Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0014 Fragaria x ananassa HOM05D006728 ORTHO05D007911 0.0e+00 1521.1 765 100.0
FAN08G1230 Fragaria x ananassa HOM05D006728 ORTHO05D007911 0.0e+00 1458.0 768 96.2
FAN13G2633 Fragaria x ananassa HOM05D006728 ORTHO05D007911 0.0e+00 1452.2 768 95.7
FvH4_5g32290 Fragaria vesca HOM05D006728 ORTHO05D007911 0.0e+00 1415.2 768 93.5
FAN18G3195 Fragaria x ananassa HOM05D006728 ORTHO05D007911 0.0e+00 1415.2 768 93.6
RcHm_v2.0_Chr7g0228481 Rosa chinensis HOM05D006728 ORTHO05D007911 0.0e+00 1197.2 765 80.3
MD15G1410500 Malus domestica HOM05D006728 ORTHO05D007911 1.5e-237 826.6 784 58.4
CiPaw.03G020000 Carya illinoinensis HOM05D006728 ORTHO05D007911 2.7e-181 639.8 769 49.2
Prupe.1G552000 Prunus persica HOM05D006728 ORTHO05D007911 2.3e-177 626.7 549 62.7
Dinv41739 Davidia involucrata HOM05D006728 ORTHO05D007911 3.7e-175 619.4 752 48.3
QL09p005234 Quercus lobata HOM05D006728 ORTHO05D007911 3.4e-160 569.7 762 44.9
Haze_13898 Corylus avellana HOM05D006728 ORTHO05D007911 2.2e-151 540.4 782 45.7
Hma1.2p1_0705F.1_g206940 Hydrangea macrophylla HOM05D006728 ORTHO05D007911 2.2e-151 540.4 786 44.7
Gohir.D05G252600 Gossypium hirsutum HOM05D006728 ORTHO05D007911 1.1e-150 538.1 782 42.8
Manes.01G125500 Manihot esculenta HOM05D006728 ORTHO05D007911 4.1e-150 536.2 757 43.3
Sabra04G0084300 Salix brachista HOM05D006728 ORTHO05D007911 1.3e-148 531.2 746 43.3
Gorai.009G264600 Gossypium raimondii HOM05D006728 ORTHO05D007911 2.3e-148 530.4 784 42.6
Sed0021340 Sechium edule HOM05D006728 ORTHO05D007911 3.3e-147 526.6 738 44.0
GSVIVG01012775001 Vitis vinifera HOM05D006728 ORTHO05D007911 1.2e-146 524.6 709 44.7
Potri.004G133900 Populus trichocarpa HOM05D006728 ORTHO05D007911 2.1e-146 523.9 742 43.7
COL.COLO4_24796 Corchorus olitorius HOM05D006728 ORTHO05D007911 4.7e-146 522.7 779 41.8
ClCG08G000330 Citrullus lanatus HOM05D006728 ORTHO05D007911 1.2e-144 518.1 733 43.1
Actinidia23017 Actinidia chinensis HOM05D006728 ORTHO05D007911 1.1e-142 511.5 755 44.0
Gohir.A05G251200 Gossypium hirsutum HOM05D006728 ORTHO05D007911 3.2e-142 510.0 731 43.0
TAR381G1619 Trochodendron aralioides HOM05D006728 ORTHO05D007911 2.1e-141 507.3 775 41.4
Atru.chr13.2383 Acer truncatum HOM05D006728 ORTHO05D007911 5.1e-140 502.7 748 42.6
CsaV3_5G040430 Cucumis sativus L. HOM05D006728 ORTHO05D007911 1.9e-139 500.7 732 42.8
CSS0015483 Camellia sinensis var. sinensis HOM05D006728 ORTHO05D007911 4.8e-138 496.1 733 44.1
MELO3C022215.2 Cucumis melo HOM05D006728 ORTHO05D007911 6.9e-137 492.3 748 42.2
Ciclev10004396m.g Citrus clementina HOM05D006728 ORTHO05D007911 4.5e-136 489.6 743 42.7
Rhsim10G0109300 Rhododendron simsii HOM05D006728 ORTHO05D007911 6.4e-135 485.7 672 45.4
vmacro12473 Vaccinium macrocarpon HOM05D006728 ORTHO05D007911 2.1e-133 480.7 801 40.8
TWI59G0071 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 3.8e-127 459.9 739 40.3
TWI23G0528 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 3.9e-124 449.9 744 39.8
PGR044G1487 Punica granatum HOM05D006728 ORTHO05D007911 1.1e-118 431.8 704 40.9
PGSC0003DMG400009266 Solanum tuberosum HOM05D006728 ORTHO05D007911 1.6e-117 427.9 758 38.1
CAN.G102.5 Capsicum annuum HOM05D006728 ORTHO05D007911 3.0e-116 423.7 758 37.9
Nn1g02058 Nelumbo nucifera HOM05D006728 ORTHO05D007911 3.3e-115 420.2 757 37.9
THA.LOC104799928 Tarenaya hassleriana HOM05D006728 ORTHO05D007911 1.6e-114 417.9 797 37.4
Cc10_g10290 Coffea canephora HOM05D006728 ORTHO05D007911 5.9e-112 409.5 755 37.1
Glyma.02G174700 Glycine max HOM05D006728 ORTHO05D007911 1.0e-111 408.7 701 39.4
Peaxi162Scf00391g00619 Petunia axillaris HOM05D006728 ORTHO05D007911 2.2e-111 407.5 747 38.4
Sopen11g011050 Solanum pennellii HOM05D006728 ORTHO05D007911 3.8e-111 406.8 757 36.7
Eucgr.J01411 Eucalyptus grandis HOM05D006728 ORTHO05D007911 5.0e-111 406.4 669 40.8
MSTRG.1553 Avicennia marina HOM05D006728 ORTHO05D007911 1.3e-106 391.7 764 36.6
Nitab4.5_0000365g0060 Nicotiana tabacum HOM05D006728 ORTHO05D007911 9.1e-105 385.6 767 36.9
Oeu051790.1 Olea europaea HOM05D006728 ORTHO05D007911 2.6e-104 384.0 741 38.9
Migut.C01293 Erythranthe guttata HOM05D006728 ORTHO05D007911 7.7e-104 382.5 761 37.7
Psat6g140120 Pisum sativum HOM05D006728 ORTHO05D007911 1.6e-101 374.8 695 38.0
SalBow7G3045 Salvia bowleyana HOM05D006728 ORTHO05D007911 3.0e-100 370.5 727 36.2
Ca_09788_v3 Cicer arietinum L. HOM05D006728 ORTHO05D007911 9.7e-99 365.5 693 36.2
VMungo0720G2132 Vigna mungo HOM05D006728 ORTHO05D007911 2.2e-98 364.4 696 36.9
Lalb_Chr21g0312581 Lupinus albus HOM05D006728 ORTHO05D007911 8.2e-98 362.5 692 36.8
Medtr1g072850 Medicago truncatula HOM05D006728 ORTHO05D007911 1.0e-95 355.5 698 36.4
Phvul.L001685 Phaseolus vulgaris HOM05D006728 ORTHO05D007911 5.0e-95 353.2 704 36.2
Migut.J01202 Erythranthe guttata HOM05D006728 ORTHO05D007911 3.2e-94 350.5 639 38.5
Thecc.03G072600 Theobroma cacao HOM05D006728 ORTHO05D007911 7.9e-93 345.9 479 45.5
Lj5g0018420 Lotus japonicus HOM05D006728 ORTHO05D007911 3.0e-92 344.0 562 40.4
Glyma.10G191500 Glycine max HOM05D006728 ORTHO05D007911 1.3e-90 338.6 591 38.4
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 4.8e-90 336.7 735 34.0
ECA232G4554 Erigeron canadensis HOM05D006728 ORTHO05D007911 1.6e-88 331.6 701 35.9
Lsat_1_v5_gn_4_133160 Lactuca sativa HOM05D006728 ORTHO05D007911 1.0e-87 328.9 787 33.9
Cpa.g.c30412.3 Carica papaya HOM05D006728 ORTHO05D007911 4.2e-86 323.6 486 42.6
AT4G27510 Arabidopsis thaliana HOM05D006728 ORTHO05D007911 2.7e-85 320.9 796 33.7
DCAR_011523 Daucus carota HOM05D006728 ORTHO05D007911 6.1e-85 319.7 778 31.9
Nitab4.5_0004437g0010 Nicotiana tabacum HOM05D006728 ORTHO05D007911 1.4e-84 318.5 646 36.1
Sp7g25450 Schrenkiella parvula HOM05D006728 ORTHO05D007911 1.4e-84 318.5 804 34.7
HanXRQChr17g0559021 Helianthus annuus HOM05D006728 ORTHO05D007911 3.0e-84 317.4 780 33.2
unitig_749.g13882 Utricularia gibba HOM05D006728 ORTHO05D007911 4.4e-83 313.5 761 32.6
CARHR235190 Cardamine hirsuta HOM05D006728 ORTHO05D007911 9.7e-83 312.4 767 33.2
TPR.G18562 Trifolium pratense HOM05D006728 ORTHO05D007911 2.2e-82 311.2 708 33.8
Aa31LG5G9990 Aethionema arabicum HOM05D006728 ORTHO05D007911 1.6e-80 305.1 805 32.4
BolC1t02321H Brassica oleracea HOM05D006728 ORTHO05D007911 2.0e-80 304.7 788 33.8
C01p23690 Brassica napus HOM05D006728 ORTHO05D007911 2.7e-80 304.3 788 33.6
PSO144G0035 Papaver somniferum HOM05D006728 ORTHO05D007911 1.3e-79 302.0 743 32.8
arahy.Tifrunner.gnm1.ann1.2Y318K Arachis hypogaea HOM05D006728 ORTHO05D007911 2.2e-79 301.2 694 34.7
Thhalv10024534m.g Eutrema salsugineum HOM05D006728 ORTHO05D007911 5.5e-78 296.6 770 33.1
Carub.0007s1334 Capsella rubella HOM05D006728 ORTHO05D007911 6.1e-77 293.1 784 32.9
BraA01t01819Z Brassica rapa HOM05D006728 ORTHO05D007911 1.0e-76 292.4 784 33.2
A01p18730 Brassica napus HOM05D006728 ORTHO05D007911 4.0e-76 290.4 784 32.8
PSO325G0011 Papaver somniferum HOM05D006728 ORTHO05D007911 4.0e-76 290.4 708 33.6
Aqoxy7G02767 Aquilegia oxysepala HOM05D006728 ORTHO05D007911 1.5e-75 288.5 744 33.5
Solyc11g020910.3 Solanum lycopersicum HOM05D006728 ORTHO05D007911 4.5e-72 276.9 512 36.1
arahy.Tifrunner.gnm1.ann1.PFS1J6 Arachis hypogaea HOM05D006728 ORTHO05D007911 3.6e-69 267.3 526 37.1
arahy.Tifrunner.gnm1.ann1.HTR7VF Arachis hypogaea HOM05D006728 ORTHO05D007911 5.2e-68 263.5 527 37.0
arahy.Tifrunner.gnm1.ann1.SM6YYV Arachis hypogaea HOM05D006728 ORTHO05D007911 2.0e-67 261.5 527 37.0
ATR0487G015 Amborella trichopoda HOM05D006728 ORTHO05D007911 9.8e-67 259.2 701 30.1
BcaNung07241 Brassica carinata HOM05D006728 ORTHO05D007911 2.2e-66 258.1 778 31.1
Sc24g0002590 Simmondsia chinensis HOM05D006728 ORTHO05D007911 1.8e-65 255.0 750 31.9
Hund02381 Selenicereus undatus HOM05D006728 ORTHO05D007911 2.9e-63 247.7 739 31.0
SHI29298 Sapria himalayana HOM05D006728 ORTHO05D007911 2.8e-61 241.1 564 33.5
PSO325G0006 Papaver somniferum HOM05D006728 ORTHO05D007911 1.2e-59 235.7 637 33.4
PSO170G3307 Papaver somniferum HOM05D006728 ORTHO05D007911 1.1e-57 229.2 740 29.9
Atru.chr1.2802 Acer truncatum HOM05D006728 ORTHO05D007911 1.8e-57 228.4 368 41.0
Nn3g16574 Nelumbo nucifera HOM05D006728 ORTHO05D007911 4.0e-52 210.7 744 27.7
AUR62037055 Chenopodium quinoa HOM05D006728 ORTHO05D007911 5.2e-52 210.3 744 30.4
EL10Ac7g16629 Beta vulgaris HOM05D006728 ORTHO05D007911 2.2e-50 204.9 730 28.6
AUR62036525 Chenopodium quinoa HOM05D006728 ORTHO05D007911 6.4e-42 176.8 646 30.0
RcHm_v2.0_Chr5g0040361 Rosa chinensis HOM05D006728 ORTHO05D007911 1.1e-38 166.0 101 79.2
PSO170G3890 Papaver somniferum HOM05D006728 ORTHO05D007911 2.5e-38 164.9 349 34.4
Cpa.g.c34985.1 Carica papaya HOM05D006728 ORTHO05D007911 1.6e-29 135.6 250 36.8
SEGI_13662 Sequoiadendron giganteum HOM05D013057 ORTHO05D007911 3.6e-29 134.4 739 24.5
Prupe.8G015600 Prunus persica HOM05D025481 ORTHO05D007911 8.1e-29 133.3 308 37.3
HPP92_000129 Vanilla planifolia HOM05D006728 ORTHO05D007911 4.0e-28 131.0 638 24.3
arahy.Tifrunner.gnm1.ann1.G54CSB Arachis hypogaea HOM05D006728 ORTHO05D007911 1.1e-25 122.9 280 36.8
Atru.chr1.2803 Acer truncatum HOM05D006728 ORTHO05D007911 7.1e-25 120.2 140 50.0
Cfa008144 Carpinus fangiana HOM05D006728 ORTHO05D007911 1.8e-20 105.5 101 49.5
TPR.G18439 Trifolium pratense HOM05D006728 ORTHO05D007911 5.3e-20 104.0 128 48.4
Glyma.20G198666 Glycine max HOM05D006728 ORTHO05D007911 8.4e-18 96.7 170 39.4
Os02g0461200 Oryza sativa ssp. japonica HOM05D006728 ORTHO05D007911 8.4e-18 96.7 546 26.0
Zm00001eb295040 Zea mays HOM05D006728 ORTHO05D007911 3.3e-14 84.7 569 24.3
Glyma.20G198732 Glycine max HOM05D006728 ORTHO05D007911 3.7e-13 81.3 151 35.8
CDE05G2798 Ceratophyllum demersum HOM05D006728 ORTHO05D007911 1.3e-10 72.8 242 31.4
SHI29297 Sapria himalayana HOM05D006728 ORTHO05D007911 1.7e-10 72.4 72 44.4
SEGI_13134 Sequoiadendron giganteum HOM05D013057 ORTHO05D007911 3.0e-07 61.6 267 26.2
Aqoxy1G01188 Aquilegia oxysepala HOM05D006728 ORTHO05D007911 4.3e-06 57.8 64 48.4


User provided reference genes

Program Settings