Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 3.9e-181 638.6 404 100.0
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 4.1e-167 592.0 418 92.6
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 2.7e-166 589.3 418 92.1
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 3.0e-165 585.9 418 91.9
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 4.9e-136 488.8 434 79.3
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 5.9e-113 412.1 454 70.9
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 1.6e-97 360.9 469 63.8
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 1.2e-92 344.7 419 63.5
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 8.5e-88 328.6 451 62.1
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 2.5e-87 327.0 384 67.4
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 5.5e-87 325.9 368 70.1
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 6.1e-86 322.4 420 62.1
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 1.0e-85 321.6 420 62.9
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 4.9e-83 312.8 396 65.2
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 6.3e-83 312.4 405 63.2
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 2.7e-81 307.0 444 59.5
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 2.3e-80 303.9 406 60.8
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 1.9e-79 300.8 380 62.9
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 1.6e-78 297.7 368 65.5
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 2.3e-77 293.9 423 59.3
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 2.0e-76 290.8 377 56.5
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 5.7e-76 289.3 418 58.6
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 5.7e-76 289.3 451 56.8
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 1.3e-75 288.1 418 58.6
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 7.0e-74 282.3 419 59.4
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 4.6e-73 279.6 403 58.8
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 5.0e-72 276.2 326 65.6
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 5.6e-71 272.7 425 55.8
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 5.6e-71 272.7 418 58.6
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 5.6e-71 272.7 357 61.3
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 1.6e-70 271.2 364 63.5
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 6.2e-70 269.2 363 64.2
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 1.0e-69 268.5 437 55.8
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 2.3e-69 267.3 419 43.9
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 4.0e-69 266.5 389 45.2
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 4.0e-69 266.5 389 45.2
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.2e-68 265.0 404 59.9
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 1.5e-68 264.6 419 43.9
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 9.8e-68 261.9 354 63.0
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 9.8e-68 261.9 389 59.6
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 8.3e-67 258.8 383 45.4
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 2.4e-66 257.3 391 59.3
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 3.2e-66 256.9 368 61.7
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 1.7e-64 251.1 370 61.9
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 1.7e-64 251.1 414 56.5
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 1.7e-64 251.1 350 62.0
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 3.9e-64 250.0 457 55.1
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 3.9e-64 250.0 368 60.3
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 5.0e-64 249.6 359 63.5
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 8.6e-64 248.8 332 63.6
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 8.6e-64 248.8 257 55.6
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 1.1e-63 248.4 414 57.2
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 1.9e-63 247.7 365 61.4
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 7.3e-63 245.7 349 59.3
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 1.2e-62 245.0 365 60.3
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 4.7e-62 243.0 250 56.0
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 1.1e-61 241.9 208 59.6
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 4.9e-59 233.0 368 58.4
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 4.9e-59 233.0 355 60.3
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.9e-58 231.1 376 60.4
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 5.4e-58 229.6 224 54.5
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 5.4e-58 229.6 172 66.3
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 3.0e-56 223.8 251 50.6
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 8.6e-56 222.2 221 52.9
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 1.1e-55 221.9 443 51.2
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 7.3e-55 219.2 213 52.1
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 1.6e-54 218.0 166 63.9
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 1.6e-54 218.0 212 51.4
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 2.1e-54 217.6 212 51.4
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 2.8e-54 217.2 171 63.2
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 8.1e-54 215.7 240 50.4
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 9.2e-50 202.2 188 54.3
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 7.8e-49 199.1 210 51.4
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 2.5e-47 194.1 358 55.3
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 1.2e-46 191.8 174 55.2
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 1.4e-45 188.3 193 51.3
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 3.4e-44 183.7 234 47.4
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 2.2e-43 181.0 153 59.5
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 3.5e-41 173.7 267 67.8
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 6.2e-38 162.9 144 54.2
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 4.9e-35 153.3 174 47.1
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 8.4e-35 152.5 238 66.4
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 7.1e-34 149.4 128 61.7
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 3.1e-29 134.0 398 39.7
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 1.7e-27 128.3 92 68.5
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 3.2e-26 124.0 118 46.6
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 3.2e-26 124.0 118 46.6
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 5.5e-26 123.2 202 77.2
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 2.3e-24 117.9 172 38.4
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.5e-23 115.2 94 63.8
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 1.5e-23 115.2 174 42.5
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 2.5e-23 114.4 123 48.0
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 1.3e-22 112.1 118 46.6
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 1.3e-22 112.1 118 46.6
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 2.8e-22 110.9 227 59.0
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 3.5e-17 94.0 77 62.3
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 3.7e-14 84.0 136 36.8
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 6.3e-14 83.2 67 55.2
ClCG05G006410 Citrullus lanatus HOM05D002444 ORTHO05D009235 1.3e-11 75.5 78 44.9
Eucgr.H04031 Eucalyptus grandis HOM05D002444 ORTHO05D009235 1.3e-08 65.5 54 53.7


User provided reference genes

Program Settings