Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0090 Fragaria x ananassa HOM05D001599 ORTHO05D005517 7.4e-107 390.6 200 100.0
RcHm_v2.0_Chr7g0190491 Rosa chinensis HOM05D001599 ORTHO05D005517 2.0e-35 153.3 183 56.8
MD06G1144200 Malus domestica HOM05D001599 ORTHO05D005517 1.0e-23 114.4 176 43.8
Gorai.001G060000 Gossypium raimondii HOM05D001599 ORTHO05D005517 4.7e-21 105.5 190 41.6
COL.COLO4_28079 Corchorus olitorius HOM05D001599 ORTHO05D005517 6.2e-21 105.1 174 43.1
Gohir.D07G056500 Gossypium hirsutum HOM05D001599 ORTHO05D005517 6.2e-21 105.1 188 40.4
Sabra15G0114800 Salix brachista HOM05D001599 ORTHO05D005517 6.8e-20 101.7 179 42.5
Thecc.03G126400 Theobroma cacao HOM05D001599 ORTHO05D005517 5.8e-19 98.6 171 43.3
Potri.015G093200 Populus trichocarpa HOM05D001599 ORTHO05D005517 7.5e-19 98.2 178 41.0
Gohir.A07G052000 Gossypium hirsutum HOM05D001599 ORTHO05D005517 1.7e-18 97.1 190 41.1
Dinv04867 Davidia involucrata HOM05D001599 ORTHO05D005517 4.1e-17 92.4 176 41.5
Cpa.g.sc13.145 Carica papaya HOM05D001599 ORTHO05D005517 7.1e-17 91.7 172 40.7
Rhsim12G0173600 Rhododendron simsii HOM05D001599 ORTHO05D005517 9.2e-17 91.3 180 40.0
Ciclev10021683m.g Citrus clementina HOM05D001599 ORTHO05D005517 7.8e-16 88.2 179 40.8
Sc03g0006650 Simmondsia chinensis HOM05D001599 ORTHO05D005517 1.7e-15 87.0 149 42.3
Duzib205G0652 Durio zibethinus HOM05D001599 ORTHO05D005517 2.3e-15 86.7 181 36.5
TWI39G0440 Tripterygium wilfordii HOM05D001599 ORTHO05D005517 3.9e-15 85.9 183 37.7
GSVIVG01008511001 Vitis vinifera HOM05D001599 ORTHO05D005517 3.9e-15 85.9 167 40.7
Manes.14G053000 Manihot esculenta HOM05D001599 ORTHO05D005517 5.1e-15 85.5 186 40.9
Sed0017280 Sechium edule HOM05D001599 ORTHO05D005517 5.6e-14 82.0 179 38.0
Cfa007247 Carpinus fangiana HOM05D001599 ORTHO05D005517 7.3e-14 81.6 156 40.4
CANSAT64G1266 Cannabis sativa HOM05D001599 ORTHO05D005517 9.5e-14 81.3 184 36.4
Hund02426 Selenicereus undatus HOM05D001599 ORTHO05D005517 1.2e-13 80.9 181 37.6
Nitab4.5_0006819g0010 Nicotiana tabacum HOM05D001599 ORTHO05D005517 2.1e-13 80.1 166 38.0
Ca_18152_v3 Cicer arietinum L. HOM05D001599 ORTHO05D005517 3.6e-13 79.3 164 36.6
Nn4g22379 Nelumbo nucifera HOM05D001599 ORTHO05D005517 3.6e-13 79.3 173 37.0
CiPaw.12G040700 Carya illinoinensis HOM05D001599 ORTHO05D005517 6.2e-13 78.6 190 36.3
Nitab4.5_0002887g0050 Nicotiana tabacum HOM05D001599 ORTHO05D005517 6.2e-13 78.6 135 40.0
Manes.17G104800 Manihot esculenta HOM05D001599 ORTHO05D005517 8.1e-13 78.2 189 36.5
Cfa018845 Carpinus fangiana HOM05D001599 ORTHO05D005517 1.1e-12 77.8 179 39.7
Lj1g0000504 Lotus japonicus HOM05D001599 ORTHO05D005517 1.1e-12 77.8 171 39.2
EL10Ac2g03203 Beta vulgaris HOM05D001599 ORTHO05D005517 1.4e-12 77.4 163 36.2
Lj9A477T58 Lonicera japonica HOM05D001599 ORTHO05D005517 1.4e-12 77.4 187 35.3
MBI08_g17169_MAGBIO Magnolia biondii HOM05D001599 ORTHO05D005517 1.4e-12 77.4 152 38.2
QL05p062226 Quercus lobata HOM05D001599 ORTHO05D005517 1.8e-12 77.0 187 39.0
Solyc03g005050.3 Solanum lycopersicum HOM05D001599 ORTHO05D005517 1.8e-12 77.0 165 38.8
Sopen03g001060 Solanum pennellii HOM05D001599 ORTHO05D000001 1.8e-12 77.0 165 38.8
Haze_14845 Corylus avellana HOM05D001599 ORTHO05D005517 2.4e-12 76.6 180 36.7
CSS0021261 Camellia sinensis var. sinensis HOM05D001599 ORTHO05D005517 3.1e-12 76.3 175 36.0
Peaxi162Scf00700g00142 Petunia axillaris HOM05D001599 ORTHO05D005517 3.1e-12 76.3 167 34.7
Duzib147G1152 Durio zibethinus HOM05D001599 ORTHO05D005517 4.0e-12 75.9 148 36.5
Nitab4.5_0000559g0240 Nicotiana tabacum HOM05D001599 ORTHO05D005517 4.0e-12 75.9 179 36.9
TAR374G0283 Trochodendron aralioides HOM05D001599 ORTHO05D005517 4.0e-12 75.9 175 36.0
CSS0011435 Camellia sinensis var. sinensis HOM05D001599 ORTHO05D005517 5.2e-12 75.5 175 35.4
HanXRQChr09g0256091 Helianthus annuus HOM05D001599 ORTHO05D005517 5.2e-12 75.5 171 37.4
GSVIVG01001813001 Vitis vinifera HOM05D001599 ORTHO05D005517 6.8e-12 75.1 120 45.0
Cc07_g00650 Coffea canephora HOM05D001599 ORTHO05D005517 8.9e-12 74.7 165 34.5
PGSC0003DMG400013379 Solanum tuberosum HOM05D001599 ORTHO05D005517 1.2e-11 74.3 144 36.8
Atru.chr6.2525 Acer truncatum HOM05D001599 ORTHO05D005517 1.5e-11 73.9 150 39.3
Haze_07238 Corylus avellana HOM05D001599 ORTHO05D005517 1.5e-11 73.9 196 34.7
MELO3C014867.2 Cucumis melo HOM05D001599 ORTHO05D005517 1.5e-11 73.9 145 40.0
Potri.001G333100 Populus trichocarpa HOM05D001599 ORTHO05D005517 1.5e-11 73.9 179 36.9
TAR622G1171 Trochodendron aralioides HOM05D001599 ORTHO05D005517 1.5e-11 73.9 168 35.7
Peaxi162Scf00420g00444 Petunia axillaris HOM05D001599 ORTHO05D005517 2.0e-11 73.6 159 36.5
Sabra16G0214300 Salix brachista HOM05D001599 ORTHO05D005517 2.0e-11 73.6 181 34.8
FvH4_6g53130 Fragaria vesca HOM05D001599 ORTHO05D005517 2.6e-11 73.2 160 35.6
FAN09G2664 Fragaria x ananassa HOM05D001599 ORTHO05D005517 2.6e-11 73.2 160 35.6
vmacro16668 Vaccinium macrocarpon HOM05D001599 ORTHO05D005517 2.6e-11 73.2 88 48.9
COL.COLO4_08740 Corchorus olitorius HOM05D001599 ORTHO05D005517 3.4e-11 72.8 173 33.5
FAN14G0076 Fragaria x ananassa HOM05D001599 ORTHO05D005517 3.4e-11 72.8 124 37.1
QL10p004219 Quercus lobata HOM05D001599 ORTHO05D005517 3.4e-11 72.8 189 38.1
Solyc02g093990.4 Solanum lycopersicum HOM05D001599 ORTHO05D005517 3.4e-11 72.8 143 36.4
DCAR_015087 Daucus carota HOM05D001599 ORTHO05D005517 4.4e-11 72.4 172 36.6
Glyma.16G059400 Glycine max HOM05D001599 ORTHO05D005517 4.4e-11 72.4 167 35.9
arahy.Tifrunner.gnm1.ann1.THM6KE Arachis hypogaea HOM05D001599 ORTHO05D005517 5.8e-11 72.0 117 41.0
CAN.G1965.16 Capsicum annuum HOM05D001599 ORTHO05D005517 5.8e-11 72.0 118 40.7
CsaV3_3G027210 Cucumis sativus L. HOM05D001599 ORTHO05D005517 5.8e-11 72.0 174 35.6
FAN05G1313 Fragaria x ananassa HOM05D001599 ORTHO05D005517 5.8e-11 72.0 160 35.0
Sopen02g038640 Solanum pennellii HOM05D001599 ORTHO05D005517 5.8e-11 72.0 145 36.6
Ah.10g032570 Amaranthus hybridus HOM05D001599 ORTHO05D005517 7.6e-11 71.6 162 38.3
Lju41C51T12 Lonicera japonica HOM05D001599 ORTHO05D005517 9.9e-11 71.2 164 34.1
Psat3g176120 Pisum sativum HOM05D001599 ORTHO05D005517 9.9e-11 71.2 140 37.1
MSTRG.24085 Avicennia marina HOM05D001599 ORTHO05D005517 1.3e-10 70.9 163 36.2
Ciclev10016237m.g Citrus clementina HOM05D001599 ORTHO05D005517 1.3e-10 70.9 177 39.0
ClCG05G013350 Citrullus lanatus HOM05D001599 ORTHO05D005517 1.7e-10 70.5 173 35.3
ECA232G4051 Erigeron canadensis HOM05D001599 ORTHO05D005517 1.7e-10 70.5 138 39.1
Hma1.2p1_0279F.1_g112590 Hydrangea macrophylla HOM05D001599 ORTHO05D005517 1.7e-10 70.5 163 38.0
Migut.H00008 Erythranthe guttata HOM05D001599 ORTHO05D005517 2.2e-10 70.1 163 35.6
TWI12G0332 Tripterygium wilfordii HOM05D001599 ORTHO05D005517 2.2e-10 70.1 190 34.2
Cpa.g.c33526 Carica papaya HOM05D001599 ORTHO05D005517 3.8e-10 69.3 131 38.2
CiPaw.03G053300 Carya illinoinensis HOM05D001599 ORTHO05D005517 3.8e-10 69.3 166 36.1
Sed0016418 Sechium edule HOM05D001599 ORTHO05D005517 3.8e-10 69.3 168 35.7
arahy.Tifrunner.gnm1.ann1.G7F7H8 Arachis hypogaea HOM05D001599 ORTHO05D005517 4.9e-10 68.9 105 41.0
Oeu035214.1 Olea europaea HOM05D001599 ORTHO05D005517 4.9e-10 68.9 161 36.0
QL10p004214 Quercus lobata HOM05D001599 ORTHO05D005517 4.9e-10 68.9 200 36.5
SalBow1G1605 Salvia bowleyana HOM05D001599 ORTHO05D005517 4.9e-10 68.9 113 42.5
SalBow1G3064 Salvia bowleyana HOM05D001599 ORTHO05D005517 4.9e-10 68.9 113 42.5
Dinv33355 Davidia involucrata HOM05D001599 ORTHO05D005517 6.4e-10 68.6 47 70.2
Oeu013647.1 Olea europaea HOM05D001599 ORTHO05D005517 6.4e-10 68.6 174 31.6
QL02p071905 Quercus lobata HOM05D001599 ORTHO05D005517 6.4e-10 68.6 156 36.5
Hund13054 Selenicereus undatus HOM05D001599 ORTHO05D005517 6.4e-10 68.6 153 34.6
Aqoxy3G01488 Aquilegia oxysepala HOM05D001599 ORTHO05D005517 8.4e-10 68.2 117 40.2
MSTRG.3089 Avicennia marina HOM05D001599 ORTHO05D005517 8.4e-10 68.2 65 53.8
Gohir.A07G226800 Gossypium hirsutum HOM05D001599 ORTHO05D005517 8.4e-10 68.2 174 32.8
QL05p062231 Quercus lobata HOM05D001599 ORTHO05D005517 8.4e-10 68.2 205 33.7
Aa31LG5G10960 Aethionema arabicum HOM05D001599 ORTHO05D005517 1.1e-09 67.8 172 34.9
Manes.15G158900 Manihot esculenta HOM05D001599 ORTHO05D005517 1.1e-09 67.8 180 35.0
Rhsim10G0008200 Rhododendron simsii HOM05D001599 ORTHO05D005517 1.1e-09 67.8 132 40.2
RcHm_v2.0_Chr2g0175001 Rosa chinensis HOM05D001599 ORTHO05D005517 1.1e-09 67.8 119 36.1
CSS0029900 Camellia sinensis var. sinensis HOM05D001599 ORTHO05D005517 1.4e-09 67.4 176 34.7
Glyma.19G088000 Glycine max HOM05D001599 ORTHO05D005517 1.4e-09 67.4 117 39.3
Oeu013950.1 Olea europaea HOM05D001599 ORTHO05D005517 1.9e-09 67.0 47 61.7
PSO017G0442 Papaver somniferum HOM05D001599 ORTHO05D005517 1.9e-09 67.0 58 58.6
PSO478G1423 Papaver somniferum HOM05D001599 ORTHO05D005517 1.9e-09 67.0 58 58.6
Phvul.001G095650 Phaseolus vulgaris HOM05D001599 ORTHO05D005517 1.9e-09 67.0 121 38.8
Sp3g00240 Schrenkiella parvula HOM05D001599 ORTHO05D005517 1.9e-09 67.0 174 35.1
vmacro05942 Vaccinium macrocarpon HOM05D001599 ORTHO05D005517 1.9e-09 67.0 58 58.6
Zm00001eb261190 Zea mays HOM05D001599 ORTHO05D005517 1.9e-09 67.0 136 40.4
Gohir.D07G234000 Gossypium hirsutum HOM05D001599 ORTHO05D005517 3.2e-09 66.2 174 32.8
Gorai.001G269400 Gossypium raimondii HOM05D001599 ORTHO05D005517 3.2e-09 66.2 174 32.8
Ah.11g044850 Amaranthus hybridus HOM05D001599 ORTHO05D005517 5.4e-09 65.5 43 65.1
Actinidia36184 Actinidia chinensis HOM05D001599 ORTHO05D005517 7.1e-09 65.1 47 66.0
BraA03t12402Z Brassica rapa HOM05D001599 ORTHO05D005517 7.1e-09 65.1 163 36.8
CARHR075110 Cardamine hirsuta HOM05D001599 ORTHO05D005517 7.1e-09 65.1 176 34.7
TPR.G38326 Trifolium pratense HOM05D001599 ORTHO05D005517 7.1e-09 65.1 165 33.3
VMungo1383G2239 Vigna mungo HOM05D001599 ORTHO05D005517 7.1e-09 65.1 166 33.7
CAN.G473.84 Capsicum annuum HOM05D001599 ORTHO05D005517 9.2e-09 64.7 143 37.8
AUR62025918 Chenopodium quinoa HOM05D001599 ORTHO05D005517 9.2e-09 64.7 54 57.4
FAN02G0281 Fragaria x ananassa HOM05D001599 ORTHO05D005517 9.2e-09 64.7 49 61.2
SGA_v2.0_scaffold18G08213 Striga asiatica HOM05D001599 ORTHO05D005517 9.2e-09 64.7 146 32.9
A03p32320 Brassica napus HOM05D001599 ORTHO05D005517 1.2e-08 64.3 163 36.8
CDE02G4001 Ceratophyllum demersum HOM05D001599 ORTHO05D005517 1.2e-08 64.3 47 66.0
Gorai.012G088300 Gossypium raimondii HOM05D001599 ORTHO05D005517 1.2e-08 64.3 179 36.3
unitig_0.g1945 Utricularia gibba HOM05D001599 ORTHO05D005517 1.2e-08 64.3 174 35.6
Actinidia05908 Actinidia chinensis HOM05D001599 ORTHO05D005517 2.1e-08 63.5 121 38.0
Thhalv10021323m.g Eutrema salsugineum HOM05D001599 ORTHO05D005517 2.1e-08 63.5 178 34.8
MD17G1014400 Malus domestica HOM05D001599 ORTHO05D005517 2.1e-08 63.5 117 36.8
AL3G10310 Arabidopsis lyrata HOM05D001599 ORTHO05D005517 3.5e-08 62.8 168 34.5
CANSAT80G2393 Cannabis sativa HOM05D001599 ORTHO05D005517 3.5e-08 62.8 75 49.3
Lalb_Chr14g0363201 Lupinus albus HOM05D001599 ORTHO05D005517 3.5e-08 62.8 138 37.0
Os08g0118900 Oryza sativa ssp. japonica HOM05D001599 ORTHO05D005517 3.5e-08 62.8 170 32.9
Thecc.04G031100 Theobroma cacao HOM05D001599 ORTHO05D005517 3.5e-08 62.8 178 33.1
Lsat_1_v5_gn_4_185320 Lactuca sativa HOM05D001599 ORTHO05D005517 6.0e-08 62.0 165 35.2
AT3G01820 Arabidopsis thaliana HOM05D001599 ORTHO05D005517 7.8e-08 61.6 172 33.7
PGR083G1002 Punica granatum HOM05D001599 ORTHO05D005517 7.8e-08 61.6 175 32.0
Duzib187G0722 Durio zibethinus HOM05D001599 ORTHO05D005517 1.0e-07 61.2 175 32.0
HPP92_005417 Vanilla planifolia HOM05D001599 ORTHO05D005517 1.3e-07 60.8 128 35.2
C03p39370 Brassica napus HOM05D001599 ORTHO05D005517 1.7e-07 60.5 45 64.4
MD09G1014300 Malus domestica HOM05D001599 ORTHO05D005517 1.7e-07 60.5 118 37.3
AUR62029638 Chenopodium quinoa HOM05D001599 ORTHO05D005517 2.3e-07 60.1 47 61.7
Prupe.3G303400 Prunus persica HOM05D001599 ORTHO05D005517 2.3e-07 60.1 128 32.8
Eucgr.J02317 Eucalyptus grandis HOM05D001599 ORTHO05D005517 3.0e-07 59.7 172 33.1
Eucgr.L02910 Eucalyptus grandis HOM05D001599 ORTHO05D005517 3.0e-07 59.7 172 33.1
SHI43493 Sapria himalayana HOM05D001599 ORTHO05D005517 3.0e-07 59.7 57 49.1
Carub.0003s0024 Capsella rubella HOM05D001599 ORTHO05D005517 6.6e-07 58.5 155 32.9
Gohir.D04G078400 Gossypium hirsutum HOM05D001599 ORTHO05D005517 6.6e-07 58.5 177 33.9
AUR62041780 Chenopodium quinoa HOM05D001599 ORTHO05D003184 8.7e-07 58.2 74 45.9
BolC3t16206H Brassica oleracea HOM05D001599 ORTHO05D005517 1.1e-06 57.8 163 34.4
ATR0686G171 Amborella trichopoda HOM05D001599 ORTHO05D005517 2.5e-06 56.6 49 59.2
THA.LOC104802376 Tarenaya hassleriana HOM05D001599 ORTHO05D005517 3.3e-06 56.2 168 34.5
Eucgr.K03197 Eucalyptus grandis HOM05D001599 ORTHO05D003184 5.6e-06 55.5 79 40.5
Gohir.A05G339900 Gossypium hirsutum HOM05D001599 ORTHO05D005517 5.6e-06 55.5 169 32.0
MBI06_g26877_MAGBIO Magnolia biondii HOM05D001599 ORTHO05D003184 5.6e-06 55.5 79 40.5
Medtr1g067050 Medicago truncatula HOM05D001599 ORTHO05D003184 7.3e-06 55.1 79 40.5
TAR636G1763 Trochodendron aralioides HOM05D001599 ORTHO05D003184 9.6e-06 54.7 79 41.8


User provided reference genes

Program Settings