Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 7.1e-298 1026.5 538 100.0
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.9e-282 975.3 517 96.5
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 2.5e-282 974.9 517 96.3
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 6.0e-281 970.3 517 95.7
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.7e-267 925.6 546 88.5
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 1.1e-253 879.8 500 89.0
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 8.9e-216 753.8 528 72.7
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 5.8e-215 751.1 518 75.3
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 1.3e-214 750.0 527 72.3
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 6.4e-198 694.5 511 71.2
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 1.4e-197 693.3 519 68.4
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 7.8e-196 687.6 530 67.9
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 3.0e-195 685.6 516 68.6
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 1.3e-193 680.2 510 69.4
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 8.1e-193 677.6 527 66.8
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 2.4e-192 676.0 562 65.1
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 2.6e-191 672.5 514 66.1
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 2.9e-190 669.1 519 66.7
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 1.1e-189 667.2 524 67.2
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 1.6e-188 663.3 520 65.8
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.6e-188 663.3 533 63.6
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 5.1e-187 658.3 537 63.7
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 8.7e-187 657.5 528 64.0
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 1.1e-186 657.1 544 64.7
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.1e-186 657.1 540 64.3
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.0e-184 648.7 514 65.2
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.0e-184 648.7 514 65.8
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.0e-183 646.4 520 65.2
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 4.5e-183 645.2 529 62.4
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 4.9e-182 641.7 523 64.6
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 8.4e-182 641.0 505 65.7
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 8.4e-182 641.0 519 64.4
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 1.4e-181 640.2 503 67.8
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 6.0e-180 634.8 560 62.1
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 3.9e-179 632.1 530 65.3
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 3.9e-179 632.1 526 63.3
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 5.1e-179 631.7 534 61.8
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.1e-178 630.6 600 56.2
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 1.9e-178 629.8 529 62.8
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 7.4e-178 627.9 525 62.9
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 9.6e-178 627.5 525 62.3
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 2.8e-177 625.9 556 60.1
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.8e-176 623.2 534 61.6
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.2e-175 620.5 528 62.1
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 6.5e-174 614.8 523 62.7
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 1.4e-173 613.6 532 60.7
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 1.4e-173 613.6 469 68.2
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 1.9e-173 613.2 556 57.4
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 2.5e-173 612.8 539 60.5
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.5e-173 612.8 574 56.1
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 7.1e-173 611.3 552 59.4
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 7.1e-173 611.3 523 62.3
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 7.1e-173 611.3 566 57.1
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.2e-172 610.5 539 60.5
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 1.2e-172 610.5 543 60.2
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.6e-172 610.1 568 57.6
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.1e-172 609.8 523 62.3
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.0e-171 607.4 575 56.5
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 1.3e-171 607.1 521 64.9
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.1e-170 604.0 524 60.7
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.9e-170 603.2 538 59.7
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 8.2e-169 597.8 452 67.0
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 9.0e-168 594.3 514 62.5
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 1.0e-166 590.9 599 56.3
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 1.3e-166 590.5 528 59.5
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 1.1e-165 587.4 563 57.7
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 1.2e-164 583.9 509 59.1
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 7.9e-164 581.3 432 68.5
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 8.7e-163 577.8 314 91.4
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 1.5e-162 577.0 567 56.8
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 2.5e-162 576.2 543 57.3
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 4.8e-161 572.0 535 59.8
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 9.0e-160 567.8 517 58.6
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.0e-158 564.3 480 61.7
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 1.4e-157 560.5 557 57.8
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.2e-156 557.4 518 56.9
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.0e-155 554.3 520 57.5
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.3e-155 553.1 537 55.9
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.1e-154 550.8 536 56.9
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 1.1e-154 550.8 559 53.7
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 4.3e-154 548.9 555 56.8
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 5.7e-154 548.5 531 56.1
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 7.4e-154 548.1 520 57.3
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 2.8e-153 546.2 520 57.3
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 4.8e-153 545.4 528 56.2
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 6.3e-153 545.0 536 55.6
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.1e-152 544.3 520 56.3
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 9.1e-152 541.2 365 69.6
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 4.5e-151 538.9 542 55.5
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.9e-150 536.2 540 54.8
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.1e-149 534.3 547 52.8
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.5e-149 533.1 571 54.5
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 3.2e-149 532.7 521 55.1
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 6.1e-148 528.5 512 54.3
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 1.5e-146 523.9 562 50.5
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 9.7e-146 521.2 514 52.9
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 1.4e-144 517.3 535 54.8
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 2.4e-144 516.5 364 68.4
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 2.6e-143 513.1 521 54.7
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 4.5e-143 512.3 563 49.7
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 2.9e-142 509.6 541 51.9
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 5.0e-142 508.8 533 53.5
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 7.2e-141 505.0 520 54.6
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 1.2e-140 504.2 479 55.1
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 3.0e-139 499.6 469 56.9
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 3.9e-139 499.2 406 60.6
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 1.7e-137 493.8 556 49.8
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.7e-137 493.8 525 52.0
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 9.1e-136 488.0 516 51.0
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 2.6e-135 486.5 299 75.6
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 2.3e-131 473.4 451 52.8
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 3.0e-131 473.0 515 49.5
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.6e-130 469.9 521 52.4
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 2.8e-129 466.5 390 59.0
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 8.3e-129 464.9 435 57.7
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 2.0e-127 460.3 536 48.3
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 4.5e-127 459.1 339 64.0
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 5.0e-126 455.7 322 68.6
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 1.2e-124 451.1 472 54.2
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 4.0e-123 446.0 529 46.9
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 1.2e-119 434.5 533 50.3
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 7.2e-117 425.2 270 71.9
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.2e-114 417.9 371 54.4
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.6e-114 416.8 469 49.5
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.1e-112 411.4 382 52.6
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 1.1e-112 411.4 392 52.0
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 2.4e-112 410.2 384 52.3
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 2.0e-111 407.1 362 53.6
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 2.7e-111 406.8 452 48.7
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 2.3e-110 403.7 349 55.9
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 1.1e-109 401.4 536 42.9
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 1.9e-109 400.6 466 46.4
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.8e-108 396.7 279 64.2
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 3.6e-108 396.4 537 42.6
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 4.7e-108 396.0 537 42.6
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 1.4e-107 394.4 566 41.5
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 1.8e-107 394.0 566 41.5
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 5.2e-107 392.5 321 59.5
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 3.2e-104 383.3 408 50.0
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.7e-103 380.2 413 50.4
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.3e-102 377.9 299 56.9
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 6.6e-102 375.6 552 40.4
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 6.6e-102 375.6 552 40.4
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 4.3e-101 372.9 553 41.0
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 4.3e-101 372.9 553 41.0
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 4.9e-97 359.4 517 40.8
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 8.3e-97 358.6 229 70.7
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.7e-95 353.6 457 45.7
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 6.8e-91 339.0 393 50.4
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.7e-87 327.0 208 71.6
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 5.1e-86 322.8 208 70.7
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 5.2e-83 312.8 305 48.2
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 2.0e-66 257.7 536 36.6
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 6.0e-63 246.1 291 51.9
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 1.4e-56 224.9 322 46.0
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 4.6e-55 219.9 163 64.4
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 4.1e-51 206.8 540 34.6
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 4.6e-47 193.4 566 31.3
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 1.8e-43 181.4 252 48.0
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.5e-42 178.3 260 37.7
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 3.4e-42 177.2 124 68.5
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 7.7e-42 176.0 306 40.5
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 6.7e-38 162.9 137 56.9
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.7e-38 162.9 105 72.4
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 4.5e-34 150.2 83 83.1
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.1e-29 135.6 82 76.8
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 5.9e-26 123.2 67 83.6
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 7.7e-26 122.9 131 46.6
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 5.0e-25 120.2 92 58.7
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 2.5e-24 117.9 65 83.1
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.2e-13 82.4 245 30.6
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.5e-13 82.0 231 33.8
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 3.7e-12 77.4 230 36.5
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 9.5e-08 62.8 357 24.9


User provided reference genes

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