D001667 2.8e-06 55.5 105 35.2
A10p33630 Brassica napus HOM05D001641 ORTHO05D001667 3.7e-06 55.1 88 46.6
BraA10t45394Z Brassica rapa HOM05D001641 ORTHO05D001667 3.7e-06 55.1 88 46.6
MELO3C003225.2 Cucumis melo HOM05D001641 ORTHO05D001667 3.7e-06 55.1 125 33.6
ClCG04G007240 Citrullus lanatus HOM05D001641 ORTHO05D001667 4.8e-06 54.7 125 34.4
CARHR211490 Cardamine hirsuta HOM05D001641 ORTHO05D001667 6.3e-06 54.3 91 41.8
Phvul.010G008500 Phaseolus vulgaris HOM05D001641 ORTHO05D001667 6.3e-06 54.3 56 50.0
Medtr7g066730 Medicago truncatula HOM05D001641 ORTHO05D001667 8.2e-06 53.9 52 57.7
TPR.G1584 Trifolium pratense HOM05D001641 ORTHO05D001667 8.2e-06 53.9 51 56.9


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