Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.8e-235 817.4 398 100.0
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 3.3e-231 804.7 397 98.2
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.8e-230 801.6 397 98.0
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.7e-230 800.8 397 97.5
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 6.8e-229 797.0 397 97.0
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 4.9e-211 737.6 396 89.6
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 9.2e-210 733.4 396 89.1
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 2.7e-193 678.7 397 82.4
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 9.9e-188 660.2 397 80.4
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 1.1e-170 603.6 400 72.8
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 1.0e-168 597.0 407 71.5
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 1.9e-167 592.8 398 72.4
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 7.4e-167 590.9 396 71.7
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 8.2e-166 587.4 401 71.1
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 1.3e-163 580.1 364 75.3
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 3.8e-163 578.6 421 67.5
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 1.9e-162 576.2 405 68.4
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 7.1e-162 574.3 408 69.6
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 4.6e-161 571.6 428 66.8
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 6.1e-161 571.2 366 74.0
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 6.1e-161 571.2 399 68.4
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 1.0e-160 570.5 394 70.3
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 3.0e-160 568.9 401 69.3
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 6.7e-160 567.8 401 70.3
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 1.1e-159 567.0 398 66.6
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 1.1e-159 567.0 398 66.6
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 5.7e-159 564.7 399 67.4
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 6.3e-158 561.2 388 68.8
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.4e-157 560.1 389 68.4
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 1.4e-157 560.1 394 67.8
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 2.4e-157 559.3 387 69.3
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 4.1e-157 558.5 388 68.8
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 4.1e-157 558.5 388 68.8
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 6.9e-157 557.8 389 67.9
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 1.2e-156 557.0 387 69.0
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 3.4e-156 555.4 388 68.6
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 3.4e-156 555.4 397 66.2
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 1.0e-155 553.9 384 65.9
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 1.3e-155 553.5 400 65.0
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.7e-155 553.1 396 68.2
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 2.2e-155 552.7 393 68.4
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 5.0e-155 551.6 366 72.7
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 5.0e-155 551.6 367 71.4
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 6.5e-155 551.2 385 66.5
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 5.5e-154 548.1 401 65.6
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 9.4e-154 547.4 388 67.0
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 1.2e-153 547.0 364 72.8
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 1.6e-153 546.6 403 66.3
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 1.0e-152 543.9 387 67.4
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 1.0e-152 543.9 387 66.4
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 2.3e-152 542.7 372 69.1
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 3.9e-152 542.0 388 66.8
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 3.9e-152 542.0 380 67.9
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 3.9e-152 542.0 401 67.3
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 8.8e-152 540.8 373 68.9
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 8.8e-152 540.8 373 68.9
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 8.8e-152 540.8 373 68.9
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.1e-151 540.4 396 66.7
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 1.5e-151 540.0 398 63.6
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 1.5e-151 540.0 385 67.3
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 2.5e-151 539.3 387 66.9
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 9.7e-151 537.3 380 67.1
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.3e-150 537.0 396 66.2
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 1.7e-150 536.6 391 66.0
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 1.7e-150 536.6 372 68.8
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 1.7e-150 536.6 372 68.8
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 1.7e-150 536.6 391 64.5
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 2.8e-150 535.8 387 65.9
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 8.2e-150 534.3 389 65.0
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 1.8e-149 533.1 381 66.1
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.8e-149 533.1 388 67.5
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 5.3e-149 531.6 398 65.6
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 6.9e-149 531.2 398 64.1
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 6.9e-149 531.2 370 66.8
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 3.4e-148 528.9 375 68.0
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 4.5e-148 528.5 377 66.3
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 2.2e-147 526.2 369 66.7
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 2.9e-147 525.8 364 69.5
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 2.9e-147 525.8 369 67.2
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 8.5e-147 524.2 364 69.2
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 4.2e-146 521.9 397 62.7
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 1.6e-145 520.0 396 64.4
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 1.4e-144 516.9 396 62.9
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 3.9e-144 515.4 396 62.9
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 5.1e-144 515.0 398 63.8
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 1.1e-143 513.8 398 62.6
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 2.2e-142 509.6 366 66.1
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 6.3e-142 508.1 382 63.4
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 2.0e-140 503.1 444 55.9
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 4.5e-140 501.9 376 66.5
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 7.7e-140 501.1 378 63.2
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 2.9e-139 499.2 374 64.4
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 3.8e-139 498.8 374 64.2
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 6.5e-139 498.0 380 64.5
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 8.5e-139 497.7 373 62.2
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 2.5e-138 496.1 378 63.2
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.6e-137 493.4 382 62.3
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 2.3e-136 489.6 365 64.4
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 3.5e-132 475.7 380 60.0
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 3.5e-132 475.7 380 60.0
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 4.5e-132 475.3 372 62.9
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 3.2e-130 469.2 358 64.2
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 9.4e-130 467.6 374 60.2
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 2.3e-128 463.0 389 59.1
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 3.1e-125 452.6 390 58.5
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 4.5e-124 448.7 385 58.7
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 7.7e-124 448.0 288 71.9
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 8.5e-123 444.5 288 71.2
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 1.1e-122 444.1 363 57.9
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.5e-119 433.7 289 70.9
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 1.5e-119 433.7 373 56.8
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 4.1e-117 425.6 371 57.7
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.6e-116 423.7 389 56.8
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 8.6e-115 417.9 599 41.6
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 1.2e-111 407.5 374 54.0
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 6.3e-110 401.7 375 52.0
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 5.4e-109 398.7 372 52.7
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 3.5e-108 396.0 369 53.9
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 7.8e-108 394.8 257 71.2
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 2.5e-106 389.8 251 70.9
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 1.8e-104 383.6 266 64.7
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 2.4e-101 373.2 371 53.9
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 3.2e-101 372.9 355 56.3
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 9.2e-101 371.3 370 49.5
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 2.3e-96 356.7 246 64.2
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 6.8e-96 355.1 247 64.0
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 6.8e-96 355.1 251 62.9
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 6.8e-96 355.1 250 65.2
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 9.8e-95 351.3 398 47.2
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 6.4e-94 348.6 234 68.8
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 1.9e-93 347.1 271 62.7
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 7.1e-93 345.1 263 66.2
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 3.3e-90 336.3 265 62.3
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.6e-84 317.4 359 47.9
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 3.0e-83 313.2 193 74.6
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.5e-66 257.7 295 51.5
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 1.8e-64 250.8 158 71.5
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 4.9e-54 216.1 211 52.6
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 4.2e-53 213.0 232 50.9
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 2.1e-44 184.1 127 66.9
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 8.7e-43 178.7 115 72.2
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 9.0e-40 168.7 151 54.3
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 7.2e-37 159.1 106 67.0
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 3.6e-36 156.8 405 32.3
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 1.0e-35 155.2 156 51.3
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.7e-33 147.9 175 49.1
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.7e-33 147.9 371 31.3
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 2.7e-28 130.6 259 32.0
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 1.7e-25 121.3 99 56.6
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 2.0e-23 114.4 86 59.3
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 5.5e-21 106.3 290 29.3
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 1.4e-19 101.7 93 53.8
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 8.8e-19 99.0 93 51.6
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 9.7e-18 95.5 93 50.5
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 1.7e-14 84.7 77 50.6
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 2.8e-09 67.4 48 52.1
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 4.8e-09 66.6 52 53.8
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 7.0e-08 62.8 55 50.9
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 7.0e-08 62.8 59 49.2


User provided reference genes

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