Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0033 Fragaria x ananassa HOM05D007096 ORTHO05D008288 8.8e-57 223.4 113 100.0
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 9.1e-38 160.2 86 95.3
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 1.6e-37 159.5 86 94.2
FvH4_5g14931 Fragaria vesca HOM05D007096 ORTHO05D008288 2.6e-32 142.1 84 89.3
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 7.5e-32 140.6 89 85.4
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 2.0e-29 132.5 89 77.5
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 1.2e-18 96.7 89 58.4
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 2.8e-18 95.5 89 58.4
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 4.7e-18 94.7 89 57.3
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 4.7e-18 94.7 89 55.1
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.4e-17 93.2 89 55.1
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 1.5e-16 89.7 90 53.3
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 5.8e-16 87.8 84 52.4
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 1.3e-15 86.7 90 53.3
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 1.7e-15 86.3 89 50.6
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.2e-15 85.9 76 60.5
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 2.2e-15 85.9 80 57.5
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 2.9e-15 85.5 87 54.0
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 3.7e-15 85.1 79 53.2
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 1.1e-14 83.6 90 52.2
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 1.4e-14 83.2 90 48.9
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 2.4e-14 82.4 90 48.9
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 5.4e-14 81.3 91 52.7
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 9.2e-14 80.5 89 51.7
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 1.2e-13 80.1 90 52.2
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 3.5e-13 78.6 90 52.2
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 4.6e-13 78.2 80 47.5
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 6.0e-13 77.8 90 48.9
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 7.8e-13 77.4 79 53.2
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 1.3e-12 76.6 90 50.0
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 6.6e-12 74.3 90 48.9
MELO3C001984.2 Cucumis melo HOM05D007096 ORTHO05D008288 6.6e-12 74.3 81 46.9
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 4.3e-11 71.6 77 46.8
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 5.6e-11 71.2 92 50.0
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.6e-10 69.7 84 46.4
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.8e-10 68.9 84 45.2
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 3.6e-10 68.6 85 48.2
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 4.7e-10 68.2 89 47.2
Sed0019012 Sechium edule HOM05D007096 ORTHO05D008288 6.2e-10 67.8 94 42.6
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.1e-09 67.0 84 45.2
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 1.4e-09 66.6 85 41.2
Glyma.05G026700 Glycine max HOM05D007096 ORTHO05D008288 4.0e-09 65.1 89 44.9
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 6.8e-09 64.3 85 43.5
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 2.6e-08 62.4 80 50.0
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 7.5e-08 60.8 85 40.0
Sed0011431 Sechium edule HOM05D007096 ORTHO05D008288 2.2e-07 59.3 93 44.1
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 2.2e-07 59.3 80 42.5
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.9e-07 58.9 81 43.2
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.9e-07 58.9 81 43.2
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 2.9e-07 58.9 85 40.0
Medtr3g037730 Medicago truncatula HOM05D007096 ORTHO05D008288 8.3e-07 57.4 89 41.6
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 1.9e-06 56.2 67 50.7
Sed0013252 Sechium edule HOM05D007096 ORTHO05D008288 5.4e-06 54.7 91 37.4
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 7.1e-06 54.3 85 37.6


User provided reference genes

Program Settings