Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0137 Fragaria x ananassa HOM05D000042 ORTHO05D000028 1.3e-67 259.6 137 100.0
FAN13G0936 Fragaria x ananassa HOM05D000042 ORTHO05D000028 7.6e-55 217.2 163 76.7
FAN18G2977 Fragaria x ananassa HOM05D000042 ORTHO05D000028 3.6e-44 181.8 144 72.9
FvH4_5g08530 Fragaria vesca HOM05D000042 ORTHO05D000028 1.5e-42 176.4 105 91.4
FAN08G0396 Fragaria x ananassa HOM05D000042 ORTHO05D000028 2.5e-37 159.1 163 66.3
MD06G1140100 Malus domestica HOM05D000042 ORTHO05D000028 4.8e-25 118.2 107 64.5
MD14G1155500 Malus domestica HOM05D000042 ORTHO05D000028 4.8e-25 118.2 100 69.0
Prupe.5G149400 Prunus persica HOM05D000042 ORTHO05D000028 5.3e-24 114.8 98 68.4
COL.COLO4_07125 Corchorus olitorius HOM05D000042 ORTHO05D000028 1.9e-21 106.3 108 56.5
CiPaw.11G005800 Carya illinoinensis HOM05D000042 ORTHO05D000028 3.2e-21 105.5 94 62.8
RcHm_v2.0_Chr7g0189871 Rosa chinensis HOM05D000042 ORTHO05D000028 6.1e-20 101.3 87 69.0
Manes.14G049900 Manihot esculenta HOM05D000042 ORTHO05D000028 6.8e-19 97.8 88 59.1
DCAR_021627 Daucus carota HOM05D000042 ORTHO05D000028 1.2e-18 97.1 104 51.9
QL10p002604 Quercus lobata HOM05D000042 ORTHO05D000028 1.2e-18 97.1 109 52.3
CANSAT80G0540 Cannabis sativa HOM05D000042 ORTHO05D000028 9.7e-18 94.0 87 55.2
CANSAT80G0819 Cannabis sativa HOM05D000042 ORTHO05D000028 9.7e-18 94.0 87 55.2
Potri.015G098400 Populus trichocarpa HOM05D000042 ORTHO05D000028 2.2e-17 92.8 84 58.3
GSVIVG01008560001 Vitis vinifera HOM05D000042 ORTHO05D000028 2.8e-17 92.4 84 58.3
CANSAT56G2757 Cannabis sativa HOM05D000042 ORTHO05D000028 1.1e-16 90.5 84 57.1
HanXRQChr09g0273361 Helianthus annuus HOM05D000042 ORTHO05D000028 1.1e-16 90.5 100 48.0
Duzib068G1273 Durio zibethinus HOM05D000042 ORTHO05D000028 1.8e-16 89.7 97 51.5
Eucgr.K02711 Eucalyptus grandis HOM05D000042 ORTHO05D000028 1.8e-16 89.7 82 58.5
ClCG03G003860 Citrullus lanatus HOM05D000042 ORTHO05D000028 2.4e-16 89.4 81 55.6
PSO478G1570 Papaver somniferum HOM05D000042 ORTHO05D000028 2.4e-16 89.4 93 50.5
Sabra12G0073000 Salix brachista HOM05D000042 ORTHO05D000028 2.4e-16 89.4 104 49.0
TWI14G0626 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 2.4e-16 89.4 84 53.6
Nn4g22279 Nelumbo nucifera HOM05D000042 ORTHO05D000028 3.1e-16 89.0 108 50.9
PSO017G5542 Papaver somniferum HOM05D000042 ORTHO05D000028 3.1e-16 89.0 83 53.0
Aqoxy3G01582 Aquilegia oxysepala HOM05D000042 ORTHO05D000028 4.1e-16 88.6 93 55.9
Sabra15G0119000 Salix brachista HOM05D000042 ORTHO05D000028 7.0e-16 87.8 83 56.6
Sopen03g029910 Solanum pennellii HOM05D000042 ORTHO05D000028 1.2e-15 87.0 104 49.0
PGSC0003DMG401015205 Solanum tuberosum HOM05D000042 ORTHO05D000028 1.6e-15 86.7 84 56.0
Cpa.g.sc13.95 Carica papaya HOM05D000042 ORTHO05D000028 2.0e-15 86.3 86 52.3
Gohir.A11G037000 Gossypium hirsutum HOM05D000042 ORTHO05D000028 2.7e-15 85.9 79 54.4
Gorai.007G043400 Gossypium raimondii HOM05D000042 ORTHO05D000028 2.7e-15 85.9 78 55.1
MELO3C002369.2 Cucumis melo HOM05D000042 ORTHO05D000028 1.0e-14 84.0 113 44.2
Gohir.D11G040300 Gossypium hirsutum HOM05D000042 ORTHO05D000028 1.3e-14 83.6 78 53.8
CsaV3_1G009750 Cucumis sativus L. HOM05D000042 ORTHO05D000028 1.7e-14 83.2 81 50.6
Rhsim12G0176200 Rhododendron simsii HOM05D000042 ORTHO05D000028 1.7e-14 83.2 84 50.0
ECA232G0280 Erigeron canadensis HOM05D000042 ORTHO05D000028 8.5e-14 80.9 77 50.6
Cfa018779 Carpinus fangiana HOM05D000042 ORTHO05D000028 9.4e-13 77.4 69 58.0
Duzib205G1324 Durio zibethinus HOM05D000042 ORTHO05D000028 1.6e-12 76.6 71 54.9
MSTRG.4607 Avicennia marina HOM05D000042 ORTHO05D000028 2.1e-12 76.3 78 53.8
Lsat_1_v5_gn_4_81480 Lactuca sativa HOM05D000042 ORTHO05D000028 6.1e-12 74.7 84 47.6
Nitab4.5_0010693g0010 Nicotiana tabacum HOM05D000042 ORTHO05D000028 6.1e-12 74.7 108 46.3
PGR044G1501 Punica granatum HOM05D000042 ORTHO05D000028 1.8e-11 73.2 97 43.3
Thecc.03G131100 Theobroma cacao HOM05D000042 ORTHO05D000028 8.8e-11 70.9 66 54.5
Migut.D01274 Erythranthe guttata HOM05D000042 ORTHO05D000028 1.2e-10 70.5 70 52.9
Sc22g0003780 Simmondsia chinensis HOM05D000042 ORTHO05D000028 2.6e-10 69.3 73 47.9
Sed0013411 Sechium edule HOM05D000042 ORTHO05D000028 3.4e-10 68.9 73 47.9
Solyc03g019710.3 Solanum lycopersicum HOM05D000042 ORTHO05D000028 2.2e-09 66.2 104 41.3
Lj5A95T80 Lonicera japonica HOM05D000042 ORTHO05D000028 3.7e-09 65.5 50 64.0
Atru.chr6.1819 Acer truncatum HOM05D000042 ORTHO05D000028 6.3e-09 64.7 79 48.1
TAR374G0861 Trochodendron aralioides HOM05D000042 ORTHO05D000028 3.1e-08 62.4 55 54.5
MBI07_g11276_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000028 4.1e-08 62.0 58 50.0
HanXRQChr15g0472781 Helianthus annuus HOM05D000042 ORTHO05D000028 9.1e-08 60.8 81 38.3
CAN.G587.54 Capsicum annuum HOM05D000042 ORTHO05D000028 1.2e-07 60.5 86 40.7
Cfa007693 Carpinus fangiana HOM05D000042 ORTHO05D000028 2.7e-07 59.3 81 40.7
Eucgr.K02547 Eucalyptus grandis HOM05D000042 ORTHO05D000028 2.7e-07 59.3 84 42.9
Lsat_1_v5_gn_3_97021 Lactuca sativa HOM05D000042 ORTHO05D000028 3.5e-07 58.9 81 38.3
Psat3g203480 Pisum sativum HOM05D000042 ORTHO05D000028 4.5e-07 58.5 80 38.8
Zm00001eb214750 Zea mays HOM05D000042 ORTHO05D000028 4.5e-07 58.5 84 39.3
HanXRQChr02g0043891 Helianthus annuus HOM05D000042 ORTHO05D000028 5.9e-07 58.2 81 38.3
Lj1g0005828 Lotus japonicus HOM05D000042 ORTHO05D000028 5.9e-07 58.2 80 40.0
PGR004G1332 Punica granatum HOM05D000042 ORTHO05D000028 5.9e-07 58.2 92 35.9
Ciclev10032927m.g Citrus clementina HOM05D000042 ORTHO05D000028 7.7e-07 57.8 55 50.9
MELO3C026299.2 Cucumis melo HOM05D000042 ORTHO05D000028 7.7e-07 57.8 82 43.9
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 7.7e-07 57.8 93 36.6
ECA246G4787 Erigeron canadensis HOM05D000042 ORTHO05D000028 7.7e-07 57.8 81 37.0
Ca_06900_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000028 1.0e-06 57.4 80 38.8
Eucgr.I02059 Eucalyptus grandis HOM05D000042 ORTHO05D000028 1.0e-06 57.4 81 39.5
Manes.01G103200 Manihot esculenta HOM05D000042 ORTHO05D000028 1.0e-06 57.4 81 37.0
TWI32G0107 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 1.0e-06 57.4 86 36.0
C09p08000 Brassica napus HOM05D000600 ORTHO05D000432 1.3e-06 57.0 103 35.9
CANSAT64G1808 Cannabis sativa HOM05D000042 ORTHO05D000028 1.3e-06 57.0 100 37.0
CiPaw.03G083300 Carya illinoinensis HOM05D000042 ORTHO05D000028 1.3e-06 57.0 80 38.8
COL.COLO4_04521 Corchorus olitorius HOM05D000042 ORTHO05D000028 1.3e-06 57.0 81 37.0
HanXRQChr14g0452461 Helianthus annuus HOM05D000042 ORTHO05D000028 1.3e-06 57.0 81 35.8
RcHm_v2.0_Chr2g0164941 Rosa chinensis HOM05D000042 ORTHO05D000028 1.3e-06 57.0 81 34.6
PGSC0003DMG400024625 Solanum tuberosum HOM05D000042 ORTHO05D000028 1.3e-06 57.0 84 40.5
FvH4_4g29600 Fragaria vesca HOM05D000042 ORTHO05D000028 1.7e-06 56.6 85 37.6
FAN12G2013 Fragaria x ananassa HOM05D000042 ORTHO05D000028 1.7e-06 56.6 85 37.6
Medtr7g016630 Medicago truncatula HOM05D000042 ORTHO05D000028 1.7e-06 56.6 80 38.8
Phvul.008G027800 Phaseolus vulgaris HOM05D000042 ORTHO05D000028 1.7e-06 56.6 106 34.0
Potri.004G115400 Populus trichocarpa HOM05D000042 ORTHO05D000028 1.7e-06 56.6 88 37.5
Solyc03g114830.3 Solanum lycopersicum HOM05D000042 ORTHO05D000028 1.7e-06 56.6 84 40.5
Sopen03g033910 Solanum pennellii HOM05D000042 ORTHO05D000028 1.7e-06 56.6 84 40.5
arahy.Tifrunner.gnm1.ann1.IQR3N2 Arachis hypogaea HOM05D000042 ORTHO05D000028 2.3e-06 56.2 81 39.5
arahy.Tifrunner.gnm1.ann1.SJTD5W Arachis hypogaea HOM05D000042 ORTHO05D000028 2.3e-06 56.2 81 37.0
arahy.Tifrunner.gnm1.ann1.WIWA1B Arachis hypogaea HOM05D000042 ORTHO05D000028 2.3e-06 56.2 81 39.5
arahy.Tifrunner.gnm1.ann1.Y0XCRM Arachis hypogaea HOM05D000042 ORTHO05D000028 2.3e-06 56.2 81 37.0
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 2.3e-06 56.2 105 39.0
Glyma.13G052100 Glycine max HOM05D000042 ORTHO05D000028 2.3e-06 56.2 86 37.2
Peaxi162Scf00089g00129 Petunia axillaris HOM05D000042 ORTHO05D000028 2.3e-06 56.2 55 50.9
PGR044G1798 Punica granatum HOM05D000042 ORTHO05D000028 2.3e-06 56.2 84 39.3
Solyc06g069430.3 Solanum lycopersicum HOM05D000042 ORTHO05D000028 2.3e-06 56.2 84 38.1
Sopen06g026710 Solanum pennellii HOM05D000042 ORTHO05D000028 2.3e-06 56.2 84 38.1
MSTRG.22899 Avicennia marina HOM05D000042 ORTHO05D000028 2.9e-06 55.8 58 55.2
Glyma.19G034600 Glycine max HOM05D000042 ORTHO05D000028 2.9e-06 55.8 86 37.2
Gohir.A04G145700 Gossypium hirsutum HOM05D000042 ORTHO05D000028 2.9e-06 55.8 81 38.3
Gohir.D04G190200 Gossypium hirsutum HOM05D000042 ORTHO05D000028 2.9e-06 55.8 81 38.3
Os07g0108900 Oryza sativa ssp. japonica HOM05D000042 ORTHO05D000028 2.9e-06 55.8 84 38.1
Phvul.004G042450 Phaseolus vulgaris HOM05D000042 ORTHO05D000028 2.9e-06 55.8 105 33.3
VMungo0464G0970 Vigna mungo HOM05D000042 ORTHO05D000028 2.9e-06 55.8 88 36.4
Ciclev10012594m.g Citrus clementina HOM05D000042 ORTHO05D000028 3.8e-06 55.5 81 35.8
Gohir.D03G097900 Gossypium hirsutum HOM05D000042 ORTHO05D000028 3.8e-06 55.5 81 37.0
Gorai.003G103000 Gossypium raimondii HOM05D000042 ORTHO05D000028 3.8e-06 55.5 81 37.0
MD09G1074100 Malus domestica HOM05D000042 ORTHO05D000028 3.8e-06 55.5 84 38.1
Prupe.1G290600 Prunus persica HOM05D000042 ORTHO05D000028 3.8e-06 55.5 90 36.7
Prupe.3G249300 Prunus persica HOM05D000042 ORTHO05D000028 3.8e-06 55.5 81 38.3
Atru.chr8.654 Acer truncatum HOM05D000042 ORTHO05D000028 5.0e-06 55.1 81 38.3
DCAR_007204 Daucus carota HOM05D000042 ORTHO05D000028 5.0e-06 55.1 81 38.3
FAN17G2823 Fragaria x ananassa HOM05D000042 ORTHO05D000028 5.0e-06 55.1 85 36.5
Gohir.A03G071300 Gossypium hirsutum HOM05D000042 ORTHO05D000028 5.0e-06 55.1 84 35.7
Phvul.009G203400 Phaseolus vulgaris HOM05D000042 ORTHO05D000028 5.0e-06 55.1 114 33.3
VMungo1309G0377 Vigna mungo HOM05D000042 ORTHO05D000028 5.0e-06 55.1 114 33.3
CAN.G1592.5 Capsicum annuum HOM05D000042 ORTHO05D000028 6.6e-06 54.7 84 38.1
CiPaw.04G052300 Carya illinoinensis HOM05D000042 ORTHO05D000028 6.6e-06 54.7 67 43.3
DCAR_030052 Daucus carota HOM05D000042 ORTHO05D000028 6.6e-06 54.7 81 39.5
Duzib138G0213 Durio zibethinus HOM05D000042 ORTHO05D000028 6.6e-06 54.7 81 33.3
Glyma.08G250800 Glycine max HOM05D000042 ORTHO05D000028 6.6e-06 54.7 80 36.2
Hma1.2p1_0656F.1_g196810 Hydrangea macrophylla HOM05D000042 ORTHO05D000028 6.6e-06 54.7 115 30.4
Rhsim08G0076800 Rhododendron simsii HOM05D000042 ORTHO05D000028 6.6e-06 54.7 82 36.6
PGSC0003DMG400004081 Solanum tuberosum HOM05D000042 ORTHO05D000028 6.6e-06 54.7 84 36.9
ClCG07G016030 Citrullus lanatus HOM05D000042 ORTHO05D000028 8.6e-06 54.3 84 38.1
HanXRQChr08g0223681 Helianthus annuus HOM05D000042 ORTHO05D000028 8.6e-06 54.3 81 35.8
MD16G1058500 Malus domestica HOM05D000042 ORTHO05D000028 8.6e-06 54.3 90 36.7
Manes.02G059300 Manihot esculenta HOM05D000042 ORTHO05D000028 8.6e-06 54.3 85 35.3
SGA_v2.0_scaffold37G14631 Striga asiatica HOM05D000042 ORTHO05D000028 8.6e-06 54.3 55 49.1
THA.LOC104801073 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 8.6e-06 54.3 110 33.6


User provided reference genes

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