Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0338 Fragaria x ananassa HOM05D004529 ORTHO05D005884 5.6e-220 767.3 390 100.0
FAN13G2071 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.5e-180 636.3 549 66.8
FvH4_5g18430 Fragaria vesca HOM05D004529 ORTHO05D005884 2.0e-177 625.9 554 65.3
FAN08G1550 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.4e-173 613.2 554 64.4
FAN18G1654 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.0e-128 464.2 385 67.3
RcHm_v2.0_Chr7g0177041 Rosa chinensis HOM05D004529 ORTHO05D005884 6.4e-107 391.7 623 44.0
Prupe.5G240600 Prunus persica HOM05D004529 ORTHO05D005884 3.5e-52 209.9 284 47.2
MD14G1242900 Malus domestica HOM05D004529 ORTHO05D005884 6.5e-51 205.7 305 45.2
FAN04G1556 Fragaria x ananassa HOM05D004529 ORTHO05D005884 2.5e-50 203.8 299 45.5
RcHm_v2.0_Chr7g0177561 Rosa chinensis HOM05D004529 ORTHO05D005884 7.2e-50 202.2 299 44.8
FAN08G2030 Fragaria x ananassa HOM05D004529 ORTHO05D005884 3.6e-49 199.9 299 43.1
MD06G1235900 Malus domestica HOM05D004529 ORTHO05D005884 1.8e-48 197.6 282 45.7
FAN13G3043 Fragaria x ananassa HOM05D004529 ORTHO05D005884 5.2e-48 196.1 299 42.8
Atru.chr9.71 Acer truncatum HOM05D004529 ORTHO05D005884 2.4e-45 187.2 277 42.6
FvH4_5g18040 Fragaria vesca HOM05D004529 ORTHO05D005884 4.1e-45 186.4 408 35.5
FAN18G3802 Fragaria x ananassa HOM05D004529 ORTHO05D005884 7.0e-45 185.7 408 35.3
QL10p034152 Quercus lobata HOM05D004529 ORTHO05D005884 4.5e-44 183.0 413 35.8
Actinidia34683 Actinidia chinensis HOM05D004529 ORTHO05D005884 1.6e-41 174.5 292 39.7
CANSAT64G3027 Cannabis sativa HOM05D004529 ORTHO05D005884 1.6e-41 174.5 450 32.9
Ca_27163_v3 Cicer arietinum L. HOM05D004529 ORTHO05D005884 8.9e-40 168.7 236 43.6
Haze_18337 Corylus avellana HOM05D004529 ORTHO05D005884 1.5e-39 167.9 385 34.5
CSS0033935 Camellia sinensis var. sinensis HOM05D004529 ORTHO05D005884 4.4e-39 166.4 286 38.8
Duzib128G0682 Durio zibethinus HOM05D004529 ORTHO05D005884 6.4e-38 162.5 296 38.2
Medtr6g077930 Medicago truncatula HOM05D004529 ORTHO05D005884 6.4e-38 162.5 272 39.7
arahy.Tifrunner.gnm1.ann1.FEKM9F Arachis hypogaea HOM05D004529 ORTHO05D005884 1.8e-37 161.0 224 43.8
vmacro17741 Vaccinium macrocarpon HOM05D004529 ORTHO05D005884 1.8e-37 161.0 289 38.4
Sabra17G0125600 Salix brachista HOM05D004529 ORTHO05D005884 2.4e-37 160.6 271 39.1
Potri.017G152601 Populus trichocarpa HOM05D004529 ORTHO05D005884 3.2e-37 160.2 345 34.5
Rhsim08G0124700 Rhododendron simsii HOM05D004529 ORTHO05D005884 3.2e-37 160.2 289 38.4
Glyma.09G164300 Glycine max HOM05D004529 ORTHO05D005884 4.1e-37 159.8 360 34.4
Phvul.004G138850 Phaseolus vulgaris HOM05D004529 ORTHO05D005884 5.4e-37 159.5 355 33.2
Phvul.L001671 Phaseolus vulgaris HOM05D004529 ORTHO05D005884 5.4e-37 159.5 355 33.2
TWI81G0141 Tripterygium wilfordii HOM05D004529 ORTHO05D005884 5.4e-37 159.5 292 37.7
arahy.Tifrunner.gnm1.ann1.1UV8VN Arachis hypogaea HOM05D004529 ORTHO05D005884 7.0e-37 159.1 224 42.9
Potri.004G068700 Populus trichocarpa HOM05D004529 ORTHO05D005884 9.2e-37 158.7 334 34.1
Glyma.16G212800 Glycine max HOM05D004529 ORTHO05D005884 2.0e-36 157.5 360 34.4
TAR629G0199 Trochodendron aralioides HOM05D004529 ORTHO05D005884 2.0e-36 157.5 297 37.0
TAR629G2105 Trochodendron aralioides HOM05D004529 ORTHO05D005884 2.0e-36 157.5 297 37.0
VMungo0464G1978 Vigna mungo HOM05D004529 ORTHO05D005884 2.7e-36 157.1 281 37.7
Duzib177G0816 Durio zibethinus HOM05D004529 ORTHO05D005884 5.9e-36 156.0 292 36.6
Gohir.D13G158400 Gossypium hirsutum HOM05D004529 ORTHO05D005884 1.0e-35 155.2 224 41.1
Gorai.013G179100 Gossypium raimondii HOM05D004529 ORTHO05D005884 1.0e-35 155.2 224 41.1
Lj5A167G40 Lonicera japonica HOM05D004529 ORTHO05D005884 1.0e-35 155.2 250 38.0
Thecc.05G197800 Theobroma cacao HOM05D004529 ORTHO05D005884 1.0e-35 155.2 296 37.8
Dinv11730 Davidia involucrata HOM05D004529 ORTHO05D005884 3.0e-35 153.7 300 36.7
Psat0s1805g0040 Pisum sativum HOM05D004529 ORTHO05D005884 3.9e-35 153.3 226 42.5
Lalb_Chr14g0370211 Lupinus albus HOM05D004529 ORTHO05D005884 5.0e-35 152.9 281 39.1
PGR083G0180 Punica granatum HOM05D004529 ORTHO05D005884 5.0e-35 152.9 238 40.3
VMungo0464G0747 Vigna mungo HOM05D004529 ORTHO05D005884 5.0e-35 152.9 277 38.6
Sabra04G0046400 Salix brachista HOM05D004529 ORTHO05D005884 6.6e-35 152.5 326 34.0
Lalb_Chr22g0354001 Lupinus albus HOM05D004529 ORTHO05D005884 8.6e-35 152.1 430 32.3
Gohir.A13G153800 Gossypium hirsutum HOM05D004529 ORTHO05D005884 2.5e-34 150.6 224 39.3
COL.COLO4_08720 Corchorus olitorius HOM05D004529 ORTHO05D005884 3.3e-34 150.2 293 36.2
Dinv06405 Davidia involucrata HOM05D004529 ORTHO05D005884 3.3e-34 150.2 289 36.7
GSVIVG01024252001 Vitis vinifera HOM05D004529 ORTHO05D005884 3.3e-34 150.2 333 32.7
Eucgr.H00653 Eucalyptus grandis HOM05D004529 ORTHO05D005884 4.3e-34 149.8 273 36.6
Ciclev10018551m.g Citrus clementina HOM05D004529 ORTHO05D005884 9.5e-34 148.7 358 33.8
Sed0013312 Sechium edule HOM05D004529 ORTHO05D005884 2.8e-33 147.1 269 35.3
MBI03_g26653_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 2.3e-32 144.1 277 33.9
CsaV3_1G007540 Cucumis sativus L. HOM05D004529 ORTHO05D005884 4.0e-32 143.3 261 36.4
Lj2g0011080 Lotus japonicus HOM05D004529 ORTHO05D005884 5.2e-32 142.9 387 31.8
CAN.G929.20 Capsicum annuum HOM05D004529 ORTHO05D005884 2.6e-31 140.6 291 34.4
MBI02_g39755_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 4.4e-31 139.8 253 35.6
Nitab4.5_0003040g0050 Nicotiana tabacum HOM05D004529 ORTHO05D005884 5.8e-31 139.4 300 32.7
Cpa.g.sc168.9 Carica papaya HOM05D004529 ORTHO05D005884 9.8e-31 138.7 366 30.1
Lalb_Chr24g0398601 Lupinus albus HOM05D004529 ORTHO05D005884 1.7e-30 137.9 452 30.8
Gohir.A13G089790 Gossypium hirsutum HOM05D004529 ORTHO05D005884 6.4e-30 136.0 264 34.5
PGSC0003DMG400010150 Solanum tuberosum HOM05D004529 ORTHO05D005884 8.3e-30 135.6 283 33.6
Solyc03g098630.4 Solanum lycopersicum HOM05D004529 ORTHO05D005884 1.9e-29 134.4 283 32.5
ClCG01G014790 Citrullus lanatus HOM05D004529 ORTHO05D005884 9.2e-29 132.1 279 33.3
GSVIVG01029323001 Vitis vinifera HOM05D004529 ORTHO05D005884 1.6e-28 131.3 203 41.9
Sopen03g029340 Solanum pennellii HOM05D004529 ORTHO05D005884 4.6e-28 129.8 283 31.8
TPR.G19877 Trifolium pratense HOM05D004529 ORTHO05D005884 4.6e-28 129.8 266 36.1
Nitab4.5_0000033g0370 Nicotiana tabacum HOM05D004529 ORTHO05D005884 5.0e-27 126.3 297 33.0
Prupe.3G227600 Prunus persica HOM05D004529 ORTHO05D005884 6.6e-27 125.9 271 29.5
MD17G1087100 Malus domestica HOM05D004529 ORTHO05D005884 1.5e-26 124.8 257 33.1
CDE05G3012 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 1.9e-26 124.4 264 33.3
DCAR_011683 Daucus carota HOM05D004529 ORTHO05D005884 2.5e-26 124.0 261 33.0
Lj9P411T44 Lonicera japonica HOM05D004529 ORTHO05D005884 2.8e-25 120.6 237 38.0
ATR0618G236 Amborella trichopoda HOM05D004529 ORTHO05D005884 3.6e-25 120.2 360 29.2
MBI06_g11152_MAGBIO Magnolia biondii HOM05D004529 ORTHO05D005884 4.7e-25 119.8 274 33.6
TAR627G0950 Trochodendron aralioides HOM05D004529 ORTHO05D005884 4.7e-25 119.8 272 30.9
PSO541G4256 Papaver somniferum HOM05D004529 ORTHO05D005884 6.2e-25 119.4 254 32.3
PSO675G1505 Papaver somniferum HOM05D004529 ORTHO05D005884 1.8e-24 117.9 254 31.9
TAR371G0876 Trochodendron aralioides HOM05D004529 ORTHO05D005884 8.9e-24 115.5 277 33.2
Cfa014498 Carpinus fangiana HOM05D004529 ORTHO05D005884 3.4e-23 113.6 305 29.8
Cfa014497 Carpinus fangiana HOM05D004529 ORTHO05D005884 4.4e-23 113.2 305 30.2
Peaxi162Scf00171g00234 Petunia axillaris HOM05D004529 ORTHO05D005884 5.8e-23 112.8 298 30.9
CDE08G0908 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 2.2e-22 110.9 211 37.4
Gohir.D13G093200 Gossypium hirsutum HOM05D004529 ORTHO05D005884 2.2e-22 110.9 251 34.7
FAN09G3058 Fragaria x ananassa HOM05D004529 ORTHO05D005884 2.9e-22 110.5 267 33.0
CAN.G65.75 Capsicum annuum HOM05D004529 ORTHO05D005884 3.7e-22 110.2 260 34.2
FAN05G1920 Fragaria x ananassa HOM05D004529 ORTHO05D005884 4.9e-22 109.8 267 33.0
Haze_13045 Corylus avellana HOM05D004529 ORTHO05D005884 6.4e-22 109.4 269 30.1
Sabra19G0119700 Salix brachista HOM05D004529 ORTHO05D005884 1.1e-21 108.6 183 34.4
Os06g0729500 Oryza sativa ssp. japonica HOM05D004529 ORTHO05D005884 1.4e-21 108.2 269 31.2
FAN02G0641 Fragaria x ananassa HOM05D004529 ORTHO05D005884 1.9e-21 107.8 267 33.3
Lj9P233T36 Lonicera japonica HOM05D004529 ORTHO05D005884 2.4e-21 107.5 239 34.7
Sopen06g028600 Solanum pennellii HOM05D004529 ORTHO05D005884 3.2e-21 107.1 251 34.7
FvH4_6g44320 Fragaria vesca HOM05D004529 ORTHO05D005884 4.1e-21 106.7 229 34.5
Sopen06g028620 Solanum pennellii HOM05D004529 ORTHO05D005884 4.1e-21 106.7 248 34.7
FAN14G2835 Fragaria x ananassa HOM05D004529 ORTHO05D005884 7.1e-21 105.9 259 33.2
Sabra19G0119900 Salix brachista HOM05D004529 ORTHO05D005884 1.6e-20 104.8 183 33.9
Sabra19G0134300 Salix brachista HOM05D004529 ORTHO05D005884 2.1e-20 104.4 183 33.3
PSO782G2500 Papaver somniferum HOM05D004529 ORTHO05D005884 3.5e-20 103.6 282 29.4
HPP92_022512 Vanilla planifolia HOM05D004529 ORTHO05D001371 3.5e-20 103.6 413 25.2
PSO063G4972 Papaver somniferum HOM05D004529 ORTHO05D005884 4.6e-20 103.2 281 29.5
Peaxi162Scf00643g00541 Petunia axillaris HOM05D004529 ORTHO05D005884 4.6e-20 103.2 381 26.2
Potri.019G119100 Populus trichocarpa HOM05D004529 ORTHO05D005884 6.0e-20 102.8 177 36.7
RcHm_v2.0_Chr2g0161201 Rosa chinensis HOM05D004529 ORTHO05D005884 6.0e-20 102.8 268 29.9
Zm00001eb271850 Zea mays HOM05D004529 ORTHO05D005884 6.0e-20 102.8 250 30.8
Sabra19G0134100 Salix brachista HOM05D004529 ORTHO05D005884 7.8e-20 102.4 177 33.9
MELO3C002172.2 Cucumis melo HOM05D004529 ORTHO05D005884 1.7e-19 101.3 228 33.3
Potri.013G149400 Populus trichocarpa HOM05D004529 ORTHO05D005884 5.1e-19 99.8 209 34.9
Hund01213 Selenicereus undatus HOM05D004529 ORTHO05D005884 6.6e-19 99.4 253 30.4
RcHm_v2.0_Chr1g0318131 Rosa chinensis HOM05D004529 ORTHO05D005884 8.6e-19 99.0 136 45.6
Nitab4.5_0000782g0040 Nicotiana tabacum HOM05D004529 ORTHO05D005884 5.6e-18 96.3 244 30.3
Zm00001eb198730 Zea mays HOM05D004529 ORTHO05D005884 5.6e-18 96.3 239 29.7
Atru.chr6.3093 Acer truncatum HOM05D004529 ORTHO05D005884 7.3e-18 95.9 260 30.8
Dinv02572 Davidia involucrata HOM05D004529 ORTHO05D005884 9.5e-18 95.5 180 33.9
PGSC0003DMG400045819 Solanum tuberosum HOM05D004529 ORTHO05D005884 2.8e-17 94.0 204 34.8
Thecc.02G167600 Theobroma cacao HOM05D004529 ORTHO05D005884 4.7e-17 93.2 260 28.8
Nitab4.5_0000339g0110 Nicotiana tabacum HOM05D004529 ORTHO05D005884 2.3e-16 90.9 260 30.8
Dinv02574 Davidia involucrata HOM05D004529 ORTHO05D005884 2.6e-15 87.4 276 28.3
Zm00001eb261400 Zea mays HOM05D004529 ORTHO05D005884 5.8e-15 86.3 193 31.1
Mapoly0005s0070 Marchantia polymorpha HOM05D004529 ORTHO05D000444 1.4e-13 81.6 181 32.0
Cpa.g.sc34.58 Carica papaya HOM05D004529 ORTHO05D005884 2.4e-13 80.9 217 31.8
Ciclev10018263m.g Citrus clementina HOM05D004529 ORTHO05D005884 5.4e-13 79.7 246 28.5
Cpa.g.sc34.61 Carica papaya HOM05D040545 ORTHO05D005884 1.6e-12 78.2 189 33.3
Phvul.004G138800 Phaseolus vulgaris HOM05D004529 ORTHO05D005884 2.3e-11 74.3 202 29.7
Sc21g0002170 Simmondsia chinensis HOM05D004529 ORTHO05D005884 6.6e-11 72.8 207 30.0
CDE02G2928 Ceratophyllum demersum HOM05D004529 ORTHO05D005884 8.6e-11 72.4 189 29.6
SMO358G0009 Selaginella moellendorffii HOM05D004529 ORTHO05D005884 3.3e-10 70.5 109 37.6
GSVIVG01000446001 Vitis vinifera HOM05D004529 ORTHO05D005884 3.3e-10 70.5 62 50.0
RcHm_v2.0_Chr1g0318141 Rosa chinensis HOM05D004529 ORTHO05D005884 4.4e-07 60.1 36 75.0
Psat6g163520 Pisum sativum HOM05D000608 ORTHO05D000444 2.2e-06 57.8 123 28.5
Ca_29867_v3 Cicer arietinum L. HOM05D000608 ORTHO05D000444 3.8e-06 57.0 240 27.5


User provided reference genes

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