Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0318 Fragaria x ananassa HOM05D000076 ORTHO05D015584 3.1e-78 295.0 146 100.0
FvH4_5g36600 Fragaria vesca HOM05D000076 ORTHO05D002730 2.2e-68 262.3 134 97.0
FAN18G1411 Fragaria x ananassa HOM05D000076 ORTHO05D002730 2.2e-68 262.3 134 97.0
FAN08G3484 Fragaria x ananassa HOM05D000076 ORTHO05D002730 9.3e-67 256.9 137 94.9
FAN13G3047 Fragaria x ananassa HOM05D000076 ORTHO05D002730 6.9e-62 240.7 134 91.0
RcHm_v2.0_Chr7g0242381 Rosa chinensis HOM05D000076 ORTHO05D002730 1.7e-60 236.1 136 89.0
Prupe.1G522600 Prunus persica HOM05D000076 ORTHO05D002730 1.1e-51 206.8 143 77.6
MD08G1188100 Malus domestica HOM05D000076 ORTHO05D002730 1.0e-44 183.7 145 70.3
MD15G1374100 Malus domestica HOM05D000076 ORTHO05D002730 4.9e-44 181.4 145 70.3
Ciclev10000706m.g Citrus clementina HOM05D000076 ORTHO05D002730 3.2e-43 178.7 150 64.7
CANSAT25G1638 Cannabis sativa HOM05D000076 ORTHO05D002730 3.5e-42 175.3 143 68.5
TAR625G0394 Trochodendron aralioides HOM05D000076 ORTHO05D002730 4.3e-40 168.3 143 62.9
GSVIVG01009080001 Vitis vinifera HOM05D000076 ORTHO05D002730 7.4e-40 167.5 143 65.0
PGR042G0574 Punica granatum HOM05D000076 ORTHO05D002730 2.8e-39 165.6 143 58.7
Sed0019731 Sechium edule HOM05D000076 ORTHO05D002730 4.8e-39 164.9 135 65.2
FAN15G1409 Fragaria x ananassa HOM05D000076 ORTHO05D015584 1.1e-38 163.7 81 92.6
Cfa017890 Carpinus fangiana HOM05D000076 ORTHO05D002730 2.4e-38 162.5 142 64.1
Gorai.010G038100 Gossypium raimondii HOM05D000076 ORTHO05D002730 3.1e-38 162.2 143 61.5
Atru.chr13.1120 Acer truncatum HOM05D000076 ORTHO05D002730 4.1e-38 161.8 143 62.9
Gohir.A06G033700 Gossypium hirsutum HOM05D000076 ORTHO05D002730 4.1e-38 161.8 153 56.9
Haze_18275 Corylus avellana HOM05D000076 ORTHO05D002730 6.9e-38 161.0 133 64.7
Gohir.D06G034600 Gossypium hirsutum HOM05D000076 ORTHO05D002730 6.9e-38 161.0 142 61.3
CsaV3_2G029870 Cucumis sativus L. HOM05D000076 ORTHO05D002730 1.5e-37 159.8 135 63.7
Haze_18271 Corylus avellana HOM05D000076 ORTHO05D002730 2.6e-37 159.1 133 64.7
Duzib041G0195 Durio zibethinus HOM05D000076 ORTHO05D002730 3.4e-37 158.7 155 56.8
CiPaw.15G046200 Carya illinoinensis HOM05D000076 ORTHO05D002730 2.9e-36 155.6 134 62.7
Thecc.08G102600 Theobroma cacao HOM05D000076 ORTHO05D002730 2.9e-36 155.6 155 56.1
DCAR_012885 Daucus carota HOM05D000076 ORTHO05D002730 3.8e-36 155.2 143 59.4
Manes.02G149400 Manihot esculenta HOM05D000076 ORTHO05D002730 3.2e-35 152.1 148 54.1
CiPaw.16G033100 Carya illinoinensis HOM05D000076 ORTHO05D002730 4.2e-35 151.8 144 59.0
Duzib093G1793 Durio zibethinus HOM05D000076 ORTHO05D002730 4.2e-35 151.8 155 55.5
ClCG08G011300 Citrullus lanatus HOM05D000076 ORTHO05D002730 5.5e-35 151.4 144 59.0
Nn5g30006 Nelumbo nucifera HOM05D000076 ORTHO05D002730 7.2e-35 151.0 140 60.7
Manes.18G064150 Manihot esculenta HOM05D000076 ORTHO05D002730 3.6e-34 148.7 141 56.0
Actinidia10344 Actinidia chinensis HOM05D000076 ORTHO05D002730 1.4e-33 146.7 131 58.8
Nitab4.5_0010488g0050 Nicotiana tabacum HOM05D000076 ORTHO05D002730 1.4e-33 146.7 143 60.8
Nitab4.5_0000786g0060 Nicotiana tabacum HOM05D000076 ORTHO05D002730 1.5e-32 143.3 143 59.4
Sc01g0000790 Simmondsia chinensis HOM05D000076 ORTHO05D002730 3.3e-32 142.1 143 58.0
HanXRQChr02g0040291 Helianthus annuus HOM05D000076 ORTHO05D002730 5.7e-32 141.4 145 57.2
Lj1g0014604 Lotus japonicus HOM05D000076 ORTHO05D002730 5.7e-32 141.4 139 59.7
Glyma.02G209100 Glycine max HOM05D000076 ORTHO05D002730 9.7e-32 140.6 136 61.0
Nn1g05451 Nelumbo nucifera HOM05D000076 ORTHO05D002730 9.7e-32 140.6 116 62.1
Phvul.008G176800 Phaseolus vulgaris HOM05D000076 ORTHO05D002730 9.7e-32 140.6 136 59.6
Potri.005G161800 Populus trichocarpa HOM05D000076 ORTHO05D002730 3.7e-31 138.7 145 49.7
CAN.G857.12 Capsicum annuum HOM05D000076 ORTHO05D002730 4.8e-31 138.3 143 58.0
PGSC0003DMG400030835 Solanum tuberosum HOM05D000076 ORTHO05D002730 1.1e-30 137.1 143 58.0
HanXRQChr05g0149641 Helianthus annuus HOM05D000076 ORTHO05D002730 1.8e-30 136.3 144 54.9
Lsat_1_v5_gn_1_3200 Lactuca sativa HOM05D000076 ORTHO05D002730 1.8e-30 136.3 144 55.6
Oeu007453.2 Olea europaea HOM05D000076 ORTHO05D002730 1.8e-30 136.3 142 55.6
Solyc04g074670.4 Solanum lycopersicum HOM05D000076 ORTHO05D002730 1.8e-30 136.3 143 57.3
Glyma.14G177300 Glycine max HOM05D000076 ORTHO05D002730 2.4e-30 136.0 134 58.2
PSO541G5458 Papaver somniferum HOM05D000076 ORTHO05D002730 3.1e-30 135.6 142 53.5
vmacro04710 Vaccinium macrocarpon HOM05D000076 ORTHO05D002730 3.1e-30 135.6 142 54.9
CSS0007840 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D002730 4.1e-30 135.2 141 54.6
MBI02_g33227_MAGBIO Magnolia biondii HOM05D000076 ORTHO05D002730 4.1e-30 135.2 141 58.2
Sopen04g029640 Solanum pennellii HOM05D000076 ORTHO05D002730 4.1e-30 135.2 143 57.3
QL02p002473 Quercus lobata HOM05D000076 ORTHO05D002730 9.1e-30 134.0 145 60.0
PSO675G8678 Papaver somniferum HOM05D000076 ORTHO05D002730 1.2e-29 133.7 143 52.4
TPR.G31380 Trifolium pratense HOM05D000076 ORTHO05D002730 1.5e-29 133.3 136 59.6
TAR381G1259 Trochodendron aralioides HOM05D000076 ORTHO05D002730 1.5e-29 133.3 83 75.9
Hma1.2p1_1148F.1_g261610 Hydrangea macrophylla HOM05D000076 ORTHO05D002730 2.0e-29 132.9 141 56.7
Gohir.D05G268000 Gossypium hirsutum HOM05D000076 ORTHO05D002730 3.4e-29 132.1 151 47.7
Sc26g0000190 Simmondsia chinensis HOM05D000076 ORTHO05D002730 3.4e-29 132.1 142 53.5
Lalb_Chr17g0344291 Lupinus albus HOM05D000076 ORTHO05D002730 4.5e-29 131.7 145 58.6
Hund16888 Selenicereus undatus HOM05D000076 ORTHO05D002730 4.5e-29 131.7 143 53.8
AUR62027810 Chenopodium quinoa HOM05D000076 ORTHO05D002730 7.7e-29 131.0 144 52.8
CSS0042131 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D002730 1.0e-28 130.6 144 54.9
EL10Ac1g01149 Beta vulgaris HOM05D000076 ORTHO05D002730 1.3e-28 130.2 142 54.9
ECA247G0965 Erigeron canadensis HOM05D000076 ORTHO05D002730 1.3e-28 130.2 144 53.5
Gorai.009G280200 Gossypium raimondii HOM05D000076 ORTHO05D002730 1.7e-28 129.8 151 47.0
Gohir.A05G265900 Gossypium hirsutum HOM05D000076 ORTHO05D002730 2.2e-28 129.4 151 46.4
Aqoxy6G00719 Aquilegia oxysepala HOM05D000076 ORTHO05D002730 2.9e-28 129.0 147 55.8
Lalb_Chr10g0102521 Lupinus albus HOM05D000076 ORTHO05D002730 3.8e-28 128.6 142 52.8
ClCG11G014270 Citrullus lanatus HOM05D000076 ORTHO05D002730 5.0e-28 128.3 134 56.0
Potri.002G100400 Populus trichocarpa HOM05D000076 ORTHO05D002730 8.5e-28 127.5 137 48.9
arahy.Tifrunner.gnm1.ann1.BL38BA Arachis hypogaea HOM05D000076 ORTHO05D002730 1.1e-27 127.1 140 54.3
arahy.Tifrunner.gnm1.ann1.S2AXZ8 Arachis hypogaea HOM05D000076 ORTHO05D002730 1.1e-27 127.1 140 54.3
VMungo1309G1754 Vigna mungo HOM05D000076 ORTHO05D002730 1.1e-27 127.1 136 50.7
Nitab4.5_0001896g0100 Nicotiana tabacum HOM05D000076 ORTHO05D002730 1.4e-27 126.7 133 53.4
FAN22G1278 Fragaria x ananassa HOM05D000076 ORTHO05D015584 1.9e-27 126.3 59 94.9
SalBow2G0700 Salvia bowleyana HOM05D000076 ORTHO05D002730 3.2e-27 125.6 137 55.5
Phvul.009G032800 Phaseolus vulgaris HOM05D000076 ORTHO05D002730 4.2e-27 125.2 136 50.7
SalBow2G2024 Salvia bowleyana HOM05D000076 ORTHO05D015584 4.2e-27 125.2 134 53.0
CsaV3_3G047660 Cucumis sativus L. HOM05D000076 ORTHO05D002730 1.2e-26 123.6 134 54.5
Medtr5g064620 Medicago truncatula HOM05D000076 ORTHO05D002730 2.1e-26 122.9 136 55.9
Glyma.06G101200 Glycine max HOM05D000076 ORTHO05D002730 3.6e-26 122.1 142 47.2
COL.COLO4_12013 Corchorus olitorius HOM05D000076 ORTHO05D002730 4.7e-26 121.7 124 55.6
Eucgr.B00039 Eucalyptus grandis HOM05D000076 ORTHO05D002730 1.4e-25 120.2 165 45.5
SGA_v2.0_scaffold28G11903 Striga asiatica HOM05D000076 ORTHO05D002730 2.3e-25 119.4 131 54.2
Eucgr.F00374 Eucalyptus grandis HOM05D000076 ORTHO05D002730 3.0e-25 119.0 139 52.5
TWI56G1331 Tripterygium wilfordii HOM05D000076 ORTHO05D002730 3.9e-25 118.6 130 53.8
Actinidia33124 Actinidia chinensis HOM05D000076 ORTHO05D002730 5.1e-25 118.2 137 52.6
MSTRG.22168 Avicennia marina HOM05D000076 ORTHO05D002730 6.7e-25 117.9 128 53.1
Sabra02G0078600 Salix brachista HOM05D000076 ORTHO05D002730 6.7e-25 117.9 132 47.0
Actinidia37406 Actinidia chinensis HOM05D000076 ORTHO05D002730 8.8e-25 117.5 137 52.6
Thhalv10007232m.g Eutrema salsugineum HOM05D000076 ORTHO05D002730 3.3e-24 115.5 180 41.7
Glyma.04G099300 Glycine max HOM05D000076 ORTHO05D002730 4.4e-24 115.2 135 45.9
Cc10_g06710 Coffea canephora HOM05D000076 ORTHO05D002730 5.7e-24 114.8 139 52.5
Actinidia30794 Actinidia chinensis HOM05D000076 ORTHO05D021102 9.7e-24 114.0 126 51.6
Lj1g0009652 Lotus japonicus HOM05D000076 ORTHO05D002730 1.3e-23 113.6 78 67.9
TPR.G24260 Trifolium pratense HOM05D000076 ORTHO05D002730 2.8e-23 112.5 136 46.3
Ca_16038_v3 Cicer arietinum L. HOM05D000076 ORTHO05D002730 4.8e-23 111.7 146 46.6
MBI05_g22322_MAGBIO Magnolia biondii HOM05D000076 ORTHO05D002730 6.3e-23 111.3 141 49.6
ATR0684G012 Amborella trichopoda HOM05D000076 ORTHO05D002730 8.2e-23 110.9 130 51.5
CARHR022800 Cardamine hirsuta HOM05D000076 ORTHO05D002730 8.2e-23 110.9 174 40.8
Medtr3g099480 Medicago truncatula HOM05D000076 ORTHO05D002730 8.2e-23 110.9 137 46.7
Nitab4.5_0002434g0030 Nicotiana tabacum HOM05D000076 ORTHO05D002730 1.1e-22 110.5 84 63.1
arahy.Tifrunner.gnm1.ann1.SH9IX0 Arachis hypogaea HOM05D000076 ORTHO05D002730 1.4e-22 110.2 141 44.7
MD08G1188000 Malus domestica HOM05D000076 ORTHO05D002730 7.0e-22 107.8 126 52.4
arahy.Tifrunner.gnm1.ann1.C5EDTH Arachis hypogaea HOM05D000076 ORTHO05D002730 2.0e-21 106.3 148 43.9
Sp1g19940 Schrenkiella parvula HOM05D000076 ORTHO05D002730 5.9e-21 104.8 181 38.7
AL1G35980 Arabidopsis lyrata HOM05D000076 ORTHO05D002730 1.3e-20 103.6 178 37.6
vmacro21292 Vaccinium macrocarpon HOM05D000076 ORTHO05D002730 1.3e-20 103.6 118 52.5
Lalb_Chr11g0065271 Lupinus albus HOM05D000076 ORTHO05D002730 2.2e-20 102.8 136 44.9
THA.LOC104810657 Tarenaya hassleriana HOM05D000076 ORTHO05D002730 2.9e-20 102.4 176 38.6
Peaxi162Scf00160g10124 Petunia axillaris HOM05D000076 ORTHO05D002730 3.8e-20 102.1 128 49.2
C05p21560 Brassica napus HOM05D000076 ORTHO05D002730 6.5e-20 101.3 170 38.8
Sabra05G0122400 Salix brachista HOM05D000076 ORTHO05D007948 6.5e-20 101.3 135 44.4
MD15G1374000 Malus domestica HOM05D000076 ORTHO05D002730 8.5e-20 100.9 147 45.6
HPP92_011197 Vanilla planifolia HOM05D000076 ORTHO05D002730 8.5e-20 100.9 157 44.6
A09p42320 Brassica napus HOM05D000076 ORTHO05D002730 1.4e-19 100.1 170 38.2
BraA09t39713Z Brassica rapa HOM05D000076 ORTHO05D002730 1.4e-19 100.1 170 38.2
BolC5t30851H Brassica oleracea HOM05D000076 ORTHO05D002730 3.2e-19 99.0 170 38.2
AT1G22460 Arabidopsis thaliana HOM05D000076 ORTHO05D002730 4.2e-19 98.6 177 37.3
CDE06G2228 Ceratophyllum demersum HOM05D000076 ORTHO05D002730 5.5e-19 98.2 143 46.9
HPP92_011191 Vanilla planifolia HOM05D000076 ORTHO05D002730 1.6e-18 96.7 146 45.9
SEGI_30537 Sequoiadendron giganteum HOM05D000076 ORTHO05D002730 6.1e-18 94.7 135 44.4
Carub.0001s2199 Capsella rubella HOM05D000076 ORTHO05D002730 8.0e-18 94.4 170 35.9
unitig_8.g4844 Utricularia gibba HOM05D000076 ORTHO05D002730 1.0e-17 94.0 134 43.3
Lalb_Chr08g0242171 Lupinus albus HOM05D000076 ORTHO05D002730 2.3e-17 92.8 81 53.1
AUR62018968 Chenopodium quinoa HOM05D000076 ORTHO05D002730 6.7e-17 91.3 83 56.6
BcaC05g26171 Brassica carinata HOM05D000076 ORTHO05D002730 8.8e-17 90.9 83 57.8
Lj4A97T73 Lonicera japonica HOM05D000076 ORTHO05D002730 3.3e-16 89.0 57 70.2
Aa31LG7G6380 Aethionema arabicum HOM05D000076 ORTHO05D002730 3.7e-15 85.5 165 36.4
CDE03G0390 Ceratophyllum demersum HOM05D000076 ORTHO05D002730 6.3e-15 84.7 138 43.5
Mapoly0103s0076 Marchantia polymorpha HOM05D000076 ORTHO05D002730 6.3e-15 84.7 79 53.2
BcaB07g32257 Brassica carinata HOM05D000076 ORTHO05D002730 1.8e-14 83.2 47 78.7
Psat2g069680 Pisum sativum HOM05D000076 ORTHO05D002730 1.2e-13 80.5 47 72.3
Lj4A726G67 Lonicera japonica HOM05D000076 ORTHO05D002730 1.6e-13 80.1 57 66.7
Ah.05g169690 Amaranthus hybridus HOM05D000076 ORTHO05D002730 4.5e-13 78.6 84 50.0
Pp3c6_1830 Physcomitrium patens HOM05D000076 ORTHO05D002730 1.7e-12 76.6 79 54.4
Pp3c6_950 Physcomitrium patens HOM05D000076 ORTHO05D002730 5.0e-12 75.1 60 61.7
SMO144G0172 Selaginella moellendorffii HOM05D000076 ORTHO05D002730 6.5e-12 74.7 75 54.7
Cpa.g.sc36.178 Carica papaya HOM05D000076 ORTHO05D015584 1.5e-11 73.6 79 57.0
Pp3c3_20980 Physcomitrium patens HOM05D000076 ORTHO05D002730 1.5e-11 73.6 72 50.0
Hma1.2p1_1161F.1_g262570 Hydrangea macrophylla HOM05D000076 ORTHO05D015584 1.0e-09 67.4 74 48.6
Rhsim07G0205100 Rhododendron simsii HOM05D000076 ORTHO05D002730 2.3e-09 66.2 61 57.4
PSO017G3971 Papaver somniferum HOM05D000076 ORTHO05D015584 4.0e-09 65.5 49 59.2
Peaxi162Scf00030g02223 Petunia axillaris HOM05D000076 ORTHO05D002730 8.8e-09 64.3 87 51.7
FAN28G2472 Fragaria x ananassa HOM05D000076 ORTHO05D015584 4.8e-07 58.5 27 88.9
Sp6g40490 Schrenkiella parvula HOM05D000076 ORTHO05D001377 4.8e-07 58.5 57 42.1
Potri.002G105800 Populus trichocarpa HOM05D000076 ORTHO05D003143 1.1e-06 57.4 72 41.7
Sabra02G0083100 Salix brachista HOM05D000076 ORTHO05D003143 1.1e-06 57.4 73 41.1
Hund10958 Selenicereus undatus HOM05D000076 ORTHO05D002730 1.1e-06 57.4 59 45.8
CsaV3_6G041680 Cucumis sativus L. HOM05D000076 ORTHO05D002730 1.4e-06 57.0 53 45.3
ClCG01G015440 Citrullus lanatus HOM05D000076 ORTHO05D002730 2.4e-06 56.2 53 45.3
MELO3C008053.2 Cucumis melo HOM05D000076 ORTHO05D002730 3.1e-06 55.8 50 46.0
Sc07g0001720 Simmondsia chinensis HOM05D000076 ORTHO05D002730 4.1e-06 55.5 56 44.6
Sp2g27660 Schrenkiella parvula HOM05D000076 ORTHO05D002730 7.0e-06 54.7 73 38.4
BcaB04g19977 Brassica carinata HOM05D000076 ORTHO05D002730 9.1e-06 54.3 59 45.8
BraA09t36522Z Brassica rapa HOM05D000076 ORTHO05D002730 9.1e-06 54.3 53 49.1
FAN04G2113 Fragaria x ananassa HOM05D000076 ORTHO05D002730 9.1e-06 54.3 28 85.7
Potri.006G095300 Populus trichocarpa HOM05D000076 ORTHO05D001377 9.1e-06 54.3 45 48.9
SHI12769 Sapria himalayana HOM05D000076 ORTHO05D001377 9.1e-06 54.3 61 42.6
Sed0003081 Sechium edule HOM05D000076 ORTHO05D002730 9.1e-06 54.3 66 40.9
SEGI_04458 Sequoiadendron giganteum HOM05D000076 ORTHO05D002730 9.1e-06 54.3 45 53.3
VMungo0647G0353 Vigna mungo HOM05D000076 ORTHO05D001377 9.1e-06 54.3 47 46.8


User provided reference genes

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