Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0099 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.5e-175 619.4 315 100.0
FAN08G1160 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.4e-160 569.7 298 97.7
FAN13G2109 Fragaria x ananassa HOM05D005938 ORTHO05D007654 5.3e-160 567.8 298 97.7
FAN18G0122 Fragaria x ananassa HOM05D005938 ORTHO05D007654 5.9e-159 564.3 298 97.0
FvH4_5g15170 Fragaria vesca HOM05D005938 ORTHO05D007654 2.9e-158 562.0 298 96.6
RcHm_v2.0_Chr7g0181011 Rosa chinensis HOM05D005938 ORTHO05D007654 2.3e-139 499.2 299 86.6
Prupe.5G190900 Prunus persica HOM05D005938 ORTHO05D007654 6.7e-131 471.1 298 79.9
MD14G1198100 Malus domestica HOM05D005938 ORTHO05D007654 4.2e-125 451.8 299 77.6
MD06G1191700 Malus domestica HOM05D005938 ORTHO05D007654 8.0e-124 447.6 299 77.6
Atru.chr9.2268 Acer truncatum HOM05D005938 ORTHO05D007654 1.2e-114 417.2 295 71.9
QL10p016543 Quercus lobata HOM05D005938 ORTHO05D007654 2.2e-113 412.9 297 69.7
Lalb_Chr08g0235801 Lupinus albus HOM05D005938 ORTHO05D007654 2.4e-112 409.5 295 70.5
Gohir.D12G179280 Gossypium hirsutum HOM05D005938 ORTHO05D007654 3.1e-112 409.1 296 70.3
CsaV3_1G002270 Cucumis sativus L. HOM05D005938 ORTHO05D007654 9.2e-112 407.5 296 70.3
Actinidia34992 Actinidia chinensis HOM05D005938 ORTHO05D007654 1.2e-111 407.1 298 70.5
CiPaw.11G042800 Carya illinoinensis HOM05D005938 ORTHO05D007654 1.0e-110 404.1 294 69.0
Phvul.009G188150 Phaseolus vulgaris HOM05D005938 ORTHO05D007654 2.9e-110 402.5 298 69.1
MELO3C017167.2 Cucumis melo HOM05D005938 ORTHO05D007654 8.6e-110 401.0 296 69.9
Rhsim12G0157100 Rhododendron simsii HOM05D005938 ORTHO05D007654 8.6e-110 401.0 299 68.6
Glyma.06G192800 Glycine max HOM05D005938 ORTHO05D007654 1.5e-109 400.2 298 69.5
GSVIVG01008024001 Vitis vinifera HOM05D005938 ORTHO05D007654 1.9e-109 399.8 296 69.6
CANSAT80G1410 Cannabis sativa HOM05D005938 ORTHO05D007654 4.3e-109 398.7 297 68.7
Sed0010411 Sechium edule HOM05D005938 ORTHO05D007654 4.3e-109 398.7 296 70.3
Ca_13688_v3 Cicer arietinum L. HOM05D005938 ORTHO05D007654 7.3e-109 397.9 295 68.1
PGR083G1660 Punica granatum HOM05D005938 ORTHO05D007654 1.6e-108 396.7 311 65.6
CSS0017360 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 4.7e-108 395.2 289 70.6
CSS0040883 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 4.7e-108 395.2 289 70.6
Gohir.A12G176500 Gossypium hirsutum HOM05D005938 ORTHO05D007654 6.1e-108 394.8 296 67.9
Sc10g0009920 Simmondsia chinensis HOM05D005938 ORTHO05D007654 1.0e-107 394.0 298 67.1
Lj1g0012745 Lotus japonicus HOM05D005938 ORTHO05D007654 1.4e-107 393.7 295 67.5
Cfa018959 Carpinus fangiana HOM05D005938 ORTHO05D007654 2.3e-107 392.9 260 75.4
Ciclev10021191m.g Citrus clementina HOM05D005938 ORTHO05D007654 2.3e-107 392.9 301 68.4
TAR374G0085 Trochodendron aralioides HOM05D005938 ORTHO05D007654 3.0e-107 392.5 291 69.4
Nn3g17204 Nelumbo nucifera HOM05D005938 ORTHO05D007654 6.8e-107 391.3 295 66.4
COL.COLO4_24542 Corchorus olitorius HOM05D005938 ORTHO05D007654 1.5e-106 390.2 275 70.9
TAR622G1433 Trochodendron aralioides HOM05D005938 ORTHO05D007654 6.4e-105 384.8 269 72.5
vmacro16554 Vaccinium macrocarpon HOM05D005938 ORTHO05D007654 1.8e-104 383.3 330 62.4
Eucgr.A02632 Eucalyptus grandis HOM05D005938 ORTHO05D007654 7.0e-104 381.3 300 66.7
Hund09357 Selenicereus undatus HOM05D005938 ORTHO05D007654 4.6e-103 378.6 294 66.0
TPR.G11812 Trifolium pratense HOM05D005938 ORTHO05D007654 1.3e-102 377.1 293 65.5
arahy.Tifrunner.gnm1.ann1.KGI6NM Arachis hypogaea HOM05D005938 ORTHO05D007654 2.3e-102 376.3 295 65.4
arahy.Tifrunner.gnm1.ann1.VVHC1U Arachis hypogaea HOM05D005938 ORTHO05D007654 2.3e-102 376.3 295 65.4
Ah.02g113360 Amaranthus hybridus HOM05D005938 ORTHO05D007654 3.9e-102 375.6 250 74.4
Gorai.008G192300 Gossypium raimondii HOM05D005938 ORTHO05D007654 6.6e-102 374.8 295 65.8
Atru.BG.195.p Acer truncatum HOM05D005938 ORTHO05D007654 1.1e-101 374.0 251 75.3
Migut.D01830 Erythranthe guttata HOM05D005938 ORTHO05D007654 1.1e-101 374.0 289 66.4
TWI15G1099 Tripterygium wilfordii HOM05D005938 ORTHO05D007654 3.3e-101 372.5 250 74.4
BcaC08g46988 Brassica carinata HOM05D005938 ORTHO05D007654 1.2e-100 370.5 295 63.1
Cpa.g.c30141.1 Carica papaya HOM05D005938 ORTHO05D007654 1.2e-100 370.5 251 72.5
Sp5g29710 Schrenkiella parvula HOM05D005938 ORTHO05D007654 2.1e-100 369.8 294 62.9
ClCG06G016260 Citrullus lanatus HOM05D005938 ORTHO05D007654 3.6e-100 369.0 296 66.6
CARHR067810 Cardamine hirsuta HOM05D005938 ORTHO05D007654 4.7e-100 368.6 295 62.7
Cc04_g16920 Coffea canephora HOM05D005938 ORTHO05D007654 8.0e-100 367.9 292 64.4
PSO063G3647 Papaver somniferum HOM05D005938 ORTHO05D007654 1.4e-99 367.1 300 64.7
Duzib205G1012 Durio zibethinus HOM05D005938 ORTHO05D007654 1.8e-99 366.7 296 66.9
MSTRG.9633 Avicennia marina HOM05D005938 ORTHO05D007654 4.0e-99 365.5 294 63.6
AL2G34410 Arabidopsis lyrata HOM05D005938 ORTHO05D007654 5.2e-99 365.2 294 61.6
EL10Ac5g10981 Beta vulgaris HOM05D005938 ORTHO05D007654 6.8e-99 364.8 250 72.8
AUR62008387 Chenopodium quinoa HOM05D005938 ORTHO05D007654 6.8e-99 364.8 251 72.1
Thhalv10018904m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 6.8e-99 364.8 294 63.3
Potri.018G047400 Populus trichocarpa HOM05D005938 ORTHO05D007654 8.9e-99 364.4 261 70.5
SalBow7G2600 Salvia bowleyana HOM05D005938 ORTHO05D007654 1.2e-98 364.0 296 63.5
AUR62021711 Chenopodium quinoa HOM05D005938 ORTHO05D007654 2.6e-98 362.8 251 71.7
Carub.0002s2133 Capsella rubella HOM05D005938 ORTHO05D007654 3.4e-98 362.5 294 61.6
THA.LOC104812546 Tarenaya hassleriana HOM05D005938 ORTHO05D007654 4.4e-98 362.1 297 62.3
Lj9A462G75 Lonicera japonica HOM05D005938 ORTHO05D007654 5.8e-98 361.7 278 64.7
Thecc.03G084300 Theobroma cacao HOM05D005938 ORTHO05D007654 1.1e-96 357.5 297 64.0
BcaC08g46886 Brassica carinata HOM05D005938 ORTHO05D007654 1.9e-96 356.7 301 60.1
PGSC0003DMG400000598 Solanum tuberosum HOM05D005938 ORTHO05D007654 4.1e-96 355.5 294 62.6
A07p40340 Brassica napus HOM05D005938 ORTHO05D007654 5.4e-96 355.1 294 61.2
Psat5g187160 Pisum sativum HOM05D005938 ORTHO05D007654 2.0e-95 353.2 272 65.4
HanXRQChr05g0158101 Helianthus annuus HOM05D005938 ORTHO05D007654 1.0e-94 350.9 294 61.6
Sabra18G0045600 Salix brachista HOM05D005938 ORTHO05D007654 1.7e-94 350.1 252 69.4
CAN.G407.117 Capsicum annuum HOM05D005938 ORTHO05D007654 1.1e-93 347.4 294 61.9
Solyc03g116330.3 Solanum lycopersicum HOM05D005938 ORTHO05D007654 1.9e-93 346.7 294 61.6
Aa31LG7G3570 Aethionema arabicum HOM05D005938 ORTHO05D007654 2.5e-93 346.3 294 60.2
Dinv38693 Davidia involucrata HOM05D005938 ORTHO05D007654 3.3e-93 345.9 248 70.2
ECA246G4427 Erigeron canadensis HOM05D005938 ORTHO05D007654 5.6e-93 345.1 295 59.7
Nitab4.5_0004103g0010 Nicotiana tabacum HOM05D005938 ORTHO05D007654 5.6e-93 345.1 294 60.9
BraA07t31575Z Brassica rapa HOM05D005938 ORTHO05D007654 1.6e-92 343.6 315 57.5
unitig_744.g24387 Utricularia gibba HOM05D005938 ORTHO05D007654 2.8e-92 342.8 291 62.2
Manes.06G094000 Manihot esculenta HOM05D005938 ORTHO05D007654 8.1e-92 341.3 296 61.8
SGA_v2.0_scaffold114G31898 Striga asiatica HOM05D005938 ORTHO05D007654 1.4e-91 340.5 297 59.9
ATR0564G381 Amborella trichopoda HOM05D005938 ORTHO05D007654 1.5e-90 337.0 276 63.4
DCAR_021525 Daucus carota HOM05D005938 ORTHO05D007654 1.5e-90 337.0 296 61.1
Lsat_1_v5_gn_5_19401 Lactuca sativa HOM05D005938 ORTHO05D007654 5.8e-90 335.1 294 59.2
Oeu016169.1 Olea europaea HOM05D005938 ORTHO05D007654 7.5e-90 334.7 253 67.2
CDE02G0021 Ceratophyllum demersum HOM05D005938 ORTHO05D007654 3.7e-89 332.4 265 61.5
Peaxi162Scf00274g00846 Petunia axillaris HOM05D005938 ORTHO05D007654 8.3e-89 331.3 300 58.0
Nitab4.5_0002257g0140 Nicotiana tabacum HOM05D005938 ORTHO05D007654 1.1e-88 330.9 322 55.9
Aqoxy3G03351 Aquilegia oxysepala HOM05D005938 ORTHO05D007654 1.6e-87 327.0 271 63.8
Os08g0171000 Oryza sativa ssp. japonica HOM05D005938 ORTHO05D007654 1.3e-86 323.9 253 60.9
BcaC08g46884 Brassica carinata HOM05D005938 ORTHO05D007654 3.3e-85 319.3 331 53.2
Sopen03g035260 Solanum pennellii HOM05D005938 ORTHO05D007654 5.6e-85 318.5 242 65.3
SEGI_36934 Sequoiadendron giganteum HOM05D005938 ORTHO05D007654 6.2e-84 315.1 291 55.0
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 8.4e-81 304.7 370 51.6
C06p48680 Brassica napus HOM05D005938 ORTHO05D007654 3.5e-79 299.3 242 62.4
Aa31LG4G4790 Aethionema arabicum HOM05D005938 ORTHO05D007654 3.9e-78 295.8 234 64.5
BolC6t39901H Brassica oleracea HOM05D005938 ORTHO05D007654 1.5e-77 293.9 249 62.2
AT1G74530 Arabidopsis thaliana HOM05D005938 ORTHO05D007654 5.2e-75 285.4 242 62.0
Mapoly0002s0073 Marchantia polymorpha HOM05D005938 ORTHO05D007654 6.9e-75 285.0 251 59.0
SHI04241 Sapria himalayana HOM05D005938 ORTHO05D007654 2.0e-74 283.5 315 50.8
FAN10G3346 Fragaria x ananassa HOM05D005938 ORTHO05D007654 8.4e-73 278.1 146 95.9
Medtr0036s0320 Medicago truncatula HOM05D005938 ORTHO05D007654 1.5e-69 267.3 179 72.1
CSS0050188 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 3.6e-68 262.7 212 66.0
AagrBONN_evm.TU.Sc2ySwM_117.1670 Anthoceros agrestis HOM05D005938 ORTHO05D007654 1.9e-64 250.4 259 51.4
VMungo1309G2195 Vigna mungo HOM05D005938 ORTHO05D007654 2.3e-62 243.4 163 74.8
Pp3c17_15280 Physcomitrium patens HOM05D005938 ORTHO05D007654 1.5e-61 240.7 290 49.0
SMO270G0117 Selaginella moellendorffii HOM05D005938 ORTHO05D007654 4.0e-59 232.6 254 47.2
MBI02_g23681_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 3.8e-57 226.1 155 73.5
Hma1.2p1_0735F.1_g210490 Hydrangea macrophylla HOM05D005938 ORTHO05D007654 1.1e-56 224.6 153 72.5
FAN01G1759 Fragaria x ananassa HOM05D005938 ORTHO05D007654 9.6e-53 211.5 108 99.1
CBR_g66809 Chara braunii HOM05D005938 ORTHO05D007654 1.5e-50 204.1 270 39.6
Glyma.04G170700 Glycine max HOM05D005938 ORTHO05D007654 7.6e-50 201.8 161 63.4
Zm00001eb415000 Zea mays HOM05D005938 ORTHO05D007654 2.7e-47 193.4 214 52.3
FAN18G0131 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.1e-45 188.0 155 69.7
MCO16G029 Micromonas commoda HOM05D005938 ORTHO05D007654 3.8e-33 146.4 282 36.2
arahy.Tifrunner.gnm1.ann1.518D86 Arachis hypogaea HOM05D005938 ORTHO05D007654 5.0e-33 146.0 144 54.9
Medtr3g040450 Medicago truncatula HOM05D005938 ORTHO05D007654 1.2e-31 141.4 116 64.7
VMungo0019G0001 Vigna mungo HOM05D005938 ORTHO05D007654 2.6e-29 133.7 158 51.3
Prupe.5G190800 Prunus persica HOM05D005938 ORTHO05D007654 2.2e-28 130.6 85 75.3
MBI15_g27838_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 4.8e-28 129.4 154 50.6
Cre12.g513300 Chlamydomonas reinhardtii HOM05D005938 ORTHO05D007654 9.1e-27 125.2 226 36.3
MD17G1094500 Malus domestica HOM05D005938 ORTHO05D007654 9.1e-27 125.2 79 79.7
QL07p001114 Quercus lobata HOM05D005938 ORTHO05D007654 9.4e-24 115.2 159 47.8
QL02p071402 Quercus lobata HOM05D005938 ORTHO05D028155 1.1e-21 108.2 69 71.0
QL12p034017 Quercus lobata HOM05D000176 ORTHO05D000106 3.3e-21 106.7 126 48.4
CSS0038577 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.7e-20 104.4 73 69.9
PRCOL_00003564 Prasinoderma coloniale HOM05D005938 ORTHO05D007654 1.8e-19 100.9 287 30.7
Thhalv10000377m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 2.7e-07 60.5 91 40.7


User provided reference genes

Program Settings