Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 7.8e-13 75.9 39 100.0
FAN04G0390 Fragaria x ananassa HOM05D003193 ORTHO05D204812 7.8e-13 75.9 39 100.0
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 7.8e-13 75.9 39 100.0
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 7.8e-13 75.9 39 100.0
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 7.8e-13 75.9 39 100.0
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 7.8e-13 75.9 39 100.0
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 3.9e-12 73.6 39 97.4
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 6.2e-10 66.2 39 87.2
FAN27G0630 Fragaria x ananassa HOM05D003193 ORTHO05D200340 6.9e-09 62.8 62 62.9
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 4.4e-08 60.1 39 76.9
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 9.9e-08 58.9 39 82.1
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 9.9e-08 58.9 39 82.1
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 2.9e-07 57.4 39 79.5
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 3.8e-07 57.0 38 73.7
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 3.8e-07 57.0 38 73.7
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 3.8e-07 57.0 40 72.5
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 3.8e-07 57.0 39 79.5
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 3.8e-07 57.0 39 79.5
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 4.9e-07 56.6 40 72.5
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 4.9e-07 56.6 39 79.5
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 4.9e-07 56.6 39 76.9
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 4.9e-07 56.6 39 79.5
SalBow1G0653 Salvia bowleyana HOM05D003193 ORTHO05D004924 6.4e-07 56.2 39 71.8
SalBow1G3637 Salvia bowleyana HOM05D003193 ORTHO05D004924 6.4e-07 56.2 39 71.8
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 1.1e-06 55.5 38 71.1
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 1.1e-06 55.5 39 79.5
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 1.1e-06 55.5 39 79.5
Actinidia03821 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.4e-06 55.1 39 76.9
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 1.4e-06 55.1 36 72.2
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 1.4e-06 55.1 33 75.8
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 1.4e-06 55.1 39 79.5
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 2.4e-06 54.3 39 76.9
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 3.2e-06 53.9 39 74.4
Nitab4.5_0000841g0120 Nicotiana tabacum HOM05D003193 ORTHO05D004924 3.2e-06 53.9 39 71.8
Nitab4.5_0018351g0010 Nicotiana tabacum HOM05D003193 ORTHO05D023334 3.2e-06 53.9 39 71.8
TAR636G2059 Trochodendron aralioides HOM05D003193 ORTHO05D004924 3.2e-06 53.9 39 79.5
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 4.2e-06 53.5 37 70.3
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 4.2e-06 53.5 37 70.3
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 4.2e-06 53.5 38 73.7
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 4.2e-06 53.5 33 75.8
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 4.2e-06 53.5 39 74.4
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 4.2e-06 53.5 39 74.4
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 4.2e-06 53.5 39 74.4
Solyc04g050510.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 4.2e-06 53.5 36 75.0
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 4.2e-06 53.5 36 75.0
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 5.4e-06 53.1 39 71.8
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 5.4e-06 53.1 39 76.9
CAN.G131.16 Capsicum annuum HOM05D003193 ORTHO05D004924 7.1e-06 52.8 36 75.0
CARHR056140 Cardamine hirsuta HOM05D003193 ORTHO05D004924 7.1e-06 52.8 39 74.4
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 7.1e-06 52.8 39 76.9
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 7.1e-06 52.8 37 78.4
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 7.1e-06 52.8 39 71.8
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 7.1e-06 52.8 36 69.4
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 9.3e-06 52.4 39 71.8
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 9.3e-06 52.4 39 74.4


User provided reference genes

Program Settings