Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0064 Fragaria x ananassa HOM05D005594 ORTHO05D006403 2.5e-165 585.5 323 100.0
FAN18G0194 Fragaria x ananassa HOM05D005594 ORTHO05D006403 9.3e-128 460.7 336 83.0
FvH4_5g34380 Fragaria vesca HOM05D005594 ORTHO05D006403 4.6e-127 458.4 336 82.7
FAN08G3514 Fragaria x ananassa HOM05D005594 ORTHO05D006403 1.8e-126 456.4 336 78.9
RcHm_v2.0_Chr7g0234971 Rosa chinensis HOM05D005594 ORTHO05D006403 1.2e-111 407.1 336 74.1
Prupe.1G535400 Prunus persica HOM05D005594 ORTHO05D006403 8.9e-86 321.2 340 55.9
MD08G1202000 Malus domestica HOM05D005594 ORTHO05D006403 1.1e-80 304.3 341 54.8
Oeu040880.1 Olea europaea HOM05D005594 ORTHO05D006403 1.2e-74 284.3 311 55.9
Actinidia19620 Actinidia chinensis HOM05D005594 ORTHO05D006403 4.6e-74 282.3 311 53.7
CSS0029582 Camellia sinensis var. sinensis HOM05D005594 ORTHO05D006403 2.5e-72 276.6 313 52.4
GSVIVG01009200001 Vitis vinifera HOM05D005594 ORTHO05D006403 2.5e-72 276.6 310 53.9
GSVIVG01026918001 Vitis vinifera HOM05D005594 ORTHO05D006403 5.6e-72 275.4 300 54.0
Ciclev10001834m.g Citrus clementina HOM05D005594 ORTHO05D006403 1.2e-71 274.2 314 50.6
CSS0014517 Camellia sinensis var. sinensis HOM05D005594 ORTHO05D006403 1.4e-70 270.8 297 53.2
Haze_22483 Corylus avellana HOM05D005594 ORTHO05D006403 1.4e-70 270.8 318 49.7
TAR381G1609 Trochodendron aralioides HOM05D005594 ORTHO05D006403 1.8e-70 270.4 311 51.8
vmacro21357 Vaccinium macrocarpon HOM05D005594 ORTHO05D006403 1.8e-70 270.4 313 51.8
Eucgr.F02158 Eucalyptus grandis HOM05D005594 ORTHO05D006403 8.9e-70 268.1 311 52.4
CANSAT35G1072 Cannabis sativa HOM05D005594 ORTHO05D006403 2.0e-69 266.9 300 52.7
CiPaw.07G163500 Carya illinoinensis HOM05D005594 ORTHO05D006403 2.0e-69 266.9 309 52.1
QL09p018366 Quercus lobata HOM05D005594 ORTHO05D006403 2.2e-68 263.5 298 50.7
QL12p040902 Quercus lobata HOM05D005594 ORTHO05D006403 2.9e-68 263.1 310 49.7
Nn1g05624 Nelumbo nucifera HOM05D005594 ORTHO05D006403 3.7e-68 262.7 316 50.3
PGR042G0833 Punica granatum HOM05D005594 ORTHO05D006403 8.3e-68 261.5 304 51.3
MBI16_g06011_MAGBIO Magnolia biondii HOM05D005594 ORTHO05D006403 1.9e-67 260.4 298 51.3
Lj8A496G24 Lonicera japonica HOM05D005594 ORTHO05D006403 7.0e-67 258.5 311 49.8
Sc15g0003090 Simmondsia chinensis HOM05D005594 ORTHO05D006403 9.2e-67 258.1 309 48.9
Rhsim05G0205900 Rhododendron simsii HOM05D005594 ORTHO05D006403 3.5e-66 256.1 315 51.4
MD08G1202600 Malus domestica HOM05D005594 ORTHO05D006403 6.0e-66 255.4 315 52.7
Thecc.08G073300 Theobroma cacao HOM05D005594 ORTHO05D006403 6.0e-66 255.4 312 51.0
TAR625G0360 Trochodendron aralioides HOM05D005594 ORTHO05D006403 7.8e-66 255.0 299 51.5
SalBow3G3026 Salvia bowleyana HOM05D005594 ORTHO05D006403 2.3e-65 253.4 306 49.7
TWI31G0793 Tripterygium wilfordii HOM05D005594 ORTHO05D006403 1.1e-64 251.1 312 49.0
Atru.chr13.987 Acer truncatum HOM05D005594 ORTHO05D006403 2.5e-64 250.0 314 48.4
Rhsim06G0070100 Rhododendron simsii HOM05D005594 ORTHO05D006403 2.5e-64 250.0 313 50.5
Cc10_g08520 Coffea canephora HOM05D005594 ORTHO05D006403 4.3e-64 249.2 307 48.2
THA.LOC104800630 Tarenaya hassleriana HOM05D005594 ORTHO05D006403 4.3e-64 249.2 305 49.2
MSTRG.24680 Avicennia marina HOM05D005594 ORTHO05D006403 5.6e-64 248.8 314 50.0
EL10Ac1g00491 Beta vulgaris HOM05D005594 ORTHO05D006403 7.3e-64 248.4 309 49.2
Manes.18G056600 Manihot esculenta HOM05D005594 ORTHO05D006403 7.3e-64 248.4 317 49.5
Nitab4.5_0000131g0040 Nicotiana tabacum HOM05D005594 ORTHO05D006403 7.3e-64 248.4 309 48.2
CiPaw.01G111900 Carya illinoinensis HOM05D005594 ORTHO05D006403 9.5e-64 248.1 307 50.2
Solyc04g076560.3 Solanum lycopersicum HOM05D005594 ORTHO05D006403 2.1e-63 246.9 291 50.5
SGA_v2.0_scaffold62G21352 Striga asiatica HOM05D000582 ORTHO05D006403 2.1e-63 246.9 303 49.2
CsaV3_3G048080 Cucumis sativus L. HOM05D005594 ORTHO05D006403 3.6e-63 246.1 311 48.9
Gohir.D05G221400 Gossypium hirsutum HOM05D005594 ORTHO05D006403 3.6e-63 246.1 314 48.1
COL.COLO4_35271 Corchorus olitorius HOM05D005594 ORTHO05D006403 4.7e-63 245.7 313 49.5
Duzib093G1195 Durio zibethinus HOM05D005594 ORTHO05D006403 1.1e-62 244.6 310 49.0
ClCG02G008140 Citrullus lanatus HOM05D005594 ORTHO05D006403 1.4e-62 244.2 314 48.4
Gohir.A05G218700 Gossypium hirsutum HOM05D005594 ORTHO05D006403 1.8e-62 243.8 314 48.1
Potri.005G152200 Populus trichocarpa HOM05D005594 ORTHO05D006403 1.8e-62 243.8 304 47.7
Sabra05G0119000 Salix brachista HOM05D005594 ORTHO05D006403 2.3e-62 243.4 304 48.0
Gorai.009G228600 Gossypium raimondii HOM05D005594 ORTHO05D006403 3.1e-62 243.0 314 47.8
Lj8A490G28 Lonicera japonica HOM05D005594 ORTHO05D006403 5.2e-62 242.3 319 47.0
Nitab4.5_0009755g0010 Nicotiana tabacum HOM05D005594 ORTHO05D006403 6.8e-62 241.9 310 47.1
PGSC0003DMG400008701 Solanum tuberosum HOM05D005594 ORTHO05D006403 1.5e-61 240.7 292 49.3
CDE02G1340 Ceratophyllum demersum HOM05D005594 ORTHO05D006403 2.0e-61 240.4 291 48.8
DCAR_028088 Daucus carota HOM05D005594 ORTHO05D006403 2.0e-61 240.4 291 49.1
Sed0005434 Sechium edule HOM05D005594 ORTHO05D006403 3.4e-61 239.6 303 48.5
Glyma.04G096700 Glycine max HOM05D005594 ORTHO05D006403 3.7e-60 236.1 311 47.9
SGA_v2.0_scaffold13G06499 Striga asiatica HOM05D005594 ORTHO05D006403 6.4e-60 235.3 295 48.5
Glyma.06G098500 Glycine max HOM05D005594 ORTHO05D006403 1.1e-59 234.6 311 46.6
arahy.Tifrunner.gnm1.ann1.7TC8PB Arachis hypogaea HOM05D005594 ORTHO05D006403 2.4e-59 233.4 303 45.9
Hund26823 Selenicereus undatus HOM05D005594 ORTHO05D006403 1.2e-58 231.1 305 47.2
MELO3C003509.2 Cucumis melo HOM05D005594 ORTHO05D006403 3.5e-58 229.6 317 45.7
unitig_26.g9553 Utricularia gibba HOM05D005594 ORTHO05D006403 7.8e-58 228.4 292 48.6
Dinv42597 Davidia involucrata HOM05D005594 ORTHO05D006403 1.0e-57 228.0 225 56.4
Sopen04g030280 Solanum pennellii HOM05D005594 ORTHO05D006403 1.0e-57 228.0 277 49.5
ECA248G0412 Erigeron canadensis HOM05D005594 ORTHO05D006403 1.3e-57 227.6 298 46.0
Ah.07g203840 Amaranthus hybridus HOM05D005594 ORTHO05D006403 1.7e-57 227.3 317 46.1
VMungo1309G0327 Vigna mungo HOM05D005594 ORTHO05D006403 2.3e-57 226.9 302 45.7
Aa31LG1G6880 Aethionema arabicum HOM05D005594 ORTHO05D006403 3.9e-57 226.1 314 45.9
arahy.Tifrunner.gnm1.ann1.X1J0TB Arachis hypogaea HOM05D005594 ORTHO05D006403 3.9e-57 226.1 289 46.4
Lj1g0021697 Lotus japonicus HOM05D005594 ORTHO05D006403 6.6e-57 225.3 294 48.3
Phvul.009G035100 Phaseolus vulgaris HOM05D005594 ORTHO05D006403 6.6e-57 225.3 289 46.7
Peaxi162Scf01112g00131 Petunia axillaris HOM05D005594 ORTHO05D006403 2.5e-56 223.4 280 47.5
Medtr3g099850 Medicago truncatula HOM05D005594 ORTHO05D006403 4.3e-56 222.6 309 44.3
ATR0767G044 Amborella trichopoda HOM05D005594 ORTHO05D006403 7.3e-56 221.9 305 45.9
CARHR007650 Cardamine hirsuta HOM05D005594 ORTHO05D006403 9.5e-56 221.5 299 47.2
Lsat_1_v5_gn_3_110060 Lactuca sativa HOM05D005594 ORTHO05D006403 1.6e-55 220.7 309 46.3
Cpa.g.sc1556.4 Carica papaya HOM05D005594 ORTHO05D006403 3.6e-55 219.5 231 55.8
Migut.N00274 Erythranthe guttata HOM05D005594 ORTHO05D006403 6.2e-55 218.8 319 44.8
Lalb_Chr23g0269971 Lupinus albus HOM05D005594 ORTHO05D006403 6.2e-55 218.8 291 46.7
PSO675G6381 Papaver somniferum HOM05D005594 ORTHO05D006403 6.2e-55 218.8 307 44.3
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 1.1e-54 218.0 300 46.7
AT1G07840 Arabidopsis thaliana HOM05D005594 ORTHO05D006403 1.4e-54 217.6 289 48.4
BraA06t23703Z Brassica rapa HOM05D005594 ORTHO05D006403 1.4e-54 217.6 300 46.7
Carub.0001s0718 Capsella rubella HOM05D005594 ORTHO05D006403 1.8e-54 217.2 313 47.3
PSO170G0052 Papaver somniferum HOM05D005594 ORTHO05D006403 3.1e-54 216.5 297 46.1
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 4.0e-54 216.1 300 46.0
CiPaw.01G112000 Carya illinoinensis HOM05D005594 ORTHO05D006403 4.0e-54 216.1 268 50.4
HanXRQChr09g0253981 Helianthus annuus HOM05D005594 ORTHO05D006403 4.0e-54 216.1 304 42.4
PSO541G2296 Papaver somniferum HOM05D005594 ORTHO05D006403 8.9e-54 214.9 307 43.6
Psat5g049560 Pisum sativum HOM05D005594 ORTHO05D006403 8.9e-54 214.9 312 43.9
AL1G18120 Arabidopsis lyrata HOM05D005594 ORTHO05D006403 1.5e-53 214.2 289 48.1
Sp1g06520 Schrenkiella parvula HOM05D005594 ORTHO05D006403 1.5e-53 214.2 303 45.9
Aqoxy5G01356 Aquilegia oxysepala HOM05D005594 ORTHO05D006403 4.4e-53 212.6 298 44.3
BolC5t29354H Brassica oleracea HOM05D000310 ORTHO05D000509 4.4e-53 212.6 300 45.7
Thhalv10008245m.g Eutrema salsugineum HOM05D005594 ORTHO05D006403 1.3e-52 211.1 298 46.0
AUR62014367 Chenopodium quinoa HOM05D005594 ORTHO05D006403 3.8e-52 209.5 291 48.8
AUR62019109 Chenopodium quinoa HOM05D005594 ORTHO05D006403 1.1e-51 208.0 284 48.6
CAN.G193.4 Capsicum annuum HOM05D005594 ORTHO05D006403 1.4e-51 207.6 220 53.2
HPP92_001778 Vanilla planifolia HOM05D005594 ORTHO05D006403 5.4e-51 205.7 299 41.5
Ca_26381_v3 Cicer arietinum L. HOM05D005594 ORTHO05D006403 2.1e-50 203.8 304 43.1
PGSC0003DMG400009352 Solanum tuberosum HOM05D005594 ORTHO05D006403 6.0e-50 202.2 257 48.2
TPR.G6332 Trifolium pratense HOM05D005594 ORTHO05D006403 6.0e-50 202.2 224 49.6
Ca_11286_v3 Cicer arietinum L. HOM05D005594 ORTHO05D006403 6.6e-49 198.7 307 42.3
SEGI_07360 Sequoiadendron giganteum HOM05D005594 ORTHO05D006403 1.1e-46 191.4 316 40.5
Os01g0911000 Oryza sativa ssp. japonica HOM05D005594 ORTHO05D006403 1.9e-43 180.6 282 41.5
Pp3c26_12080 Physcomitrium patens HOM05D005594 ORTHO05D006403 1.4e-38 164.5 285 36.1
Zm00001eb388820 Zea mays HOM05D005594 ORTHO05D006403 2.4e-38 163.7 294 38.8
AagrBONN_evm.TU.Sc2ySwM_117.2374 Anthoceros agrestis HOM05D005594 ORTHO05D006403 2.0e-37 160.6 296 35.5
Mapoly0041s0093 Marchantia polymorpha HOM05D005056 ORTHO05D006403 5.8e-37 159.1 307 33.2
SMO140G0091 Selaginella moellendorffii HOM05D005594 ORTHO05D006403 9.9e-37 158.3 198 45.5
Aqoxy4G03010 Aquilegia oxysepala HOM05D005594 ORTHO05D006403 1.6e-34 151.0 229 42.8
AagrBONN_evm.TU.Sc2ySwM_228.4407 Anthoceros agrestis HOM05D005056 ORTHO05D006403 1.5e-32 144.4 285 35.8
Lj4g0023762 Lotus japonicus HOM05D005594 ORTHO05D006403 2.1e-31 140.6 150 52.0
Zm00001eb365030 Zea mays HOM05D005594 ORTHO05D006403 3.7e-31 139.8 287 37.3
MD15G1388800 Malus domestica HOM05D005594 ORTHO05D006403 1.2e-29 134.8 232 41.8
Sed0022235 Sechium edule HOM05D005594 ORTHO05D006403 6.4e-28 129.0 192 41.7
Lj4A740T30 Lonicera japonica HOM05D005594 ORTHO05D006403 1.1e-27 128.3 177 44.6
ClCG11G014680 Citrullus lanatus HOM05D005594 ORTHO05D006403 9.3e-27 125.2 200 41.0
CBR_g34512 Chara braunii HOM05D005056 ORTHO05D006403 1.2e-26 124.8 295 30.8
MCO16G233 Micromonas commoda HOM05D005594 ORTHO05D006403 5.3e-22 109.4 311 29.9
HanXRQChr15g0472131 Helianthus annuus HOM05D005594 ORTHO05D006403 2.0e-21 107.5 123 46.3
HPP92_001777 Vanilla planifolia HOM05D005594 ORTHO05D006403 7.6e-21 105.5 282 30.9
Oeu034716.2 Olea europaea HOM05D005594 ORTHO05D006403 2.9e-20 103.6 88 60.2
Cre09.g394399 Chlamydomonas reinhardtii HOM05D005056 ORTHO05D006403 1.9e-19 100.9 326 28.2
CAN.G375.34 Capsicum annuum HOM05D005594 ORTHO05D006403 2.7e-18 97.1 159 42.8
HanXRQChr13g0407601 Helianthus annuus HOM05D005594 ORTHO05D006403 8.7e-17 92.0 128 40.6
BcaNung02661 Brassica carinata HOM05D005594 ORTHO05D006403 2.8e-15 87.0 96 52.1
HanXRQChr17g0561001 Helianthus annuus HOM05D005594 ORTHO05D006403 1.1e-14 85.1 95 44.2
Nitab4.5_0005345g0030 Nicotiana tabacum HOM05D005594 ORTHO05D006403 2.0e-13 80.9 65 60.0
PSO017G1526 Papaver somniferum HOM05D005594 ORTHO05D006403 2.1e-10 70.9 117 36.8
Pp3c13_22260 Physcomitrium patens HOM05D005056 ORTHO05D006487 1.9e-08 64.3 283 26.1
BcaNung02660 Brassica carinata HOM05D005594 ORTHO05D006403 5.7e-08 62.8 188 33.5
CAN.G308.62 Capsicum annuum HOM05D005056 ORTHO05D006487 7.4e-08 62.4 291 24.7
Oeu018048.1 Olea europaea HOM05D005056 ORTHO05D006487 3.7e-07 60.1 274 26.3
SMO367G0368 Selaginella moellendorffii HOM05D005056 ORTHO05D006487 6.3e-07 59.3 119 35.3
SMO358G0450 Selaginella moellendorffii HOM05D005056 ORTHO05D006487 8.2e-07 58.9 127 29.9
SEGI_33254 Sequoiadendron giganteum HOM05D005056 ORTHO05D006487 1.4e-06 58.2 284 24.6
CiPaw.02G100700 Carya illinoinensis HOM05D005056 ORTHO05D006487 2.4e-06 57.4 301 25.6
Zm00001eb306590 Zea mays HOM05D005594 ORTHO05D006403 2.4e-06 57.4 90 36.7
Aqoxy5G00514 Aquilegia oxysepala HOM05D005056 ORTHO05D006487 3.1e-06 57.0 140 28.6
Sopen11g029990 Solanum pennellii HOM05D005056 ORTHO05D006487 3.1e-06 57.0 291 25.1
Lsat_1_v5_gn_2_46281 Lactuca sativa HOM05D005056 ORTHO05D006487 5.3e-06 56.2 284 25.0
QL10p054991 Quercus lobata HOM05D005056 ORTHO05D006487 5.3e-06 56.2 279 24.0
FAN18G4484 Fragaria x ananassa HOM05D005056 ORTHO05D006487 6.9e-06 55.8 287 25.1
Lsat_1_v5_gn_8_154681 Lactuca sativa HOM05D002699 ORTHO05D002931 9.1e-06 55.5 56 51.8
Thecc.05G215400 Theobroma cacao HOM05D005056 ORTHO05D006487 9.1e-06 55.5 279 24.7
TWI38G0332 Tripterygium wilfordii HOM05D005056 ORTHO05D006487 9.1e-06 55.5 281 26.0


User provided reference genes

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