Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0440 Fragaria x ananassa HOM05D001298 ORTHO05D001110 9.0e-40 166.4 80 100.0
FvH4_4g14840 Fragaria vesca HOM05D001298 ORTHO05D001110 5.5e-29 130.6 73 87.7
FAN07G2278 Fragaria x ananassa HOM05D001298 ORTHO05D001110 5.5e-29 130.6 73 87.7
FAN12G0254 Fragaria x ananassa HOM05D001298 ORTHO05D001110 5.5e-29 130.6 73 87.7
FAN17G1335 Fragaria x ananassa HOM05D001298 ORTHO05D001110 5.5e-29 130.6 73 87.7
RcHm_v2.0_Chr4g0417491 Rosa chinensis HOM05D001298 ORTHO05D001110 1.6e-28 129.0 73 86.3
Prupe.1G153400 Prunus persica HOM05D001298 ORTHO05D001110 7.9e-28 126.7 73 84.9
RcHm_v2.0_Chr4g0417421 Rosa chinensis HOM05D001298 ORTHO05D001110 1.0e-27 126.3 73 84.9
CANSAT78G0642 Cannabis sativa HOM05D001298 ORTHO05D001110 2.3e-27 125.2 73 83.6
Manes.03G182500 Manihot esculenta HOM05D001298 ORTHO05D001110 3.3e-26 121.3 73 80.8
MD13G1185800 Malus domestica HOM05D001298 ORTHO05D001110 4.3e-26 120.9 73 82.2
MD16G1186600 Malus domestica HOM05D001298 ORTHO05D001110 4.3e-26 120.9 73 82.2
CAN.G69.21 Capsicum annuum HOM05D001298 ORTHO05D001110 7.4e-26 120.2 73 80.8
Sabra19G0033900 Salix brachista HOM05D001298 ORTHO05D001110 7.4e-26 120.2 84 73.8
THA.LOC104802755 Tarenaya hassleriana HOM05D001298 ORTHO05D001110 1.7e-25 119.0 84 71.4
Aqoxy2G03300 Aquilegia oxysepala HOM05D001298 ORTHO05D001110 2.2e-25 118.6 67 88.1
CsaV3_6G015110 Cucumis sativus L. HOM05D001298 ORTHO05D001110 2.2e-25 118.6 73 78.1
MELO3C021410.2 Cucumis melo HOM05D001298 ORTHO05D001110 3.7e-25 117.9 73 76.7
Thecc.04G225000 Theobroma cacao HOM05D001298 ORTHO05D001110 3.7e-25 117.9 73 78.1
Sed0023718 Sechium edule HOM05D001298 ORTHO05D001110 4.8e-25 117.5 84 67.9
Nitab4.5_0000630g0060 Nicotiana tabacum HOM05D001298 ORTHO05D001110 6.3e-25 117.1 73 79.5
Nitab4.5_0000968g0010 Nicotiana tabacum HOM05D001298 ORTHO05D001110 6.3e-25 117.1 73 79.5
THA.LOC104818807 Tarenaya hassleriana HOM05D001298 ORTHO05D001110 6.3e-25 117.1 73 78.1
TWI53G1300 Tripterygium wilfordii HOM05D001298 ORTHO05D001110 6.3e-25 117.1 67 86.6
Solyc01g079820.3 Solanum lycopersicum HOM05D001298 ORTHO05D001110 1.1e-24 116.3 73 79.5
Sopen01g031580 Solanum pennellii HOM05D001298 ORTHO05D001110 1.1e-24 116.3 73 79.5
PGSC0003DMG400008994 Solanum tuberosum HOM05D001298 ORTHO05D001110 1.1e-24 116.3 73 79.5
Potri.019G024000 Populus trichocarpa HOM05D001298 ORTHO05D001110 1.8e-24 115.5 73 78.1
QL06p003739 Quercus lobata HOM05D001298 ORTHO05D001110 1.8e-24 115.5 72 77.8
BcaC05g30062 Brassica carinata HOM05D001298 ORTHO05D001110 2.4e-24 115.2 84 69.0
A05p41950 Brassica napus HOM05D001298 ORTHO05D001110 2.4e-24 115.2 84 69.0
BraA05t22917Z Brassica rapa HOM05D001298 ORTHO05D001110 2.4e-24 115.2 84 69.0
Cpa.g.sc147.19 Carica papaya HOM05D001298 ORTHO05D001110 2.4e-24 115.2 73 75.3
Peaxi162Scf01336g00018 Petunia axillaris HOM05D001298 ORTHO05D001110 2.4e-24 115.2 73 78.1
Aa31LG5G16540 Aethionema arabicum HOM05D001298 ORTHO05D001110 3.1e-24 114.8 73 76.7
CARHR080550 Cardamine hirsuta HOM05D001298 ORTHO05D001110 3.1e-24 114.8 73 75.3
ClCG06G005880 Citrullus lanatus HOM05D001298 ORTHO05D001110 4.1e-24 114.4 73 74.0
Thhalv10021549m.g Eutrema salsugineum HOM05D001298 ORTHO05D001110 4.1e-24 114.4 73 75.3
Sp3g05000 Schrenkiella parvula HOM05D001298 ORTHO05D001110 4.1e-24 114.4 73 75.3
Carub.0003s0549 Capsella rubella HOM05D001298 ORTHO05D001110 5.3e-24 114.0 69 79.7
PSO170G6057 Papaver somniferum HOM05D001298 ORTHO05D001110 5.3e-24 114.0 69 81.2
C05p61200 Brassica napus HOM05D001298 ORTHO05D001110 6.9e-24 113.6 73 75.3
BolC5t34780H Brassica oleracea HOM05D001298 ORTHO05D001110 6.9e-24 113.6 73 75.3
COL.COLO4_20848 Corchorus olitorius HOM05D001298 ORTHO05D001110 6.9e-24 113.6 73 75.3
Hma1.2p1_0511F.1_g168990 Hydrangea macrophylla HOM05D001298 ORTHO05D001110 6.9e-24 113.6 73 78.1
Atru.chr4.2534 Acer truncatum HOM05D001298 ORTHO05D001110 9.1e-24 113.2 67 80.6
AL3G16890 Arabidopsis lyrata HOM05D001298 ORTHO05D001110 1.2e-23 112.8 69 78.3
AT3G06050 Arabidopsis thaliana HOM05D001298 ORTHO05D001110 1.2e-23 112.8 69 78.3
Gohir.A10G124400 Gossypium hirsutum HOM05D001298 ORTHO05D001110 1.2e-23 112.8 67 83.6
Gohir.D10G141900 Gossypium hirsutum HOM05D001298 ORTHO05D001110 1.2e-23 112.8 67 83.6
Lj6g0011312 Lotus japonicus HOM05D001298 ORTHO05D001110 1.2e-23 112.8 84 70.2
AL831U10010 Arabidopsis lyrata HOM05D001298 ORTHO05D001110 1.5e-23 112.5 67 80.6
Cc03_g03290 Coffea canephora HOM05D001298 ORTHO05D001110 1.5e-23 112.5 73 75.3
PSO302G0118 Papaver somniferum HOM05D001298 ORTHO05D001110 1.5e-23 112.5 69 81.2
Ciclev10005822m.g Citrus clementina HOM05D001298 ORTHO05D001110 2.0e-23 112.1 67 80.6
PGR142G2799 Punica granatum HOM05D001298 ORTHO05D001110 2.0e-23 112.1 73 76.7
Gorai.011G158200 Gossypium raimondii HOM05D001298 ORTHO05D001110 2.6e-23 111.7 73 75.3
arahy.Tifrunner.gnm1.ann1.FJN7R5 Arachis hypogaea HOM05D001298 ORTHO05D001110 4.5e-23 110.9 73 75.3
Cfa009359 Carpinus fangiana HOM05D001298 ORTHO05D001110 4.5e-23 110.9 73 75.3
Haze_12404 Corylus avellana HOM05D001298 ORTHO05D001110 4.5e-23 110.9 73 75.3
Rhsim04G0203600 Rhododendron simsii HOM05D001298 ORTHO05D001110 4.5e-23 110.9 73 75.3
MSTRG.24754 Avicennia marina HOM05D001298 ORTHO05D001110 5.9e-23 110.5 73 74.0
Duzib151G1052 Durio zibethinus HOM05D001298 ORTHO05D001110 5.9e-23 110.5 73 74.0
Migut.N00159 Erythranthe guttata HOM05D001298 ORTHO05D001110 5.9e-23 110.5 73 72.6
Actinidia40157 Actinidia chinensis HOM05D001298 ORTHO05D001110 7.7e-23 110.2 73 72.6
Ca_00630_v3 Cicer arietinum L. HOM05D001298 ORTHO05D001110 7.7e-23 110.2 73 74.0
HanXRQChr12g0359601 Helianthus annuus HOM05D001298 ORTHO05D001110 7.7e-23 110.2 73 74.0
Lj6A573T93 Lonicera japonica HOM05D001298 ORTHO05D001110 7.7e-23 110.2 73 72.6
Lj6A576T58 Lonicera japonica HOM05D001298 ORTHO05D001110 7.7e-23 110.2 73 72.6
Medtr2g022660 Medicago truncatula HOM05D001298 ORTHO05D001110 7.7e-23 110.2 84 67.9
TPR.G7650 Trifolium pratense HOM05D001298 ORTHO05D001110 7.7e-23 110.2 84 67.9
Glyma.13G207000 Glycine max HOM05D001298 ORTHO05D001110 1.0e-22 109.8 73 75.3
Glyma.15G105600 Glycine max HOM05D001298 ORTHO05D001110 1.0e-22 109.8 73 75.3
Nn4g26226 Nelumbo nucifera HOM05D001298 ORTHO05D001110 1.0e-22 109.8 73 72.6
arahy.Tifrunner.gnm1.ann1.2N9FFP Arachis hypogaea HOM05D001298 ORTHO05D001110 1.3e-22 109.4 73 74.0
Phvul.006G151800 Phaseolus vulgaris HOM05D001298 ORTHO05D001110 1.3e-22 109.4 73 75.3
VMungo0540G1628 Vigna mungo HOM05D001298 ORTHO05D001110 1.3e-22 109.4 73 75.3
Lalb_Chr18g0056191 Lupinus albus HOM05D001298 ORTHO05D001110 1.7e-22 109.0 73 72.6
CiPaw.02G093700 Carya illinoinensis HOM05D001298 ORTHO05D001110 2.2e-22 108.6 73 72.6
CSS0028294 Camellia sinensis var. sinensis HOM05D001298 ORTHO05D001110 2.9e-22 108.2 67 80.6
DCAR_027179 Daucus carota HOM05D001298 ORTHO05D001110 2.9e-22 108.2 67 79.1
TAR365G0327 Trochodendron aralioides HOM05D001298 ORTHO05D001110 2.9e-22 108.2 73 72.6
GSVIVG01017908001 Vitis vinifera HOM05D001298 ORTHO05D001110 2.9e-22 108.2 73 71.2
CiPaw.01G161700 Carya illinoinensis HOM05D001298 ORTHO05D001110 3.8e-22 107.8 73 74.0
CDE02G1984 Ceratophyllum demersum HOM05D001298 ORTHO05D001110 5.0e-22 107.5 72 69.4
Eucgr.B01112 Eucalyptus grandis HOM05D001298 ORTHO05D001110 5.0e-22 107.5 73 72.6
Psat1g182960 Pisum sativum HOM05D001298 ORTHO05D001110 5.0e-22 107.5 73 72.6
SEGI_26001 Sequoiadendron giganteum HOM05D001298 ORTHO05D001110 5.0e-22 107.5 67 76.1
TAR636G0563 Trochodendron aralioides HOM05D001298 ORTHO05D001110 5.0e-22 107.5 69 71.0
Dinv44494 Davidia involucrata HOM05D001298 ORTHO05D001110 6.5e-22 107.1 73 71.2
SalBow5G2912 Salvia bowleyana HOM05D001298 ORTHO05D001110 6.5e-22 107.1 73 71.2
SalBow5G3279 Salvia bowleyana HOM05D001298 ORTHO05D001110 6.5e-22 107.1 73 71.2
arahy.Tifrunner.gnm1.ann1.QS5V0D Arachis hypogaea HOM05D001298 ORTHO05D001110 1.4e-21 105.9 73 72.6
Sc19g0004410 Simmondsia chinensis HOM05D001298 ORTHO05D001110 2.5e-21 105.1 73 69.9
Ah.09g228400 Amaranthus hybridus HOM05D001298 ORTHO05D001110 5.5e-21 104.0 67 76.1
unitig_749.g13402 Utricularia gibba HOM05D001298 ORTHO05D001110 7.2e-21 103.6 72 70.8
AUR62038194 Chenopodium quinoa HOM05D001298 ORTHO05D001110 1.2e-20 102.8 73 68.5
EL10As3g23297 Beta vulgaris HOM05D001298 ORTHO05D001110 2.7e-20 101.7 84 61.9
AUR62038066 Chenopodium quinoa HOM05D001298 ORTHO05D001110 3.6e-20 101.3 73 67.1
Oeu030325.1 Olea europaea HOM05D001298 ORTHO05D001110 3.6e-20 101.3 74 67.6
Os01g0266600 Oryza sativa ssp. japonica HOM05D001298 ORTHO05D001110 3.6e-20 101.3 73 67.1
Lsat_1_v5_gn_5_73880 Lactuca sativa HOM05D001298 ORTHO05D001110 4.7e-20 100.9 73 65.8
SGA_v2.0_scaffold166G38365 Striga asiatica HOM05D002130 ORTHO05D001110 6.7e-19 97.1 56 82.1
ECA234G0450 Erigeron canadensis HOM05D001298 ORTHO05D002937 5.7e-18 94.0 72 62.5
Mapoly0023s0016 Marchantia polymorpha HOM05D001298 ORTHO05D001110 4.8e-17 90.9 73 60.3
Phvul.006G151701 Phaseolus vulgaris HOM05D001298 ORTHO05D001110 1.4e-16 89.4 67 68.7
Pp3c11_23160 Physcomitrium patens HOM05D001298 ORTHO05D001110 2.4e-16 88.6 63 68.3
Glyma.13G206900 Glycine max HOM05D001298 ORTHO05D001110 5.3e-16 87.4 73 63.0
SMO367G1092 Selaginella moellendorffii HOM05D001298 ORTHO05D001110 2.0e-15 85.5 83 54.2
VMungo0540G1766 Vigna mungo HOM05D001298 ORTHO05D001110 2.0e-15 85.5 67 67.2
ATR0626G353 Amborella trichopoda HOM05D001298 ORTHO05D001110 1.3e-14 82.8 73 56.2
CBR_g11993 Chara braunii HOM05D001298 ORTHO05D001110 3.8e-14 81.3 70 58.6
HPP92_003558 Vanilla planifolia HOM05D001298 ORTHO05D001110 3.5e-07 58.2 33 75.8
CSS0038829 Camellia sinensis var. sinensis HOM05D001298 ORTHO05D001110 1.7e-06 55.8 73 46.6
CSS0049870 Camellia sinensis var. sinensis HOM05D001298 ORTHO05D001110 2.2e-06 55.5 73 49.3
RcHm_v2.0_Chr4g0395851 Rosa chinensis HOM05D001298 ORTHO05D001110 2.9e-06 55.1 42 64.3


User provided reference genes

Program Settings