Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 9.5e-199 696.8 394 100.0
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.6e-190 668.3 394 94.9
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 4.1e-178 628.2 397 90.9
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.6e-172 609.0 388 90.7
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.0e-141 505.4 371 82.5
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 6.0e-137 491.5 401 77.6
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 9.7e-103 377.9 371 68.5
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 1.7e-75 287.3 423 54.1
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 2.3e-75 287.0 402 55.0
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 2.5e-74 283.5 386 51.6
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 5.2e-72 275.8 412 49.5
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 9.8e-71 271.6 421 51.1
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 1.3e-70 271.2 415 51.6
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 2.9e-70 270.0 403 50.6
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 2.9e-70 270.0 426 50.2
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 8.3e-70 268.5 405 49.4
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 8.3e-70 268.5 416 50.7
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 1.4e-69 267.7 412 50.2
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 7.0e-69 265.4 413 50.4
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 7.0e-69 265.4 413 50.4
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 9.2e-69 265.0 413 50.4
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 1.2e-68 264.6 446 46.2
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 1.6e-68 264.2 417 48.7
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 2.0e-68 263.8 417 49.2
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 3.5e-68 263.1 419 49.4
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 3.5e-68 263.1 409 50.4
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 3.5e-68 263.1 409 51.8
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.3e-67 261.2 417 48.7
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 1.7e-67 260.8 400 51.5
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 1.7e-67 260.8 391 49.9
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 2.3e-67 260.4 418 50.7
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 3.9e-67 259.6 448 45.5
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 6.6e-67 258.8 408 50.2
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 1.1e-66 258.1 405 49.9
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.5e-66 256.9 414 49.5
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 3.3e-66 256.5 402 49.3
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 7.3e-66 255.4 432 47.2
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 7.3e-66 255.4 409 49.6
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 1.6e-65 254.2 407 47.4
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 3.6e-65 253.1 390 50.0
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 4.7e-65 252.7 436 48.9
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 4.7e-65 252.7 437 46.7
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 6.2e-65 252.3 402 49.3
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 6.2e-65 252.3 402 50.0
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 1.4e-64 251.1 418 49.0
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 6.8e-64 248.8 407 49.6
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 8.9e-64 248.4 397 48.1
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 1.2e-63 248.1 398 49.7
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 2.0e-63 247.3 324 51.2
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 3.4e-63 246.5 412 47.3
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 3.4e-63 246.5 405 49.4
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 7.5e-63 245.4 391 45.5
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 1.7e-62 244.2 375 47.5
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 3.7e-62 243.0 336 50.0
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 3.7e-62 243.0 425 48.9
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 4.1e-61 239.6 412 45.1
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 5.4e-61 239.2 414 49.0
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 7.0e-61 238.8 344 48.8
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 7.0e-61 238.8 382 45.3
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 9.2e-61 238.4 339 47.8
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 1.6e-60 237.7 434 46.1
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 2.1e-60 237.3 425 44.9
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 2.1e-60 237.3 342 48.8
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 2.7e-60 236.9 432 45.8
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 6.0e-60 235.7 336 47.3
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 1.7e-59 234.2 384 49.7
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 3.9e-59 233.0 331 48.9
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 1.1e-58 231.5 391 48.3
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 3.3e-58 229.9 332 51.2
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 2.1e-57 227.3 398 46.0
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 4.7e-57 226.1 389 47.3
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 6.2e-57 225.7 251 57.0
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 1.1e-56 224.9 323 48.0
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 5.2e-56 222.6 340 49.7
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 6.8e-56 222.2 442 40.5
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 8.9e-56 221.9 417 46.5
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 3.4e-55 219.9 434 41.7
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 1.3e-54 218.0 396 43.7
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 2.2e-54 217.2 252 54.4
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 2.2e-54 217.2 409 44.5
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 2.9e-54 216.9 350 44.6
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 4.9e-54 216.1 219 61.2
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 6.4e-54 215.7 380 46.8
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 6.4e-54 215.7 377 46.4
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 7.1e-53 212.2 387 45.0
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 2.3e-51 207.2 393 39.7
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 3.0e-51 206.8 389 44.2
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 3.0e-51 206.8 387 43.9
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 1.9e-50 204.1 325 42.8
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 1.9e-50 204.1 525 39.8
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 3.3e-50 203.4 401 44.4
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 3.3e-50 203.4 390 44.6
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 9.5e-50 201.8 370 40.8
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 1.2e-49 201.4 263 48.3
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 2.1e-49 200.7 407 42.3
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 8.1e-49 198.7 432 38.9
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 1.8e-48 197.6 281 48.8
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 1.8e-48 197.6 402 44.3
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 5.2e-48 196.1 390 42.3
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 6.8e-48 195.7 342 43.3
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 2.0e-47 194.1 387 42.9
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 1.3e-46 191.4 370 44.6
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 1.3e-46 191.4 395 43.3
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 1.3e-46 191.4 235 53.2
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 1.1e-45 188.3 238 52.9
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 6.6e-43 179.1 386 41.5
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 6.6e-43 179.1 331 47.4
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 8.7e-43 178.7 368 41.6
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 1.2e-41 174.9 274 46.4
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 2.8e-41 173.7 386 42.7
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 4.7e-41 172.9 388 42.0
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 1.4e-40 171.4 242 49.6
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 1.8e-40 171.0 401 41.1
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 1.9e-37 161.0 400 40.5
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 5.4e-37 159.5 366 39.9
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 1.2e-36 158.3 265 44.2
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 1.7e-35 154.5 277 39.4
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 6.2e-33 146.0 226 43.8
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 6.2e-33 146.0 111 75.7
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 8.1e-33 145.6 358 38.0
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 1.4e-32 144.8 231 44.2
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.5e-31 139.8 152 57.9
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 1.3e-27 128.3 306 35.3
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 3.9e-27 126.7 239 41.4
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 4.5e-23 113.2 264 37.1
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 7.4e-18 95.9 166 45.2
FAN07G1886 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.6e-17 94.7 74 75.7
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 4.8e-17 93.2 142 47.2
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 2.7e-12 77.4 79 60.8
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 4.6e-12 76.6 88 50.0
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 7.4e-10 69.3 108 45.4
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 6.9e-08 62.8 140 33.6
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 3.4e-07 60.5 67 50.7
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 1.7e-06 58.2 196 29.6
CDE10G1193 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 5.0e-06 56.6 76 52.6


User provided reference genes

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