Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.0e-146 521.9 288 100.0
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 5.8e-129 464.5 288 92.7
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 5.8e-129 464.5 288 92.7
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.9e-128 461.5 288 92.4
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 5.4e-127 458.0 302 82.5
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 1.6e-123 446.4 294 87.8
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 2.4e-106 389.4 293 78.2
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 5.8e-105 384.8 293 77.8
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.3e-93 346.3 199 88.4
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 6.7e-93 344.7 298 64.8
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 7.4e-92 341.3 296 70.3
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 9.6e-92 340.9 295 69.5
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 9.6e-92 340.9 295 69.5
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 9.6e-92 340.9 295 69.5
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 1.1e-90 337.4 298 72.8
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 3.1e-90 335.9 285 69.1
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 1.5e-89 333.6 283 70.0
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 2.0e-89 333.2 212 76.9
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 2.0e-89 333.2 217 84.3
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 2.2e-88 329.7 289 72.7
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 2.2e-88 329.7 214 88.8
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 2.2e-88 329.7 285 69.8
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 2.9e-88 329.3 289 72.7
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 3.8e-88 328.9 288 70.5
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 4.9e-88 328.6 270 68.9
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 4.9e-88 328.6 284 70.8
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 6.5e-88 328.2 284 70.8
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 8.4e-88 327.8 270 68.9
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 1.1e-87 327.4 290 67.6
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 1.4e-87 327.0 290 69.7
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 1.4e-87 327.0 259 68.3
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 2.5e-87 326.2 294 69.4
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 2.5e-87 326.2 265 70.2
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 4.2e-87 325.5 247 74.5
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 5.5e-87 325.1 214 87.9
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 9.3e-87 324.3 287 67.6
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 1.6e-86 323.6 271 63.1
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 4.6e-86 322.0 210 76.2
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 7.9e-86 321.2 247 74.1
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 2.3e-85 319.7 210 77.1
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 3.0e-85 319.3 221 78.3
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 3.0e-85 319.3 303 64.0
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 3.0e-85 319.3 285 68.8
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 5.1e-85 318.5 244 67.6
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 1.9e-84 316.6 212 74.5
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 1.9e-84 316.6 223 70.9
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 2.5e-84 316.2 240 69.2
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 3.3e-84 315.8 223 77.6
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 4.3e-84 315.5 242 67.8
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 4.3e-84 315.5 212 73.6
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 4.3e-84 315.5 218 71.6
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 1.6e-83 313.5 212 77.8
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 2.1e-83 313.2 291 66.0
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 2.8e-83 312.8 241 66.4
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 3.7e-83 312.4 210 73.3
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 1.1e-82 310.8 224 70.5
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 2.4e-82 309.7 234 75.6
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 2.4e-82 309.7 226 78.3
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 6.9e-82 308.1 266 68.8
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 9.0e-82 307.8 222 74.8
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 1.2e-81 307.4 287 66.6
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.2e-81 307.4 238 68.5
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 5.9e-81 305.1 233 73.4
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 1.0e-80 304.3 285 59.3
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 2.2e-80 303.1 211 78.7
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 2.9e-80 302.8 288 62.5
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 6.5e-80 301.6 211 78.2
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 8.5e-80 301.2 254 65.4
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 1.1e-79 300.8 283 61.1
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.4e-79 300.4 239 65.3
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 1.9e-79 300.1 206 81.1
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 7.2e-79 298.1 210 80.5
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 7.2e-79 298.1 288 58.3
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 9.3e-79 297.7 256 60.9
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 1.2e-78 297.4 214 67.8
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 3.9e-77 292.4 268 66.0
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 8.7e-77 291.2 294 59.2
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 9.7e-76 287.7 261 64.4
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.6e-75 287.0 237 72.6
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.1e-74 284.3 199 80.4
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 1.1e-74 284.3 211 65.4
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 2.4e-74 283.1 224 65.2
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 4.1e-74 282.3 243 59.3
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 5.3e-74 282.0 210 75.7
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 6.9e-74 281.6 214 70.1
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 4.5e-73 278.9 240 64.2
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.2e-72 276.6 186 73.1
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 2.9e-72 276.2 206 80.1
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 1.9e-71 273.5 262 61.1
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 5.5e-71 271.9 205 69.8
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 2.1e-70 270.0 179 84.9
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 2.7e-70 269.6 214 67.3
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 1.8e-69 266.9 211 62.6
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 2.3e-69 266.5 212 62.7
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 6.7e-69 265.0 244 57.0
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 9.7e-68 261.2 216 62.0
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 2.8e-67 259.6 179 73.2
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 1.1e-66 257.7 139 84.9
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 1.8e-66 256.9 226 72.6
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 2.9e-64 249.6 226 59.3
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 5.5e-63 245.4 211 61.1
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 1.2e-62 244.2 311 48.2
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 1.6e-62 243.8 244 61.5
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 4.7e-62 242.3 231 68.4
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 8.0e-54 214.9 133 75.9
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 3.2e-47 193.0 202 57.9
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.2e-40 170.2 156 58.3
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.6e-38 164.1 134 64.2
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 2.5e-31 140.2 176 43.2
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 8.3e-27 125.2 177 49.7
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 3.9e-24 116.3 171 60.2
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 4.7e-22 109.4 65 76.9
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 8.0e-22 108.6 179 38.5
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 2.3e-21 107.1 90 65.6
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 1.2e-20 104.8 101 61.4
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 4.4e-20 102.8 112 53.6
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.6e-17 92.8 74 62.2
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.0e-16 91.7 131 35.9
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 2.3e-16 90.5 122 49.2
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 3.3e-15 86.7 113 47.8
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 5.6e-15 85.9 107 41.1
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 1.8e-13 80.9 55 69.1
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 8.3e-11 72.0 53 75.5
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 4.1e-10 69.7 79 55.7
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.0e-08 65.1 150 33.3
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 1.0e-08 65.1 138 32.6
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.1e-07 61.6 140 30.0
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.5e-07 60.5 123 34.1
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 2.5e-07 60.5 139 30.9
Cpa.g.sc685.1 Carica papaya HOM05D006234 ORTHO05D007813 4.3e-07 59.7 109 43.1
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 4.3e-07 59.7 137 31.4
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 5.6e-07 59.3 110 32.7
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.2e-06 58.2 112 35.7
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.6e-06 57.8 136 27.9
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 1.6e-06 57.8 112 31.2
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 1.6e-06 57.8 30 83.3
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.8e-06 57.0 116 33.6
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 2.8e-06 57.0 139 30.9
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 8.1e-06 55.5 136 30.9
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 8.1e-06 55.5 134 28.4


User provided reference genes

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