Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0013 Fragaria x ananassa HOM05D006134 ORTHO05D007671 4.6e-67 257.7 124 100.0
FAN08G0898 Fragaria x ananassa HOM05D006134 ORTHO05D007671 4.6e-67 257.7 124 100.0
FvH4_5g23580 Fragaria vesca HOM05D006134 ORTHO05D007671 1.8e-66 255.8 124 99.2
FAN18G0426 Fragaria x ananassa HOM05D006134 ORTHO05D007671 1.8e-66 255.8 124 99.2
FAN18G3769 Fragaria x ananassa HOM05D006134 ORTHO05D007671 1.8e-66 255.8 124 99.2
RcHm_v2.0_Chr7g0212881 Rosa chinensis HOM05D006134 ORTHO05D007671 3.9e-66 254.6 124 98.4
FAN13G0082 Fragaria x ananassa HOM05D006134 ORTHO05D007671 7.4e-65 250.4 124 96.8
Ciclev10029589m.g Citrus clementina HOM05D006134 ORTHO05D007671 3.5e-59 231.5 125 88.8
Psat5g110600 Pisum sativum HOM05D006134 ORTHO05D007671 1.3e-58 229.6 125 88.0
Atru.chr9.1880 Acer truncatum HOM05D006134 ORTHO05D007671 1.8e-58 229.2 125 87.2
Lj6g0003235 Lotus japonicus HOM05D006134 ORTHO05D007671 2.3e-58 228.8 125 88.0
Glyma.11G156931 Glycine max HOM05D006134 ORTHO05D007671 3.0e-58 228.4 125 88.0
CSS0024749 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 3.9e-58 228.0 125 88.0
CSS0037732 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 3.9e-58 228.0 125 88.0
SGA_v2.0_scaffold207G41895 Striga asiatica HOM05D006134 ORTHO05D007671 5.1e-58 227.6 124 85.5
VMungo1080G1627 Vigna mungo HOM05D006134 ORTHO05D007671 1.1e-57 226.5 125 87.2
arahy.Tifrunner.gnm1.ann1.A6PCA1 Arachis hypogaea HOM05D006134 ORTHO05D007671 1.5e-57 226.1 125 87.2
CANSAT80G1040 Cannabis sativa HOM05D006134 ORTHO05D007671 1.5e-57 226.1 125 88.8
Lalb_Chr10g0093471 Lupinus albus HOM05D006134 ORTHO05D007671 1.5e-57 226.1 125 86.4
Lalb_Chr10g0093491 Lupinus albus HOM05D006134 ORTHO05D007671 1.5e-57 226.1 125 86.4
Medtr3g082190 Medicago truncatula HOM05D006134 ORTHO05D007671 1.5e-57 226.1 125 86.4
Cpa.g.sc182.12 Carica papaya HOM05D006134 ORTHO05D007671 1.9e-57 225.7 125 87.2
CiPaw.10G137600 Carya illinoinensis HOM05D006134 ORTHO05D007671 1.9e-57 225.7 125 85.6
Ca_17958_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 1.9e-57 225.7 125 85.6
Haze_00699 Corylus avellana HOM05D006134 ORTHO05D007671 1.9e-57 225.7 125 86.4
CSS0027024 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 3.3e-57 224.9 125 86.4
CsaV3_2G009990 Cucumis sativus L. HOM05D006134 ORTHO05D007671 1.6e-56 222.6 125 86.4
Manes.11G097800 Manihot esculenta HOM05D006134 ORTHO05D007671 1.6e-56 222.6 125 85.6
Phvul.005G034200 Phaseolus vulgaris HOM05D006134 ORTHO05D007671 1.6e-56 222.6 125 84.8
arahy.Tifrunner.gnm1.ann1.PD8D7M Arachis hypogaea HOM05D006134 ORTHO05D007671 2.1e-56 222.2 125 86.4
MELO3C008634.2 Cucumis melo HOM05D006134 ORTHO05D007671 2.1e-56 222.2 125 86.4
AUR62021421 Chenopodium quinoa HOM05D006134 ORTHO05D007671 2.8e-56 221.9 125 84.8
Cc02_g30030 Coffea canephora HOM05D006134 ORTHO05D007671 2.8e-56 221.9 125 85.6
QL11p052022 Quercus lobata HOM05D006134 ORTHO05D007671 4.8e-56 221.1 124 84.7
QL11p052248 Quercus lobata HOM05D006134 ORTHO05D007671 4.8e-56 221.1 124 84.7
EL10Ac9g21342 Beta vulgaris HOM05D006134 ORTHO05D007671 8.2e-56 220.3 125 84.8
SGA_v2.0_scaffold80G25864 Striga asiatica HOM05D006134 ORTHO05D007671 8.2e-56 220.3 124 83.1
COL.COLO4_32379 Corchorus olitorius HOM05D006134 ORTHO05D007671 2.4e-55 218.8 124 82.3
Peaxi162Scf00359g00813 Petunia axillaris HOM05D006134 ORTHO05D007671 3.1e-55 218.4 125 82.4
Oeu055649.1 Olea europaea HOM05D006134 ORTHO05D007671 4.1e-55 218.0 124 83.1
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 5.3e-55 217.6 125 85.6
Hund14365 Selenicereus undatus HOM05D006134 ORTHO05D007671 5.3e-55 217.6 125 83.2
SalBow3G4511 Salvia bowleyana HOM05D006134 ORTHO05D007671 6.9e-55 217.2 124 80.6
Sed0025018 Sechium edule HOM05D006134 ORTHO05D007671 6.9e-55 217.2 125 83.2
Dinv21074 Davidia involucrata HOM05D006134 ORTHO05D007671 9.0e-55 216.9 125 84.0
Migut.N01297 Erythranthe guttata HOM05D006134 ORTHO05D007671 9.0e-55 216.9 124 79.8
Potri.016G127200 Populus trichocarpa HOM05D006134 ORTHO05D007671 1.2e-54 216.5 124 82.3
Duzib052G0391 Durio zibethinus HOM05D006134 ORTHO05D007671 2.0e-54 215.7 124 82.3
unitig_52.g17376 Utricularia gibba HOM05D006134 ORTHO05D007671 2.6e-54 215.3 124 79.0
GSVIVG01023976001 Vitis vinifera HOM05D006134 ORTHO05D007671 5.8e-54 214.2 125 83.2
Ah.01g023220 Amaranthus hybridus HOM05D006134 ORTHO05D007671 1.0e-53 213.4 125 81.6
Lsat_1_v5_gn_1_25060 Lactuca sativa HOM05D006134 ORTHO05D007671 1.0e-53 213.4 124 83.1
AUR62010905 Chenopodium quinoa HOM05D006134 ORTHO05D007671 1.3e-53 213.0 137 77.4
Aqoxy5G01105 Aquilegia oxysepala HOM05D006134 ORTHO05D007671 1.7e-53 212.6 124 79.0
Gohir.D01G010100 Gossypium hirsutum HOM05D006134 ORTHO05D007671 2.2e-53 212.2 124 81.5
Gorai.002G012200 Gossypium raimondii HOM05D006134 ORTHO05D007671 2.2e-53 212.2 124 81.5
HanXRQChr12g0383651 Helianthus annuus HOM05D006134 ORTHO05D007671 2.2e-53 212.2 125 80.8
Nitab4.5_0000101g0190 Nicotiana tabacum HOM05D006134 ORTHO05D007671 2.2e-53 212.2 125 78.4
MSTRG.5438 Avicennia marina HOM05D006134 ORTHO05D007671 2.9e-53 211.8 124 79.8
Thecc.02G130200 Theobroma cacao HOM05D006134 ORTHO05D007671 2.9e-53 211.8 124 79.8
Nn6g31911 Nelumbo nucifera HOM05D006134 ORTHO05D007671 5.0e-53 211.1 125 80.8
TAR376G1190 Trochodendron aralioides HOM05D006134 ORTHO05D007671 6.5e-53 210.7 125 80.0
PGR042G1126 Punica granatum HOM05D006134 ORTHO05D007671 1.4e-52 209.5 125 81.6
Gohir.A01G010500 Gossypium hirsutum HOM05D006134 ORTHO05D007671 2.5e-52 208.8 124 80.6
Oeu002964.1 Olea europaea HOM05D006134 ORTHO05D007671 1.2e-51 206.5 124 77.4
PGSC0003DMG400020551 Solanum tuberosum HOM05D006134 ORTHO05D007671 1.2e-51 206.5 125 77.6
CAN.G181.11 Capsicum annuum HOM05D006134 ORTHO05D007671 1.6e-51 206.1 125 78.4
ECA247G3382 Erigeron canadensis HOM05D006134 ORTHO05D007671 1.6e-51 206.1 125 79.2
Solyc06g007480.3 Solanum lycopersicum HOM05D006134 ORTHO05D007671 1.6e-51 206.1 125 77.6
THA.LOC104807806 Tarenaya hassleriana HOM05D006134 ORTHO05D007671 1.6e-51 206.1 124 77.4
TWI79G0531 Tripterygium wilfordii HOM05D006134 ORTHO05D007671 1.6e-51 206.1 125 79.2
Sp7g37280 Schrenkiella parvula HOM05D006134 ORTHO05D007671 2.1e-51 205.7 124 75.8
Duzib248G0743 Durio zibethinus HOM05D006134 ORTHO05D007671 2.7e-51 205.3 149 68.5
Aa31LG6G16690 Aethionema arabicum HOM05D006134 ORTHO05D007671 4.6e-51 204.5 124 75.8
Sc08g0002730 Simmondsia chinensis HOM05D006134 ORTHO05D007671 4.6e-51 204.5 124 80.6
Sopen06g002390 Solanum pennellii HOM05D006134 ORTHO05D007671 6.1e-51 204.1 125 76.8
Nitab4.5_0000890g0130 Nicotiana tabacum HOM05D006134 ORTHO05D007671 7.9e-51 203.8 132 75.0
Rhsim11G0193500 Rhododendron simsii HOM05D006134 ORTHO05D007671 1.3e-50 203.0 171 62.0
Eucgr.F02572 Eucalyptus grandis HOM05D006134 ORTHO05D007671 6.7e-50 200.7 125 78.4
Thhalv10026572m.g Eutrema salsugineum HOM05D006134 ORTHO05D007671 8.7e-50 200.3 124 73.4
TAR628G0583 Trochodendron aralioides HOM05D006134 ORTHO05D007671 1.1e-49 199.9 125 76.0
HanXRQChr10g0314981 Helianthus annuus HOM05D006134 ORTHO05D007671 1.5e-49 199.5 125 77.6
MD12G1003500 Malus domestica HOM05D006134 ORTHO05D007671 2.5e-49 198.7 103 93.2
CDE04G1640 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 4.3e-49 198.0 125 74.4
Dinv31631 Davidia involucrata HOM05D006134 ORTHO05D007671 2.8e-48 195.3 125 78.4
ClCG11G010360 Citrullus lanatus HOM05D006134 ORTHO05D007671 1.1e-47 193.4 108 85.2
ATR0730G227 Amborella trichopoda HOM05D006134 ORTHO05D007671 1.5e-46 189.5 125 70.4
vmacro02291 Vaccinium macrocarpon HOM05D006134 ORTHO05D007671 2.0e-46 189.1 204 53.4
PSO170G0646 Papaver somniferum HOM05D006134 ORTHO05D007671 3.4e-46 188.3 125 73.6
AUR62013003 Chenopodium quinoa HOM05D006134 ORTHO05D007671 4.5e-46 188.0 103 86.4
CDE02G2427 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 1.0e-45 186.8 125 69.6
PSO210G5022 Papaver somniferum HOM05D006134 ORTHO05D007671 1.0e-45 186.8 125 72.8
AUR62010013 Chenopodium quinoa HOM05D006134 ORTHO05D007671 1.1e-44 183.3 103 84.5
Prupe.7G004000 Prunus persica HOM05D006134 ORTHO05D007671 1.9e-44 182.6 125 75.2
Carub.0007s0038 Capsella rubella HOM05D006134 ORTHO05D007671 5.5e-44 181.0 124 68.5
AUR62015152 Chenopodium quinoa HOM05D006134 ORTHO05D007671 7.2e-44 180.6 103 82.5
Mapoly0028s0104 Marchantia polymorpha HOM05D006134 ORTHO05D007671 1.6e-43 179.5 122 68.9
AT4G38495 Arabidopsis thaliana HOM05D006134 ORTHO05D007671 3.9e-42 174.9 125 65.6
Sed0020335 Sechium edule HOM05D006134 ORTHO05D007671 3.9e-42 174.9 125 70.4
Os04g0274400 Oryza sativa ssp. japonica HOM05D006134 ORTHO05D007671 8.8e-42 173.7 125 66.4
SMO367G0732 Selaginella moellendorffii HOM05D006134 ORTHO05D007671 8.8e-42 173.7 124 68.5
HanXRQChr07g0198481 Helianthus annuus HOM05D006134 ORTHO05D007671 1.1e-41 173.3 125 68.8
Pp3c14_10610 Physcomitrium patens HOM05D006134 ORTHO05D007671 3.3e-41 171.8 117 69.2
Pp3c14_10611 Physcomitrium patens HOM05D006134 ORTHO05D007671 3.3e-41 171.8 117 69.2
AL7G10360 Arabidopsis lyrata HOM05D006134 ORTHO05D007671 2.2e-40 169.1 120 66.7
BcaNung01304 Brassica carinata HOM05D006134 ORTHO05D007671 2.2e-40 169.1 124 64.5
C01p00090 Brassica napus HOM05D006134 ORTHO05D007671 2.2e-40 169.1 124 64.5
A01p00050 Brassica napus HOM05D006134 ORTHO05D007671 1.8e-39 166.0 124 63.7
BcaNung04221 Brassica carinata HOM05D006134 ORTHO05D007671 2.9e-37 158.7 126 61.9
CBR_g12196 Chara braunii HOM05D006134 ORTHO05D007671 3.6e-35 151.8 119 62.2
Zm00001eb420290 Zea mays HOM05D006134 ORTHO05D007671 3.0e-34 148.7 113 60.2
Sabra16G0121200 Salix brachista HOM05D006134 ORTHO05D007671 4.1e-31 138.3 80 80.0
Sabra16G0122100 Salix brachista HOM05D006134 ORTHO05D007671 4.1e-31 138.3 80 80.0
Prupe.4G038000 Prunus persica HOM05D006134 ORTHO05D007671 2.3e-26 122.5 105 61.9
BolC1t00014H Brassica oleracea HOM05D006134 ORTHO05D007671 5.3e-23 111.3 80 63.8
BraA01t00010Z Brassica rapa HOM05D006134 ORTHO05D007671 4.5e-22 108.2 80 62.5
A07p02890 Brassica napus HOM05D006134 ORTHO05D007671 1.9e-20 102.8 77 62.3
BraA07t28089Z Brassica rapa HOM05D006134 ORTHO05D007671 1.9e-20 102.8 77 62.3
Nitab4.5_0000165g0190 Nicotiana tabacum HOM05D006134 ORTHO05D007671 1.2e-19 100.1 69 69.6
SEGI_00696 Sequoiadendron giganteum HOM05D006134 ORTHO05D007671 6.1e-19 97.8 66 66.7
Ca_02756_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 1.8e-18 96.3 58 79.3
Ca_02758_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 1.8e-18 96.3 58 79.3
Ca_02994_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 7.5e-17 90.9 53 83.0
CARHR294230 Cardamine hirsuta HOM05D006134 ORTHO05D007671 7.0e-15 84.3 78 52.6
SHI24498 Sapria himalayana HOM05D006134 ORTHO05D007671 7.7e-14 80.9 58 69.0
Sabra16G0121700 Salix brachista HOM05D006134 ORTHO05D007671 2.2e-13 79.3 45 80.0
TPR.G34385 Trifolium pratense HOM05D006134 ORTHO05D007671 1.1e-12 77.0 44 79.5
EL10Ac8g18393 Beta vulgaris HOM05D006134 ORTHO05D007671 1.2e-11 73.6 44 81.8
SMO230G0118 Selaginella moellendorffii HOM05D006134 ORTHO05D007671 2.0e-06 56.2 40 62.5


User provided reference genes

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