Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 8.9e-285 983.0 530 100.0
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.3e-279 964.5 530 98.3
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 4.0e-277 957.6 530 97.7
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 2.6e-276 954.9 530 97.4
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 7.5e-276 953.4 530 97.4
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 3.1e-261 904.8 530 92.1
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 2.7e-225 785.4 528 81.6
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 4.8e-222 774.6 528 80.3
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 7.2e-210 734.2 525 76.8
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 5.3e-205 718.0 531 75.0
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 2.0e-204 716.1 520 74.8
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 2.0e-204 716.1 457 82.1
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 8.5e-203 710.7 460 82.0
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 1.1e-202 710.3 541 72.3
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 1.2e-201 706.8 450 83.1
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 8.0e-201 704.1 463 81.4
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 8.0e-201 704.1 525 73.3
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 2.6e-199 699.1 488 77.9
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 3.7e-198 695.3 585 68.4
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 8.2e-198 694.1 532 72.7
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 1.1e-197 693.7 442 83.9
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 1.8e-197 693.0 487 77.2
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 1.8e-197 693.0 485 77.9
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 9.1e-197 690.6 455 80.4
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 1.2e-196 690.3 458 79.7
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 3.5e-196 688.7 458 79.5
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 3.5e-196 688.7 444 82.2
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 5.9e-196 688.0 458 79.7
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 1.0e-195 687.2 464 80.4
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 1.0e-195 687.2 450 80.4
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 1.0e-195 687.2 450 80.4
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 5.0e-195 684.9 512 73.2
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 5.0e-195 684.9 442 82.6
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 5.0e-195 684.9 479 77.2
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 5.0e-195 684.9 517 73.7
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 5.0e-195 684.9 485 76.3
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 8.5e-195 684.1 541 71.5
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 1.5e-194 683.3 528 72.2
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 1.9e-194 682.9 544 70.6
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 5.5e-194 681.4 459 79.5
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 1.6e-193 679.9 486 75.9
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 2.1e-193 679.5 515 73.4
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 4.7e-193 678.3 456 78.7
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 4.7e-193 678.3 435 82.5
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 8.0e-193 677.6 481 75.9
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 8.0e-193 677.6 482 76.3
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 1.4e-192 676.8 446 80.5
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 1.8e-192 676.4 507 73.2
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 1.8e-192 676.4 482 75.7
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 1.8e-192 676.4 452 81.4
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 2.3e-192 676.0 444 81.1
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 3.0e-192 675.6 481 76.9
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 3.0e-192 675.6 457 78.6
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 4.0e-192 675.2 482 75.5
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 4.0e-192 675.2 482 75.5
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 4.0e-192 675.2 503 75.1
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 5.2e-192 674.9 434 82.0
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 5.2e-192 674.9 485 76.5
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 1.5e-191 673.3 509 73.9
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 2.0e-191 672.9 495 75.4
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 5.7e-191 671.4 482 75.3
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 7.5e-191 671.0 439 80.9
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.3e-190 670.2 505 73.3
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 2.8e-190 669.1 511 73.2
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 1.4e-189 666.8 483 74.7
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 1.8e-189 666.4 526 71.1
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 7.0e-189 664.5 432 82.2
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 7.0e-189 664.5 454 77.8
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 9.1e-189 664.1 490 74.9
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.6e-188 663.3 420 82.9
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 7.7e-188 661.0 514 73.2
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 1.0e-187 660.6 457 77.5
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 2.2e-187 659.4 439 79.5
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 3.8e-187 658.7 435 80.9
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 1.5e-186 656.8 487 74.1
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.5e-186 656.8 528 70.3
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 5.5e-186 654.8 440 79.5
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 3.6e-185 652.1 459 75.8
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 6.1e-185 651.4 474 73.6
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 1.0e-184 650.6 469 75.3
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 1.0e-184 650.6 469 75.3
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 1.0e-184 650.6 405 83.7
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 1.8e-184 649.8 487 72.9
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 2.3e-184 649.4 510 70.8
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 2.3e-184 649.4 462 78.4
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 1.2e-183 647.1 534 68.4
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 2.6e-183 646.0 469 75.1
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 5.7e-183 644.8 445 79.6
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 1.3e-182 643.7 456 75.0
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 2.2e-182 642.9 455 75.8
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 1.1e-181 640.6 424 80.7
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 9.2e-181 637.5 451 76.1
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 2.0e-180 636.3 466 72.5
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.7e-179 633.3 434 77.9
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 2.3e-179 632.9 489 70.3
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 2.3e-179 632.9 455 75.2
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 6.6e-179 631.3 429 78.1
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 5.6e-178 628.2 460 74.6
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 1.2e-177 627.1 404 80.4
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 3.6e-177 625.5 435 76.8
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 6.1e-177 624.8 506 67.0
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 6.8e-176 621.3 431 74.2
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 1.2e-175 620.5 531 67.2
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 1.3e-174 617.1 449 73.3
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 3.2e-173 612.5 485 68.9
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 2.0e-172 609.8 485 70.9
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 7.3e-170 601.3 416 75.2
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 2.8e-169 599.4 467 69.8
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 1.4e-168 597.0 493 69.4
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 7.5e-167 591.3 478 68.2
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 3.5e-164 582.4 466 68.5
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 1.7e-163 580.1 493 66.9
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 8.9e-160 567.8 421 74.6
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.5e-154 549.7 376 81.9
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 7.1e-149 531.6 453 64.2
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 7.1e-149 531.6 453 64.2
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.6e-140 503.8 446 59.9
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 1.1e-136 491.1 439 59.9
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 7.6e-135 485.0 379 72.8
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 2.2e-134 483.4 417 60.2
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 7.6e-127 458.4 378 66.7
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 7.9e-124 448.4 360 68.3
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 2.4e-120 436.8 367 62.9
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 8.7e-107 391.7 229 90.0
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 7.9e-100 368.6 421 49.6
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 4.4e-90 336.3 265 69.1
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 2.2e-89 334.0 434 48.4
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 1.2e-74 285.0 435 40.5
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 1.6e-71 274.6 167 89.2
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 2.3e-70 270.8 386 39.6
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 4.2e-69 266.5 174 84.5
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 2.3e-62 244.2 217 61.3
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 1.1e-61 241.9 417 34.1
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.6e-55 221.5 406 34.5
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 3.0e-54 217.2 453 36.4
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 6.2e-52 209.5 163 66.3
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 2.6e-50 204.1 235 53.2
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 2.3e-38 164.5 125 63.2
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 1.1e-35 155.6 141 62.4
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 6.9e-27 126.3 106 63.2
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 6.9e-27 126.3 170 49.4
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 3.8e-25 120.6 98 72.4
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 4.2e-24 117.1 84 69.0
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 4.0e-19 100.5 101 57.4
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 6.9e-19 99.8 388 25.5
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 1.3e-12 79.0 425 26.4
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 7.6e-10 69.7 67 62.7
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 9.9e-10 69.3 348 24.4


User provided reference genes

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