Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0135 Fragaria x ananassa HOM05D007134 ORTHO05D009004 2.7e-157 558.5 267 100.0
FvH4_5g21740 Fragaria vesca HOM05D007134 ORTHO05D009004 4.1e-145 518.1 313 81.5
FAN08G2031 Fragaria x ananassa HOM05D007134 ORTHO05D009004 4.1e-145 518.1 313 81.5
FAN18G1678 Fragaria x ananassa HOM05D007134 ORTHO05D009004 3.2e-142 508.4 338 75.4
FAN13G3184 Fragaria x ananassa HOM05D007134 ORTHO05D009004 1.6e-141 506.1 313 79.6
RcHm_v2.0_Chr7g0209231 Rosa chinensis HOM05D007134 ORTHO05D009004 2.0e-136 489.2 313 78.0
Prupe.5G039700 Prunus persica HOM05D007134 ORTHO05D009004 3.9e-111 405.2 315 63.5
MD06G1032400 Malus domestica HOM05D007134 ORTHO05D009004 1.0e-108 397.1 316 63.0
CANSAT21G0276 Cannabis sativa HOM05D007134 ORTHO05D009004 8.1e-101 370.9 307 59.9
CiPaw.11G091800 Carya illinoinensis HOM05D007134 ORTHO05D009004 7.5e-99 364.4 309 59.2
Cfa012416 Carpinus fangiana HOM05D007134 ORTHO05D009004 3.7e-98 362.1 318 57.9
Dinv28939 Davidia involucrata HOM05D007134 ORTHO05D009004 3.5e-96 355.5 306 58.5
Actinidia03384 Actinidia chinensis HOM05D007134 ORTHO05D009004 3.0e-95 352.4 325 55.1
Hma1.2p1_2785F.1_g328490 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 3.9e-95 352.1 314 56.4
Atru.chr6.1744 Acer truncatum HOM05D007134 ORTHO05D009004 5.1e-95 351.7 306 56.9
Hma1.2p1_0991F.1_g244990 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 5.1e-95 351.7 310 57.1
TAR629G3531 Trochodendron aralioides HOM05D007134 ORTHO05D009004 5.1e-95 351.7 306 55.9
COL.COLO4_17065 Corchorus olitorius HOM05D007134 ORTHO05D009004 3.3e-94 349.0 296 57.4
Potri.001G144000 Populus trichocarpa HOM05D007134 ORTHO05D009004 7.3e-94 347.8 308 55.5
Peaxi162Scf00006g04220 Petunia axillaris HOM05D007134 ORTHO05D009004 1.2e-93 347.1 297 58.2
Haze_08260 Corylus avellana HOM05D007134 ORTHO05D009004 1.6e-93 346.7 334 54.8
ClCG10G001760 Citrullus lanatus HOM05D007134 ORTHO05D009004 2.1e-93 346.3 306 55.6
PSO782G3567 Papaver somniferum HOM05D007134 ORTHO05D009004 2.8e-93 345.9 305 55.1
CSS0021568 Camellia sinensis var. sinensis HOM05D007134 ORTHO05D009004 1.1e-92 344.0 294 59.2
Thecc.03G230400 Theobroma cacao HOM05D007134 ORTHO05D009004 1.4e-92 343.6 296 57.4
Gohir.D12G211900 Gossypium hirsutum HOM05D007134 ORTHO05D009004 5.2e-92 341.7 296 57.4
Gorai.008G227500 Gossypium raimondii HOM05D007134 ORTHO05D009004 5.2e-92 341.7 296 57.4
GSVIVG01013189001 Vitis vinifera HOM05D007134 ORTHO05D009004 6.8e-92 341.3 290 59.7
Nitab4.5_0002931g0030 Nicotiana tabacum HOM05D007134 ORTHO05D009004 3.4e-91 339.0 299 56.9
TPR.G28658 Trifolium pratense HOM05D007134 ORTHO05D009004 3.4e-91 339.0 296 56.1
Solyc08g077090.3 Solanum lycopersicum HOM05D007134 ORTHO05D009004 7.6e-91 337.8 295 56.6
Duzib205G1618 Durio zibethinus HOM05D007134 ORTHO05D009004 9.9e-91 337.4 296 56.8
Glyma.05G112400 Glycine max HOM05D007134 ORTHO05D009004 9.9e-91 337.4 305 53.4
Manes.15G172000 Manihot esculenta HOM05D007134 ORTHO05D009004 9.9e-91 337.4 300 57.3
MELO3C013860.2 Cucumis melo HOM05D007134 ORTHO05D009004 2.2e-90 336.3 308 53.9
Lj8A293T18 Lonicera japonica HOM05D007134 ORTHO05D009004 6.4e-90 334.7 281 59.8
Sed0020644 Sechium edule HOM05D007134 ORTHO05D009004 6.4e-90 334.7 311 53.4
Sc01g0007540 Simmondsia chinensis HOM05D007134 ORTHO05D009004 1.9e-89 333.2 299 54.2
Sopen08g025670 Solanum pennellii HOM05D007134 ORTHO05D009004 3.2e-89 332.4 295 55.9
A03p19520 Brassica napus HOM05D007134 ORTHO05D009004 4.1e-89 332.0 305 54.8
BraA03t11205Z Brassica rapa HOM05D007134 ORTHO05D009004 4.1e-89 332.0 305 54.8
Phvul.003G230000 Phaseolus vulgaris HOM05D007134 ORTHO05D009004 9.2e-89 330.9 294 53.7
Psat4g079040 Pisum sativum HOM05D007134 ORTHO05D009004 2.7e-88 329.3 298 54.7
C03p22750 Brassica napus HOM05D007134 ORTHO05D009004 3.5e-88 328.9 279 57.3
CAN.G1659.3 Capsicum annuum HOM05D007134 ORTHO05D009004 4.6e-88 328.6 296 54.4
Ca_22068_v3 Cicer arietinum L. HOM05D007134 ORTHO05D009004 4.6e-88 328.6 297 54.5
THA.LOC104814437 Tarenaya hassleriana HOM05D007134 ORTHO05D009004 4.6e-88 328.6 290 56.6
Eucgr.E00292 Eucalyptus grandis HOM05D007134 ORTHO05D009004 6.0e-88 328.2 297 54.2
Lj4g0007831 Lotus japonicus HOM05D007134 ORTHO05D009004 7.8e-88 327.8 315 52.1
PGR042G2424 Punica granatum HOM05D007134 ORTHO05D009004 7.8e-88 327.8 311 53.4
TWI81G0484 Tripterygium wilfordii HOM05D007134 ORTHO05D009004 7.8e-88 327.8 301 54.5
Aqoxy3G02427 Aquilegia oxysepala HOM05D007134 ORTHO05D009004 1.0e-87 327.4 314 53.5
AL4G31350 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 1.0e-87 327.4 289 56.1
Ciclev10032247m.g Citrus clementina HOM05D007134 ORTHO05D009004 1.0e-87 327.4 294 55.1
AT2G35320 Arabidopsis thaliana HOM05D007134 ORTHO05D009004 1.7e-87 326.6 295 54.6
BolC3t14673H Brassica oleracea HOM05D007134 ORTHO05D009004 2.3e-87 326.2 279 57.0
AUR62007266 Chenopodium quinoa HOM05D007134 ORTHO05D009004 2.3e-87 326.2 294 55.8
Sabra01G0112400 Salix brachista HOM05D007134 ORTHO05D009004 5.1e-87 325.1 331 50.5
PGSC0003DMG400017530 Solanum tuberosum HOM05D007134 ORTHO05D009004 6.6e-87 324.7 319 52.7
AL457U10010 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 8.6e-87 324.3 289 55.7
Glyma.17G154600 Glycine max HOM05D007134 ORTHO05D009004 8.6e-87 324.3 298 52.0
CsaV3_3G001860 Cucumis sativus L. HOM05D007134 ORTHO05D009004 1.1e-86 323.9 297 54.2
Ah.12g054890 Amaranthus hybridus HOM05D007134 ORTHO05D009004 1.9e-86 323.2 311 53.4
EL10Ac5g12144 Beta vulgaris HOM05D007134 ORTHO05D009004 1.9e-86 323.2 293 54.3
Carub.0004s1701 Capsella rubella HOM05D007134 ORTHO05D009004 2.5e-86 322.8 289 53.6
Nitab4.5_0001276g0070 Nicotiana tabacum HOM05D007134 ORTHO05D009004 2.5e-86 322.8 284 56.3
CARHR129460 Cardamine hirsuta HOM05D007134 ORTHO05D009004 7.3e-86 321.2 283 54.4
Thhalv10016981m.g Eutrema salsugineum HOM05D007134 ORTHO05D009004 7.3e-86 321.2 289 55.4
Lalb_Chr05g0220571 Lupinus albus HOM05D007134 ORTHO05D009004 9.6e-86 320.9 299 53.8
Aa31LG9G15330 Aethionema arabicum HOM05D007134 ORTHO05D009004 2.1e-85 319.7 297 52.5
Sp4g17520 Schrenkiella parvula HOM05D007134 ORTHO05D009004 2.1e-85 319.7 289 54.7
CDE04G0512 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 2.0e-83 313.2 304 53.3
DCAR_032214 Daucus carota HOM05D007134 ORTHO05D009004 2.0e-83 313.2 279 53.8
arahy.Tifrunner.gnm1.ann1.40JZG2 Arachis hypogaea HOM05D007134 ORTHO05D009004 4.4e-83 312.0 308 53.2
arahy.Tifrunner.gnm1.ann1.2XNM6Q Arachis hypogaea HOM05D007134 ORTHO05D009004 5.8e-83 311.6 308 52.9
CDE12G0960 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 7.6e-83 311.2 298 53.7
Lsat_1_v5_gn_6_64760 Lactuca sativa HOM05D007134 ORTHO05D009004 7.6e-83 311.2 295 52.2
Cc08_g02480 Coffea canephora HOM05D007134 ORTHO05D009004 1.1e-81 307.4 290 54.1
HanXRQChr06g0178411 Helianthus annuus HOM05D007134 ORTHO05D009004 1.9e-81 306.6 282 55.7
Oeu036071.3 Olea europaea HOM05D007134 ORTHO05D009004 1.6e-80 303.5 325 47.7
ECA233G0754 Erigeron canadensis HOM05D007134 ORTHO05D009004 2.1e-80 303.1 295 52.5
Nn6g33621 Nelumbo nucifera HOM05D007134 ORTHO05D009004 2.7e-80 302.8 254 58.3
Zm00001eb417090 Zea mays HOM05D007134 ORTHO05D009004 3.5e-80 302.4 294 50.7
SGA_v2.0_scaffold34G13941 Striga asiatica HOM05D007134 ORTHO05D009004 1.3e-79 300.4 292 54.8
MSTRG.6669 Avicennia marina HOM05D007134 ORTHO05D009004 1.1e-78 297.4 296 52.0
Rhsim11G0013400 Rhododendron simsii HOM05D007134 ORTHO05D009004 1.9e-78 296.6 430 40.2
Os06g0110100 Oryza sativa ssp. japonica HOM05D007134 ORTHO05D009004 3.6e-77 292.4 288 51.7
BcaC01g05731 Brassica carinata HOM05D007134 ORTHO05D009004 2.4e-76 289.7 274 52.9
PSO063G6706 Papaver somniferum HOM05D007134 ORTHO05D009004 3.1e-76 289.3 256 55.5
Hund11255 Selenicereus undatus HOM05D007134 ORTHO05D009004 2.0e-75 286.6 331 47.1
vmacro00339 Vaccinium macrocarpon HOM05D007134 ORTHO05D009004 2.0e-75 286.6 453 38.2
ATR0049G037 Amborella trichopoda HOM05D007134 ORTHO05D009004 5.8e-75 285.0 308 47.7
AUR62018733 Chenopodium quinoa HOM05D007134 ORTHO05D009004 2.9e-74 282.7 258 55.8
Migut.M00165 Erythranthe guttata HOM05D007134 ORTHO05D009004 5.4e-73 278.5 273 53.8
Gohir.A12G209200 Gossypium hirsutum HOM05D007134 ORTHO05D009004 5.4e-73 278.5 258 55.8
SalBow7G3039 Salvia bowleyana HOM05D007134 ORTHO05D009004 1.2e-72 277.3 294 51.7
SalBow7G1996 Salvia bowleyana HOM05D007134 ORTHO05D009004 2.3e-71 273.1 305 49.5
unitig_749.g14086 Utricularia gibba HOM05D007134 ORTHO05D009004 1.3e-69 267.3 282 47.5
Pp3c2_15970 Physcomitrium patens HOM05D007134 ORTHO05D009004 5.1e-55 218.8 293 38.9
QL12p006104 Quercus lobata HOM05D007134 ORTHO05D009004 1.9e-54 216.9 148 68.2
AagrBONN_evm.TU.Sc2ySwM_117.2263 Anthoceros agrestis HOM05D007134 ORTHO05D009004 8.2e-53 211.5 320 37.2
Medtr4g098510 Medicago truncatula HOM05D007134 ORTHO05D009004 4.5e-51 205.7 221 51.1
VMungo0251G0669 Vigna mungo HOM05D007134 ORTHO05D009004 1.9e-49 200.3 131 67.2
Pp3c1_31250 Physcomitrium patens HOM05D007134 ORTHO05D009004 7.7e-43 178.3 299 33.1
Pp3c2_10940 Physcomitrium patens HOM05D007134 ORTHO05D009004 3.0e-39 166.4 288 34.0
VMungo0251G0585 Vigna mungo HOM05D007134 ORTHO05D009004 6.7e-39 165.2 116 62.9
Cpa.g.sc71.65 Carica papaya HOM05D007134 ORTHO05D009004 4.1e-36 156.0 87 74.7
Pp3c17_17110 Physcomitrium patens HOM05D007134 ORTHO05D009004 7.2e-33 145.2 267 31.1
SEGI_12545 Sequoiadendron giganteum HOM05D007134 ORTHO05D009004 6.1e-32 142.1 109 60.6
Cre09.g398150 Chlamydomonas reinhardtii HOM05D007134 ORTHO05D009004 3.0e-07 60.1 88 35.2
Nn6g33134 Nelumbo nucifera HOM05D007134 ORTHO05D009004 9.8e-06 55.1 68 44.1


User provided reference genes

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