Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0362 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-106 389.8 229 100.0
FAN18G3590 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.8e-64 250.0 136 92.6
FAN18G3729 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.4e-55 218.8 322 46.3
FAN08G3046 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.0e-51 205.3 307 44.0
FAN18G3851 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.3e-46 188.0 143 68.5
FvH4_5g35330 Fragaria vesca HOM05D002804 ORTHO05D003755 9.2e-45 184.5 100 90.0
FvH4_5g35070 Fragaria vesca HOM05D002804 ORTHO05D029636 7.3e-42 174.9 175 53.7
FAN18G4091 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.8e-40 170.2 116 73.3
FvH4_5g35080 Fragaria vesca HOM05D002804 ORTHO05D003755 1.4e-37 160.6 142 61.3
FvH4_5g35322 Fragaria vesca HOM05D002804 ORTHO05D003755 2.4e-37 159.8 271 40.6
FAN18G3114 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.6e-34 148.7 97 73.2
RcHm_v2.0_Chr0c11g0499511 Rosa chinensis HOM05D002804 ORTHO05D003755 2.3e-32 143.3 133 55.6
FAN18G3080 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.0e-32 142.5 136 57.4
RcHm_v2.0_Chr7g0236021 Rosa chinensis HOM05D002804 ORTHO05D003755 1.2e-31 141.0 135 55.6
RcHm_v2.0_Chr0c11g0499411 Rosa chinensis HOM05D002804 ORTHO05D003755 3.4e-31 139.4 131 56.5
RcHm_v2.0_Chr0c11g0499481 Rosa chinensis HOM05D002804 ORTHO05D003755 7.5e-31 138.3 139 53.2
RcHm_v2.0_Chr7g0236241 Rosa chinensis HOM05D002804 ORTHO05D003755 7.5e-31 138.3 139 53.2
FAN13G2866 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.8e-31 137.9 136 55.9
RcHm_v2.0_Chr0c11g0499321 Rosa chinensis HOM05D002804 ORTHO05D029636 9.8e-31 137.9 100 70.0
RcHm_v2.0_Chr7g0236101 Rosa chinensis HOM05D002804 ORTHO05D029636 9.8e-31 137.9 100 70.0
RcHm_v2.0_Chr7g0236191 Rosa chinensis HOM05D002804 ORTHO05D022637 2.9e-30 136.3 177 45.8
RcHm_v2.0_Chr0c11g0499461 Rosa chinensis HOM05D002804 ORTHO05D003755 3.7e-30 136.0 177 45.8
RcHm_v2.0_Chr7g0236031 Rosa chinensis HOM05D002804 ORTHO05D003755 3.7e-30 136.0 135 54.1
RcHm_v2.0_Chr7g0235901 Rosa chinensis HOM05D002804 ORTHO05D003755 4.9e-30 135.6 135 54.1
FvH4_5g35320 Fragaria vesca HOM05D002804 ORTHO05D003755 6.4e-30 135.2 85 75.3
RcHm_v2.0_Chr7g0235871 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-29 134.4 142 53.5
RcHm_v2.0_Chr7g0235921 Rosa chinensis HOM05D002804 ORTHO05D003755 2.4e-29 133.3 135 53.3
FvH4_5g35000 Fragaria vesca HOM05D002804 ORTHO05D003755 4.1e-29 132.5 135 54.8
FAN18G3994 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.2e-29 131.3 135 54.1
FvH4_5g35300 Fragaria vesca HOM05D002804 ORTHO05D003755 1.3e-27 127.5 136 51.5
FvH4_5g35050 Fragaria vesca HOM05D002804 ORTHO05D003755 3.0e-27 126.3 135 51.1
FvH4_5g31080 Fragaria vesca HOM05D002804 ORTHO05D003755 8.6e-27 124.8 177 42.4
FvH4_5g31070 Fragaria vesca HOM05D002804 ORTHO05D003755 1.2e-25 120.9 135 47.4
RcHm_v2.0_Chr7g0235811 Rosa chinensis HOM05D002804 ORTHO05D003755 1.6e-25 120.6 125 48.8
RcHm_v2.0_Chr7g0236051 Rosa chinensis HOM05D002804 ORTHO05D003755 1.6e-25 120.6 138 48.6
RcHm_v2.0_Chr7g0235971 Rosa chinensis HOM05D002804 ORTHO05D003755 2.1e-25 120.2 138 48.6
RcHm_v2.0_Chr1g0342791 Rosa chinensis HOM05D002804 ORTHO05D003755 2.8e-25 119.8 134 47.8
RcHm_v2.0_Chr0c11g0499401 Rosa chinensis HOM05D002804 ORTHO05D022637 4.7e-25 119.0 122 54.9
FAN08G1393 Fragaria x ananassa HOM05D002804 ORTHO05D029665 6.2e-25 118.6 130 51.5
FvH4_5g34950 Fragaria vesca HOM05D002804 ORTHO05D003755 8.1e-25 118.2 124 49.2
FAN13G2413 Fragaria x ananassa HOM05D002804 ORTHO05D022637 1.2e-23 114.4 146 47.3
RcHm_v2.0_Chr7g0236631 Rosa chinensis HOM05D002804 ORTHO05D029636 2.0e-23 113.6 97 59.8
FAN18G1408 Fragaria x ananassa HOM05D002804 ORTHO05D022637 3.4e-23 112.8 124 50.0
RcHm_v2.0_Chr7g0236071 Rosa chinensis HOM05D002804 ORTHO05D003755 3.4e-23 112.8 117 52.1
RcHm_v2.0_Chr7g0218381 Rosa chinensis HOM05D002804 ORTHO05D003755 4.4e-23 112.5 130 47.7
RcHm_v2.0_Chr7g0235851 Rosa chinensis HOM05D002804 ORTHO05D003755 5.8e-23 112.1 105 54.3
FvH4_5g35254 Fragaria vesca HOM05D002804 ORTHO05D022637 7.6e-23 111.7 124 50.0
FAN04G2366 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.6e-23 111.7 133 48.9
RcHm_v2.0_Chr7g0235991 Rosa chinensis HOM05D002804 ORTHO05D003755 9.9e-23 111.3 108 51.9
RcHm_v2.0_Chr7g0236331 Rosa chinensis HOM05D002804 ORTHO05D003755 3.7e-22 109.4 176 38.6
FvH4_5g32080 Fragaria vesca HOM05D002804 ORTHO05D029665 2.4e-21 106.7 115 53.9
FvH4_5g05670 Fragaria vesca HOM05D002804 ORTHO05D003755 4.6e-20 102.4 186 37.1
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-19 100.5 186 36.6
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-19 100.5 186 36.6
RcHm_v2.0_Chr7g0236591 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-19 100.5 135 46.7
RcHm_v2.0_Chr7g0218341 Rosa chinensis HOM05D002804 ORTHO05D003755 5.1e-19 99.0 178 37.6
FvH4_5g35060 Fragaria vesca HOM05D002804 ORTHO05D003755 6.6e-19 98.6 129 45.0
RcHm_v2.0_Chr7g0236171 Rosa chinensis HOM05D002804 ORTHO05D003755 3.3e-18 96.3 185 36.8
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 7.3e-18 95.1 132 40.2
FAN04G1488 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.6e-17 94.0 123 43.9
FAN03G3123 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.1e-17 93.6 127 44.9
FAN08G1215 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.1e-17 93.6 123 43.9
FAN14G5607 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.1e-17 93.6 132 42.4
FvH4_6g08870 Fragaria vesca HOM05D002804 ORTHO05D003755 3.6e-17 92.8 132 42.4
RcHm_v2.0_Chr0c11g0499501 Rosa chinensis HOM05D002804 ORTHO05D003755 4.7e-17 92.4 91 52.7
RcHm_v2.0_Chr3g0459161 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-16 91.3 132 41.7
FvH4_5g34930 Fragaria vesca HOM05D002804 ORTHO05D025426 1.4e-16 90.9 130 40.8
RcHm_v2.0_Chr4g0420021 Rosa chinensis HOM05D002804 ORTHO05D003755 2.4e-16 90.1 118 44.1
FAN05G2457 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.1e-16 89.7 132 40.9
FAN18G0864 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.9e-16 88.2 137 39.4
FAN02G0182 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-15 87.8 132 40.2
Peaxi162Scf01065g00002 Petunia axillaris HOM05D002804 ORTHO05D003755 1.5e-15 87.4 131 38.9
RcHm_v2.0_Chr7g0230641 Rosa chinensis HOM05D002804 ORTHO05D003755 1.5e-15 87.4 67 62.7
FvH4_7g08991 Fragaria vesca HOM05D002804 ORTHO05D003755 2.6e-15 86.7 185 31.9
FAN06G4842 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.6e-15 86.7 185 31.9
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 2.6e-15 86.7 133 39.1
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 4.4e-15 85.9 123 41.5
RcHm_v2.0_Chr4g0419921 Rosa chinensis HOM05D002804 ORTHO05D003755 5.8e-15 85.5 118 42.4
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 7.6e-15 85.1 126 41.3
Sopen01g044910 Solanum pennellii HOM05D002804 ORTHO05D003755 1.7e-14 84.0 130 38.5
RcHm_v2.0_Chr7g0193131 Rosa chinensis HOM05D002804 ORTHO05D003755 2.2e-14 83.6 142 36.6
MD16G1177800 Malus domestica HOM05D002804 ORTHO05D003755 2.9e-14 83.2 137 35.8
Nitab4.5_0004889g0010 Nicotiana tabacum HOM05D002804 ORTHO05D003755 2.9e-14 83.2 144 38.2
RcHm_v2.0_Chr7g0236231 Rosa chinensis HOM05D002804 ORTHO05D003755 2.9e-14 83.2 80 53.8
Solyc01g102470.2 Solanum lycopersicum HOM05D002804 ORTHO05D003755 2.9e-14 83.2 130 38.5
RcHm_v2.0_Chr0c11g0499471 Rosa chinensis HOM05D002804 ORTHO05D003755 8.4e-14 81.6 178 33.1
RcHm_v2.0_Chr7g0235931 Rosa chinensis HOM05D002804 ORTHO05D003755 8.4e-14 81.6 133 39.1
Dinv30965 Davidia involucrata HOM05D002804 ORTHO05D003755 1.1e-13 81.3 113 41.6
FvH4_5g35253 Fragaria vesca HOM05D002804 ORTHO05D003755 1.1e-13 81.3 179 32.4
FAN04G3225 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-13 81.3 126 40.5
RcHm_v2.0_Chr0c11g0499391 Rosa chinensis HOM05D002804 ORTHO05D003755 1.9e-13 80.5 185 34.1
FvH4_6g08940 Fragaria vesca HOM05D002804 ORTHO05D003755 3.2e-13 79.7 125 37.6
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 4.2e-13 79.3 140 35.7
FAN02G4619 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.2e-13 79.3 125 37.6
FAN25G3079 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.2e-13 79.3 162 33.3
unitig_22.g5757 Utricularia gibba HOM05D002804 ORTHO05D003755 4.2e-13 79.3 108 39.8
FAN08G2676 Fragaria x ananassa HOM05D002804 ORTHO05D025426 5.4e-13 79.0 179 34.1
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.4e-13 79.0 125 37.6
Nitab4.5_0004090g0070 Nicotiana tabacum HOM05D002804 ORTHO05D003755 9.3e-13 78.2 133 38.3
Zm00001eb429950 Zea mays HOM05D002804 ORTHO05D003755 2.1e-12 77.0 116 40.5
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 3.5e-12 76.3 127 38.6
FvH4_5g31001 Fragaria vesca HOM05D002804 ORTHO05D003755 4.6e-12 75.9 66 54.5
FvH4_5g31150 Fragaria vesca HOM05D002804 ORTHO05D022637 6.0e-12 75.5 91 49.5
FAN05G3459 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.0e-12 75.5 122 36.9
RcHm_v2.0_Chr3g0459181 Rosa chinensis HOM05D002804 ORTHO05D003755 6.0e-12 75.5 127 35.4
RcHm_v2.0_Chr7g0235941 Rosa chinensis HOM05D002804 ORTHO05D003755 1.0e-11 74.7 184 32.1
Lj5A312T57 Lonicera japonica HOM05D002804 ORTHO05D003755 1.3e-11 74.3 113 36.3
FAN13G1594 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-11 73.9 130 36.2
Psat6g157320 Pisum sativum HOM05D002804 ORTHO05D003755 1.7e-11 73.9 127 37.0
FAN12G4232 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.3e-11 73.6 134 35.8
FAN18G0121 Fragaria x ananassa HOM05D002804 ORTHO05D029665 2.3e-11 73.6 130 37.7
Sc14g0008950 Simmondsia chinensis HOM05D002804 ORTHO05D003755 2.3e-11 73.6 165 33.3
FvH4_4g16590 Fragaria vesca HOM05D002804 ORTHO05D003755 3.0e-11 73.2 134 35.8
FAN04G3233 Fragaria x ananassa HOM05D002804 ORTHO05D025426 3.0e-11 73.2 130 36.9
FAN08G1735 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.0e-11 73.2 162 33.3
FAN10G1025 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.9e-11 72.8 119 41.2
FvH4_7g08990 Fragaria vesca HOM05D002804 ORTHO05D003755 5.1e-11 72.4 119 40.3
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 6.6e-11 72.0 125 36.0
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 1.1e-10 71.2 132 32.6
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 1.1e-10 71.2 127 36.2
QL03p011442 Quercus lobata HOM05D002804 ORTHO05D003755 1.1e-10 71.2 118 36.4
RcHm_v2.0_Chr7g0236201 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-10 71.2 134 35.1
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 1.1e-10 71.2 132 33.3
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.5e-10 70.9 140 32.9
FAN08G3255 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-10 70.9 162 31.5
FvH4_5g05700 Fragaria vesca HOM05D002804 ORTHO05D003755 1.9e-10 70.5 123 39.8
DCAR_003256 Daucus carota HOM05D002804 ORTHO05D003755 3.3e-10 69.7 166 28.3
FvH4_5g34900 Fragaria vesca HOM05D002804 ORTHO05D025426 3.3e-10 69.7 177 32.2
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 3.3e-10 69.7 127 35.4
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.3e-10 68.6 132 34.1
FAN13G1711 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.3e-10 68.6 185 29.2
RcHm_v2.0_Chr7g0218371 Rosa chinensis HOM05D002804 ORTHO05D003755 7.3e-10 68.6 178 29.8
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 7.3e-10 68.6 127 35.4
FAN10G1430 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.6e-10 68.2 185 28.6
FAN18G4551 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.6e-10 68.2 162 32.7
FAN10G1692 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-09 67.8 185 28.6
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 1.3e-09 67.8 140 32.1
Ca_10220_v3 Cicer arietinum L. HOM05D002804 ORTHO05D003755 2.1e-09 67.0 127 33.9
FAN08G0149 Fragaria x ananassa HOM05D002804 ORTHO05D029665 2.1e-09 67.0 68 54.4
FAN18G1608 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.8e-09 66.6 176 30.7
FAN03G0147 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.8e-09 65.9 130 34.6
RcHm_v2.0_Chr7g0235981 Rosa chinensis HOM05D002804 ORTHO05D003755 4.8e-09 65.9 175 31.4
MSTRG.5178 Avicennia marina HOM05D002804 ORTHO05D003755 6.2e-09 65.5 113 34.5
BraA03t09504Z Brassica rapa HOM05D007539 ORTHO05D009315 6.2e-09 65.5 105 38.1
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 8.1e-09 65.1 118 34.7
RcHm_v2.0_Chr7g0235841 Rosa chinensis HOM05D002804 ORTHO05D025426 8.1e-09 65.1 179 30.7
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 1.1e-08 64.7 132 33.3
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 1.1e-08 64.7 132 32.6
Sed0019381 Sechium edule HOM05D002804 ORTHO05D003755 1.4e-08 64.3 128 32.8
Atru.chr12.1496 Acer truncatum HOM05D002804 ORTHO05D003755 1.8e-08 63.9 108 37.0
AT5G03560 Arabidopsis thaliana HOM05D002804 ORTHO05D003755 2.4e-08 63.5 118 33.1
FAN18G3459 Fragaria x ananassa HOM05D002804 ORTHO05D210854 9.0e-08 61.6 83 47.0
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 9.0e-08 61.6 80 48.8
RcHm_v2.0_Chr1g0342991 Rosa chinensis HOM05D002804 ORTHO05D003755 9.0e-08 61.6 103 35.9
FvH4_5g32070 Fragaria vesca HOM05D002804 ORTHO05D003755 2.6e-07 60.1 83 43.4
MD16G1193600 Malus domestica HOM05D002804 ORTHO05D003755 2.6e-07 60.1 89 40.4
FAN02G1490 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.8e-07 58.9 86 41.9
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 9.9e-07 58.2 127 33.1
Phvul.007G207300 Phaseolus vulgaris HOM05D002804 ORTHO05D003755 9.9e-07 58.2 118 32.2
RcHm_v2.0_Chr3g0459201 Rosa chinensis HOM05D002804 ORTHO05D003755 9.9e-07 58.2 74 40.5
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 9.9e-07 58.2 77 39.0
Thecc.08G200300 Theobroma cacao HOM05D002804 ORTHO05D003755 1.3e-06 57.8 113 34.5
FAN02G1170 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-06 57.4 118 33.9
AUR62024179 Chenopodium quinoa HOM05D002804 ORTHO05D003755 2.2e-06 57.0 70 40.0
RcHm_v2.0_Chr7g0236221 Rosa chinensis HOM05D002804 ORTHO05D341151 2.9e-06 56.6 49 59.2
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 4.9e-06 55.8 67 46.3
RcHm_v2.0_Chr0c11g0499521 Rosa chinensis HOM05D002804 ORTHO05D003755 4.9e-06 55.8 67 43.3
RcHm_v2.0_Chr3g0459171 Rosa chinensis HOM05D002804 ORTHO05D003755 4.9e-06 55.8 89 41.6
Oeu029180.1 Olea europaea HOM05D002804 ORTHO05D003755 8.4e-06 55.1 50 54.0
RcHm_v2.0_Chr3g0459101 Rosa chinensis HOM05D018614 ORTHO05D035385 8.4e-06 55.1 110 30.9


User provided reference genes

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