Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 4.4e-52 207.6 99 100.0
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 7.7e-49 196.8 98 95.9
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 5.4e-26 120.9 57 96.5
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 5.0e-24 114.4 55 94.5
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.1e-23 113.2 52 100.0
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 1.2e-22 109.8 54 92.6
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 1.6e-22 109.4 55 89.1
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 1.6e-22 109.4 56 89.3
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 1.6e-22 109.4 56 89.3
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 2.1e-22 109.0 53 92.5
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 2.1e-22 109.0 53 92.5
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 2.1e-22 109.0 53 92.5
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 2.8e-22 108.6 59 88.1
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 6.2e-22 107.5 53 90.6
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 1.8e-21 105.9 53 88.7
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 2.3e-21 105.5 53 88.7
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 2.3e-21 105.5 54 87.0
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 4.0e-21 104.8 54 87.0
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 5.2e-21 104.4 53 88.7
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 5.2e-21 104.4 53 88.7
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 8.9e-21 103.6 54 83.3
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 1.2e-20 103.2 55 83.6
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 1.2e-20 103.2 55 83.6
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 1.2e-20 103.2 55 83.6
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.5e-20 102.8 55 81.8
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 2.0e-20 102.4 53 83.0
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 2.0e-20 102.4 53 83.0
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 2.0e-20 102.4 67 70.1
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 2.0e-20 102.4 54 85.2
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 3.4e-20 101.7 54 81.5
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 3.4e-20 101.7 53 86.8
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 3.4e-20 101.7 67 68.7
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 7.5e-20 100.5 80 62.5
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 9.8e-20 100.1 54 81.5
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 1.7e-19 99.4 53 83.0
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 1.7e-19 99.4 53 83.0
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 2.2e-19 99.0 56 80.4
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 2.2e-19 99.0 54 81.5
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 2.9e-19 98.6 53 81.1
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 2.9e-19 98.6 53 81.1
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 2.9e-19 98.6 53 81.1
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 2.9e-19 98.6 53 79.2
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 3.7e-19 98.2 53 83.0
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 3.7e-19 98.2 67 70.1
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 4.9e-19 97.8 54 83.3
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 6.4e-19 97.4 54 81.5
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 6.4e-19 97.4 54 77.8
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 6.4e-19 97.4 46 93.5
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 6.4e-19 97.4 60 73.3
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 6.4e-19 97.4 60 73.3
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 8.3e-19 97.1 54 79.6
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 8.3e-19 97.1 66 66.7
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 1.1e-18 96.7 53 79.2
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 1.1e-18 96.7 53 79.2
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 1.1e-18 96.7 53 79.2
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 1.1e-18 96.7 53 79.2
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 1.1e-18 96.7 53 79.2
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 1.1e-18 96.7 54 79.6
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 1.1e-18 96.7 53 79.2
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 1.1e-18 96.7 53 79.2
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 1.1e-18 96.7 53 79.2
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 1.4e-18 96.3 54 77.8
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 1.4e-18 96.3 53 79.2
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 1.4e-18 96.3 54 77.8
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 1.4e-18 96.3 54 77.8
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 1.4e-18 96.3 54 77.8
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 1.4e-18 96.3 54 77.8
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 1.4e-18 96.3 54 77.8
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.4e-18 96.3 53 79.2
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.4e-18 96.3 54 77.8
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 1.4e-18 96.3 71 66.2
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.4e-18 96.3 60 71.7
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.9e-18 95.9 55 76.4
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 1.9e-18 95.9 50 84.0
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 1.9e-18 95.9 54 75.9
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 1.9e-18 95.9 54 75.9
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 2.4e-18 95.5 54 75.9
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 2.4e-18 95.5 48 87.5
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 3.2e-18 95.1 58 72.4
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 3.2e-18 95.1 53 79.2
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 3.2e-18 95.1 53 77.4
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 3.2e-18 95.1 54 77.8
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 3.2e-18 95.1 55 74.5
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 3.2e-18 95.1 53 79.2
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 4.1e-18 94.7 60 68.3
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 4.1e-18 94.7 57 77.2
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 4.1e-18 94.7 57 78.9
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 5.4e-18 94.4 59 72.9
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 5.4e-18 94.4 53 79.2
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 5.4e-18 94.4 58 70.7
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 9.2e-18 93.6 61 72.1
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 9.2e-18 93.6 54 74.1
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 1.2e-17 93.2 54 72.2
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 2.7e-17 92.0 53 75.5
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 2.7e-17 92.0 61 72.1
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 3.5e-17 91.7 48 85.4
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 4.6e-17 91.3 51 78.4
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 4.6e-17 91.3 51 78.4
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 7.8e-17 90.5 53 73.6
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 2.3e-16 89.0 57 73.7
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 3.0e-16 88.6 45 88.9
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 1.1e-15 86.7 51 74.5
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 1.1e-15 86.7 51 74.5
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 1.9e-15 85.9 45 84.4
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.9e-15 85.9 45 84.4
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 4.3e-15 84.7 63 63.5
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 7.3e-15 84.0 53 71.7
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.2e-14 83.2 63 63.5
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.8e-14 82.0 53 69.8
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 3.6e-14 81.6 61 65.6
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 4.7e-14 81.3 53 67.9
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 8.1e-14 80.5 46 76.1
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 1.8e-13 79.3 53 66.0
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 6.8e-13 77.4 41 80.5
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.6e-12 75.5 61 57.4
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 9.9e-12 73.6 36 86.1
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 9.9e-12 73.6 53 62.3
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 1.7e-11 72.8 45 71.1
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 4.1e-10 68.2 42 66.7
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 1.6e-09 66.2 41 65.9
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 3.5e-09 65.1 55 58.2
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 4.6e-09 64.7 55 56.4
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 3.0e-08 62.0 39 69.2
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 8.6e-08 60.5 28 89.3
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 4.3e-07 58.2 37 67.6
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 2.8e-06 55.5 45 55.6
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 2.8e-06 55.5 45 55.6
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 3.6e-06 55.1 56 42.9


User provided reference genes

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