Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 9.1e-50 199.9 99 100.0
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 7.2e-47 190.3 99 93.9
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 9.4e-47 189.9 99 92.9
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.6e-46 189.1 99 93.9
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 1.4e-42 176.0 99 87.9
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 1.1e-39 166.4 99 82.8
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 6.8e-37 157.1 99 77.8
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 1.5e-36 156.0 99 77.8
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 1.3e-35 152.9 107 73.8
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 1.1e-34 149.8 98 76.5
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 1.2e-33 146.4 94 75.5
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 7.8e-33 143.7 99 68.7
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 1.0e-32 143.3 94 72.3
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 2.9e-32 141.7 90 75.6
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 5.0e-32 141.0 99 71.7
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 8.6e-32 140.2 96 74.0
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 1.5e-31 139.4 99 67.7
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 2.5e-31 138.7 89 70.8
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 2.5e-31 138.7 99 70.7
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.3e-31 138.3 95 69.5
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 5.6e-31 137.5 94 69.1
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 7.3e-31 137.1 94 71.3
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 7.3e-31 137.1 95 68.4
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 9.5e-31 136.7 94 69.1
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 9.5e-31 136.7 95 68.4
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 9.5e-31 136.7 95 69.5
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.2e-30 136.3 95 68.4
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 1.2e-30 136.3 98 70.4
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 2.8e-30 135.2 93 69.9
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 3.6e-30 134.8 95 66.3
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 4.7e-30 134.4 95 68.4
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 8.0e-30 133.7 99 65.7
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 8.0e-30 133.7 99 66.7
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 1.0e-29 133.3 98 67.3
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.4e-29 132.9 95 67.4
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.8e-29 132.5 95 71.6
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 3.0e-29 131.7 93 71.0
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 4.0e-29 131.3 94 70.2
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 6.8e-29 130.6 96 66.7
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 6.8e-29 130.6 95 66.3
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 8.9e-29 130.2 98 65.3
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.5e-28 129.4 99 65.7
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 1.5e-28 129.4 99 64.6
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.0e-28 129.0 95 66.3
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 3.4e-28 128.3 102 63.7
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 3.4e-28 128.3 101 64.4
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 3.4e-28 128.3 77 75.3
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 3.4e-28 128.3 83 73.5
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 3.4e-28 128.3 95 66.3
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 3.4e-28 128.3 85 72.9
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 3.4e-28 128.3 85 72.9
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 7.5e-28 127.1 91 69.2
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 7.5e-28 127.1 96 64.6
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 1.3e-27 126.3 112 58.9
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.3e-27 126.3 99 67.7
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 1.3e-27 126.3 92 67.4
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.7e-27 125.9 78 73.1
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.7e-27 125.9 78 73.1
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 1.7e-27 125.9 92 67.4
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.7e-27 125.9 100 66.0
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 1.7e-27 125.9 92 67.4
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 2.2e-27 125.6 90 71.1
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 2.9e-27 125.2 99 65.7
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 3.7e-27 124.8 99 65.7
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 3.7e-27 124.8 89 67.4
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 4.9e-27 124.4 84 67.9
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 4.9e-27 124.4 84 67.9
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 4.9e-27 124.4 100 66.0
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 6.4e-27 124.0 98 64.3
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.4e-26 122.9 104 60.6
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 1.8e-26 122.5 87 67.8
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 2.4e-26 122.1 92 66.3
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 3.2e-26 121.7 84 64.3
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 4.1e-26 121.3 85 70.6
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 4.1e-26 121.3 92 65.2
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 4.1e-26 121.3 92 64.1
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 5.4e-26 120.9 76 75.0
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 7.0e-26 120.6 89 67.4
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.6e-25 119.4 100 62.0
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 1.6e-25 119.4 89 68.5
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.6e-25 119.4 95 63.2
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 2.0e-25 119.0 83 67.5
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 3.5e-25 118.2 97 61.9
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 5.9e-25 117.5 89 66.3
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 5.9e-25 117.5 95 63.2
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 7.8e-25 117.1 99 61.6
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 7.8e-25 117.1 74 77.0
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 1.3e-24 116.3 75 72.0
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 1.7e-24 115.9 97 60.8
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 1.7e-24 115.9 95 61.1
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.3e-24 115.5 95 61.1
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.3e-24 115.5 95 61.1
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 2.3e-24 115.5 87 65.5
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 3.9e-24 114.8 95 58.9
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 5.0e-24 114.4 87 65.5
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.9e-23 112.5 93 61.3
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.9e-23 112.5 88 64.8
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.9e-23 112.5 87 64.4
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 2.5e-23 112.1 74 66.2
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 3.3e-23 111.7 95 58.9
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 4.3e-23 111.3 78 67.9
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 9.5e-23 110.2 72 70.8
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 9.5e-23 110.2 72 70.8
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 9.5e-23 110.2 95 56.8
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 1.6e-22 109.4 79 64.6
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 1.6e-22 109.4 79 64.6
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 1.6e-22 109.4 72 70.8
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 1.6e-22 109.4 72 70.8
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.6e-22 109.4 90 62.2
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.6e-22 109.4 102 54.9
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.6e-22 109.4 102 54.9
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 2.1e-22 109.0 81 64.2
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 2.8e-22 108.6 100 56.0
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 3.6e-22 108.2 100 57.0
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 3.6e-22 108.2 100 57.0
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 4.7e-22 107.8 84 65.5
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 4.7e-22 107.8 82 67.1
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 6.2e-22 107.5 74 71.6
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 8.0e-22 107.1 66 74.2
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 8.0e-22 107.1 67 67.2
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.0e-21 104.8 96 53.1
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 2.0e-20 102.4 78 64.1
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 3.4e-20 101.7 86 57.0
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 4.4e-20 101.3 91 52.7
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 9.8e-20 100.1 76 61.8
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 9.8e-20 100.1 67 70.1
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 9.8e-20 100.1 78 60.3
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 9.8e-20 100.1 63 73.0
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 1.7e-19 99.4 90 53.3
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 1.7e-19 99.4 74 66.2
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 2.9e-19 98.6 63 71.4
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.4e-18 96.3 83 60.2
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.9e-18 95.9 97 51.5
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 1.6e-17 92.8 110 47.3
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 2.7e-17 92.0 78 61.5
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 2.7e-17 92.0 78 61.5
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 3.5e-17 91.7 68 63.2
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.6e-17 91.3 68 64.7
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 6.0e-17 90.9 61 70.5
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 3.9e-16 88.2 77 59.7
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 1.1e-15 86.7 91 48.4
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 1.1e-15 86.7 66 59.1
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 1.9e-15 85.9 63 61.9
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 7.3e-15 84.0 63 60.3
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 1.2e-14 83.2 101 44.6
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.6e-14 82.8 64 60.9
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.6e-14 82.8 56 66.1
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.7e-14 81.3 56 64.3
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 6.2e-14 80.9 56 64.3
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 4.0e-13 78.2 110 43.6
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 2.0e-12 75.9 63 49.2
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.2e-11 72.4 50 64.0
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 3.2e-10 68.6 44 70.5
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 4.1e-10 68.2 44 68.2
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 1.5e-07 59.7 73 41.1
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 4.3e-07 58.2 45 66.7


User provided reference genes

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