Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.4e-190 668.7 336 100.0
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.1e-182 641.7 349 94.3
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 1.2e-181 639.8 336 96.7
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.6e-181 637.1 349 94.0
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 9.9e-181 636.7 336 96.4
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.3e-175 619.8 332 94.0
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 7.9e-162 573.9 322 87.0
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 1.1e-160 570.1 322 86.6
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 3.3e-160 568.5 334 82.6
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 3.3e-160 568.5 332 83.4
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 2.8e-159 565.5 334 82.3
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 4.8e-159 564.7 320 85.6
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 6.2e-159 564.3 334 82.3
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 1.8e-158 562.8 332 82.8
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 4.5e-157 558.1 330 82.4
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 4.5e-157 558.1 334 82.3
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 4.5e-157 558.1 334 82.0
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 2.2e-156 555.8 319 84.0
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 4.2e-155 551.6 330 82.1
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 7.1e-155 550.8 334 81.7
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 7.1e-155 550.8 319 84.0
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 1.2e-154 550.1 320 83.1
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.2e-154 550.1 332 81.3
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 1.6e-154 549.7 334 81.7
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 4.6e-154 548.1 332 81.3
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 6.0e-154 547.7 320 82.5
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.3e-153 546.6 334 80.2
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 1.3e-153 546.6 322 82.0
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 1.8e-153 546.2 335 80.9
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 1.8e-153 546.2 332 81.0
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 1.8e-153 546.2 335 80.0
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 3.9e-153 545.0 320 82.2
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 3.9e-153 545.0 320 82.5
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 5.7e-152 541.2 319 80.3
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 5.7e-152 541.2 334 79.9
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 3.7e-151 538.5 338 77.5
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 3.7e-151 538.5 322 80.7
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 3.7e-151 538.5 338 77.8
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 6.3e-151 537.7 330 80.9
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 1.1e-150 537.0 370 73.8
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 1.1e-150 537.0 340 77.9
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 1.1e-150 537.0 317 81.4
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 1.4e-150 536.6 335 77.9
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 1.8e-150 536.2 332 78.9
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 2.4e-150 535.8 335 77.0
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 5.3e-150 534.6 332 78.6
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.2e-149 533.5 334 78.1
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 1.5e-149 533.1 371 71.4
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 2.6e-149 532.3 322 80.1
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 3.4e-149 531.9 332 78.3
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 7.7e-149 530.8 332 77.7
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 2.2e-148 529.3 333 76.3
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 5.0e-148 528.1 332 77.1
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 5.0e-148 528.1 337 77.7
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 6.5e-148 527.7 328 77.4
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 8.5e-148 527.3 338 77.2
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 1.1e-147 526.9 335 78.2
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 1.4e-147 526.6 322 80.4
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 1.9e-147 526.2 322 78.9
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 7.2e-147 524.2 327 78.6
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 7.2e-147 524.2 321 78.8
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.6e-146 523.1 337 76.9
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.6e-146 523.1 337 76.9
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.6e-146 523.1 339 77.6
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 1.6e-146 523.1 337 76.9
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 3.6e-146 521.9 398 68.6
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 3.6e-146 521.9 336 76.2
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 1.0e-145 520.4 319 79.0
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 1.0e-145 520.4 339 76.7
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 1.4e-145 520.0 336 76.8
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 1.4e-145 520.0 334 75.1
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.4e-145 520.0 373 71.0
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 5.1e-145 518.1 320 79.7
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 6.7e-145 517.7 323 78.3
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 1.5e-144 516.5 332 75.9
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 4.3e-144 515.0 374 69.3
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 5.7e-144 514.6 334 76.3
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 7.4e-144 514.2 334 75.4
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 1.7e-143 513.1 319 77.4
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 2.2e-143 512.7 334 75.1
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 6.3e-143 511.1 323 78.6
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 6.3e-143 511.1 323 78.6
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 6.3e-143 511.1 332 75.6
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 1.4e-142 510.0 336 75.6
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 5.3e-142 508.1 334 76.3
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 5.3e-142 508.1 338 75.1
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 5.3e-142 508.1 321 75.1
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 2.9e-140 502.3 305 81.0
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 2.3e-137 492.7 341 71.3
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 3.9e-137 491.9 323 76.8
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.4e-134 482.6 336 72.3
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 3.8e-132 475.3 335 69.6
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 1.1e-131 473.8 338 72.5
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.0e-129 467.2 324 70.1
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.1e-128 463.8 321 70.1
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 7.4e-128 461.1 324 69.4
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 1.6e-122 443.4 248 84.7
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.4e-121 440.3 250 84.4
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 1.2e-120 437.2 330 65.5
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 2.6e-120 436.0 338 63.9
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 2.4e-118 429.5 243 84.4
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 3.1e-118 429.1 247 83.8
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 2.0e-117 426.4 248 81.5
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 8.8e-113 411.0 328 63.4
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 1.3e-108 397.1 369 59.9
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 3.3e-107 392.5 242 76.9
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 3.3e-107 392.5 333 64.0
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.2e-106 390.6 318 63.2
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 2.3e-105 386.3 311 63.3
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 2.5e-91 339.7 316 55.7
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 3.1e-89 332.8 196 80.6
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 4.3e-83 312.4 233 67.0
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 4.4e-72 275.8 330 46.4
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 4.2e-70 269.2 207 68.6
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 7.3e-67 258.5 242 57.0
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 1.1e-65 254.6 265 49.4
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 2.0e-64 250.4 136 87.5
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 1.9e-62 243.8 132 84.8
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 2.1e-61 240.4 311 46.3
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.0e-61 238.8 136 93.4
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.7e-60 237.3 134 94.0
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 5.1e-60 235.7 134 93.3
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 2.1e-58 230.3 127 83.5
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.6e-56 223.4 128 93.0
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.6e-56 223.4 128 93.0
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 2.9e-55 219.9 243 48.6
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 2.9e-55 219.9 128 91.4
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 1.9e-54 217.2 125 91.2
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 1.9e-38 164.1 97 90.7
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 4.2e-38 162.9 107 72.0
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 1.2e-37 161.4 109 75.2
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-33 147.9 148 50.0
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 1.9e-30 137.5 200 44.5
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 2.4e-25 120.6 73 80.8
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 3.8e-23 113.2 78 67.9
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 1.4e-20 104.8 61 83.6
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 3.9e-20 103.2 80 65.0
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 5.7e-19 99.4 189 37.6
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 4.5e-16 89.7 68 63.2
PRCOL_00002191 Prasinoderma coloniale HOM05D005162 ORTHO05D333607 1.3e-15 88.2 213 30.5
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 1.5e-14 84.7 66 69.7
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 7.2e-14 82.4 86 51.2
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 3.0e-12 77.0 64 60.9
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 6.7e-12 75.9 52 67.3
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 1.3e-10 71.6 51 70.6
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 3.1e-09 67.0 93 44.1
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 2.9e-07 60.5 54 55.6
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 1.5e-06 58.2 60 51.7
SMO367G1061 Selaginella moellendorffii HOM05D001132 ORTHO05D003115 4.2e-06 56.6 167 28.1


User provided reference genes

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