Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.3e-53 213.0 124 100.0
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.3e-53 213.0 124 98.4
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 5.0e-53 211.1 124 98.4
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.0e-53 211.1 124 98.4
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 6.5e-53 210.7 124 98.4
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.2e-52 208.0 124 98.4
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 2.9e-45 185.3 100 93.0
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 3.8e-45 184.9 100 92.0
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 3.8e-45 184.9 100 92.0
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.5e-44 182.2 109 98.2
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 2.1e-43 179.1 100 90.0
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 4.6e-43 177.9 100 90.0
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 4.6e-43 177.9 100 88.0
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 1.4e-42 176.4 100 87.0
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 1.4e-42 176.4 100 89.0
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 3.0e-42 175.3 100 89.0
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 3.0e-42 175.3 100 88.0
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 3.0e-42 175.3 100 88.0
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 3.0e-42 175.3 100 88.0
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 3.9e-42 174.9 100 89.0
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 1.5e-41 172.9 100 87.0
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 1.5e-41 172.9 100 87.0
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.5e-41 172.9 100 86.0
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 2.0e-41 172.6 100 87.0
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 2.0e-41 172.6 100 88.0
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 2.0e-41 172.6 100 87.0
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 2.5e-41 172.2 100 88.0
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 2.5e-41 172.2 100 88.0
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.5e-41 172.2 100 87.0
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 4.3e-41 171.4 100 85.0
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 5.7e-41 171.0 100 86.0
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 9.7e-41 170.2 100 85.0
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 9.7e-41 170.2 100 86.0
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.3e-40 169.9 99 87.9
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.7e-40 169.5 100 84.0
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 2.2e-40 169.1 100 85.0
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 2.8e-40 168.7 100 85.0
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 3.7e-40 168.3 100 84.0
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 3.7e-40 168.3 100 83.0
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 4.8e-40 167.9 100 85.0
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.8e-40 167.9 100 84.0
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.8e-40 167.9 100 84.0
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 4.8e-40 167.9 100 86.0
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 6.3e-40 167.5 100 85.0
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 8.2e-40 167.2 99 83.8
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 1.1e-39 166.8 100 83.0
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 1.4e-39 166.4 100 84.0
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 1.8e-39 166.0 100 84.0
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 2.4e-39 165.6 100 84.0
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 3.1e-39 165.2 100 83.0
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 3.1e-39 165.2 100 83.0
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 3.1e-39 165.2 100 83.0
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 3.1e-39 165.2 100 83.0
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 4.1e-39 164.9 100 84.0
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 4.1e-39 164.9 100 83.0
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 4.1e-39 164.9 100 83.0
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 4.1e-39 164.9 100 83.0
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 4.1e-39 164.9 100 83.0
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 5.3e-39 164.5 99 83.8
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 6.9e-39 164.1 100 81.0
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 9.1e-39 163.7 97 84.5
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 9.1e-39 163.7 100 80.0
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 9.1e-39 163.7 100 82.0
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 1.2e-38 163.3 99 82.8
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 1.2e-38 163.3 99 82.8
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 1.2e-38 163.3 99 83.8
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.5e-38 162.9 100 85.0
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 2.6e-38 162.2 99 82.8
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 2.6e-38 162.2 95 84.2
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.6e-38 162.2 97 82.5
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.6e-38 162.2 97 82.5
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 3.4e-38 161.8 100 82.0
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 4.5e-38 161.4 100 81.0
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 5.9e-38 161.0 100 80.0
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 5.9e-38 161.0 100 80.0
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 5.9e-38 161.0 100 80.0
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 7.7e-38 160.6 99 81.8
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 7.7e-38 160.6 99 81.8
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 7.7e-38 160.6 106 79.2
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 7.7e-38 160.6 100 80.0
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 7.7e-38 160.6 97 81.4
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 1.0e-37 160.2 99 81.8
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 1.0e-37 160.2 100 79.0
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.3e-37 159.8 100 79.0
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 1.7e-37 159.5 99 80.8
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.7e-37 159.5 99 80.8
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 1.7e-37 159.5 99 80.8
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 3.8e-37 158.3 100 78.0
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 6.5e-37 157.5 97 80.4
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 8.5e-37 157.1 99 79.8
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 1.4e-36 156.4 100 78.0
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 1.4e-36 156.4 100 78.0
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.9e-36 156.0 100 76.0
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 4.2e-36 154.8 100 78.0
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 5.5e-36 154.5 100 78.0
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 5.5e-36 154.5 100 78.0
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 5.5e-36 154.5 100 77.0
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 5.5e-36 154.5 100 77.0
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 5.5e-36 154.5 100 74.0
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 9.4e-36 153.7 100 76.0
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 9.4e-36 153.7 100 77.0
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 2.1e-35 152.5 99 77.8
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 2.1e-35 152.5 114 71.1
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 4.7e-35 151.4 100 74.0
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 6.1e-35 151.0 100 76.0
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 7.9e-35 150.6 90 82.2
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 1.0e-34 150.2 95 74.7
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 6.7e-34 147.5 100 74.0
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 2.6e-33 145.6 100 72.0
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 5.7e-33 144.4 100 72.0
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 7.4e-33 144.1 85 84.7
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 7.4e-33 144.1 99 72.7
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 9.7e-33 143.7 100 70.0
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 1.7e-32 142.9 100 72.0
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 1.7e-32 142.9 100 71.0
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 2.8e-32 142.1 85 82.4
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 2.8e-32 142.1 96 75.0
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 6.3e-32 141.0 100 74.0
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 1.2e-30 136.7 85 82.4
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 3.8e-29 131.7 84 76.2
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 8.5e-29 130.6 83 77.1
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 2.3e-26 122.5 85 71.8
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 3.7e-24 115.2 100 60.0
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 1.1e-23 113.6 102 56.9
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.4e-23 113.2 68 82.4
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 3.1e-23 112.1 68 80.9
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.2e-22 110.2 67 80.6
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 1.3e-21 106.7 68 76.5
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 1.3e-21 106.7 68 76.5
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.7e-21 106.3 69 76.8
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 3.8e-21 105.1 69 78.3
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 6.5e-21 104.4 70 74.3
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 6.5e-21 104.4 68 75.0
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 1.2e-19 100.1 98 51.0
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 1.6e-19 99.8 64 70.3
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 3.4e-17 92.0 74 67.6
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 8.3e-16 87.4 53 79.2
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.1e-15 87.0 73 65.8
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.1e-15 87.0 57 75.4
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 1.1e-15 87.0 100 53.0
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 1.8e-15 86.3 85 58.8
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.7e-14 82.4 68 67.6
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 1.5e-12 76.6 65 55.4
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 1.5e-12 76.6 100 43.0
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 7.2e-12 74.3 60 60.0
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 4.7e-11 71.6 106 42.5
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 6.1e-11 71.2 82 53.7
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 5.2e-10 68.2 53 64.2
RcHm_v2.0_Chr7g0211671 Rosa chinensis HOM05D003587 ORTHO05D004139 8.8e-10 67.4 38 86.8
RcHm_v2.0_Chr1g0327371 Rosa chinensis HOM05D001997 ORTHO05D005560 3.4e-09 65.5 37 86.5
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 7.5e-09 64.3 109 33.9
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 2.2e-08 62.8 74 50.0
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.1e-07 60.5 39 74.4
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 2.4e-07 59.3 31 87.1
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 3.1e-07 58.9 52 55.8
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 4.1e-07 58.5 31 87.1
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 4.1e-07 58.5 31 87.1
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.6e-06 56.6 38 73.7


User provided reference genes

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