Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G3479 Fragaria x ananassa HOM05D002676 ORTHO05D035440 6.8e-48 193.7 103 100.0
FvH4_7g33130 Fragaria vesca HOM05D002676 ORTHO05D003194 6.4e-46 187.2 103 96.1
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 1.9e-45 185.7 103 96.1
FAN01G2562 Fragaria x ananassa HOM05D002676 ORTHO05D003194 7.0e-45 183.7 103 95.1
FAN10G2430 Fragaria x ananassa HOM05D002676 ORTHO05D003194 2.0e-44 182.2 103 94.2
FAN10G2824 Fragaria x ananassa HOM05D002676 ORTHO05D003194 2.0e-44 182.2 103 94.2
FvH4_7g33180 Fragaria vesca HOM05D002676 ORTHO05D035440 2.3e-43 178.7 103 93.2
FvH4_5g02260 Fragaria vesca HOM05D002676 ORTHO05D035440 1.2e-33 146.4 84 90.5
RcHm_v2.0_Chr1g0383201 Rosa chinensis HOM05D002676 ORTHO05D003194 1.3e-30 136.3 109 72.5
Prupe.2G321200 Prunus persica HOM05D002676 ORTHO05D003194 6.4e-14 80.9 103 49.5
MD01G1230500 Malus domestica HOM05D002676 ORTHO05D003194 1.4e-13 79.7 95 50.5
MD07G1302100 Malus domestica HOM05D002676 ORTHO05D003194 1.4e-13 79.7 95 49.5
Potri.015G001900 Populus trichocarpa HOM05D002676 ORTHO05D003194 1.5e-10 69.7 111 36.9
TAR375G0760 Trochodendron aralioides HOM05D002676 ORTHO05D003194 5.6e-10 67.8 102 39.2
Sabra15G0001200 Salix brachista HOM05D002676 ORTHO05D003194 7.3e-10 67.4 111 37.8
Gohir.A12G245300 Gossypium hirsutum HOM05D002676 ORTHO05D003194 1.6e-09 66.2 102 42.2
Gohir.D12G246000 Gossypium hirsutum HOM05D002676 ORTHO05D003194 1.6e-09 66.2 102 42.2
Gorai.008G263700 Gossypium raimondii HOM05D002676 ORTHO05D003194 1.6e-09 66.2 102 42.2
MELO3C024849.2 Cucumis melo HOM05D002676 ORTHO05D003194 2.1e-09 65.9 102 36.3
Glyma.04G226400 Glycine max HOM05D002676 ORTHO05D003194 4.8e-09 64.7 106 35.8
Eucgr.K00456 Eucalyptus grandis HOM05D002676 ORTHO05D003194 6.2e-09 64.3 105 39.0
Cfa016139 Carpinus fangiana HOM05D002676 ORTHO05D003194 8.1e-09 63.9 108 39.8
Lj1g0014590 Lotus japonicus HOM05D002676 ORTHO05D003194 8.1e-09 63.9 106 35.8
FvH4_2g05760 Fragaria vesca HOM05D002676 ORTHO05D003194 1.4e-08 63.2 52 59.6
FAN20G2822 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.4e-08 63.2 52 59.6
FAN24G3241 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.4e-08 63.2 52 59.6
CARHR235280 Cardamine hirsuta HOM05D002676 ORTHO05D003194 1.8e-08 62.8 102 37.3
CiPaw.06G039000 Carya illinoinensis HOM05D002676 ORTHO05D003194 1.8e-08 62.8 108 40.7
PSO782G3149 Papaver somniferum HOM05D002676 ORTHO05D003194 1.8e-08 62.8 109 39.4
Carub.0007s1328 Capsella rubella HOM05D002676 ORTHO05D003194 2.4e-08 62.4 105 35.2
PSO063G5217 Papaver somniferum HOM05D002676 ORTHO05D003194 2.4e-08 62.4 110 39.1
ECA238G0251 Erigeron canadensis HOM05D002676 ORTHO05D006846 3.1e-08 62.0 93 41.9
Potri.012G005500 Populus trichocarpa HOM05D002676 ORTHO05D003194 3.1e-08 62.0 107 39.3
Atru.chr12.2511 Acer truncatum HOM05D002676 ORTHO05D003194 4.0e-08 61.6 103 39.8
Atru.chr12.2533 Acer truncatum HOM05D002676 ORTHO05D003194 4.0e-08 61.6 103 39.8
CANSAT21G0360 Cannabis sativa HOM05D002676 ORTHO05D003194 5.3e-08 61.2 107 37.4
Carub.0008s1439 Capsella rubella HOM05D002676 ORTHO05D003194 5.3e-08 61.2 67 52.2
Hma1.2p1_0415F.1_g148330 Hydrangea macrophylla HOM05D002676 ORTHO05D003194 5.3e-08 61.2 110 37.3
TWI23G0751 Tripterygium wilfordii HOM05D002676 ORTHO05D003194 5.3e-08 61.2 111 37.8
CsaV3_4G009820 Cucumis sativus L. HOM05D002676 ORTHO05D003194 6.9e-08 60.8 102 35.3
Thhalv10025217m.g Eutrema salsugineum HOM05D002676 ORTHO05D003194 6.9e-08 60.8 105 39.0
Sopen03g021770 Solanum pennellii HOM05D002676 ORTHO05D003194 6.9e-08 60.8 104 37.5
THA.LOC104811884 Tarenaya hassleriana HOM05D002676 ORTHO05D003194 6.9e-08 60.8 55 54.5
AagrBONN_evm.TU.Sc2ySwM_344.3847 Anthoceros agrestis HOM05D002676 ORTHO05D003194 9.0e-08 60.5 118 34.7
CSS0014747 Camellia sinensis var. sinensis HOM05D002676 ORTHO05D003194 9.0e-08 60.5 111 35.1
CSS0034101 Camellia sinensis var. sinensis HOM05D002676 ORTHO05D003194 9.0e-08 60.5 102 38.2
Peaxi162Scf00815g00117 Petunia axillaris HOM05D002676 ORTHO05D003194 9.0e-08 60.5 81 43.2
PGR142G3496 Punica granatum HOM05D002676 ORTHO05D003194 9.0e-08 60.5 102 41.2
RcHm_v2.0_Chr6g0256651 Rosa chinensis HOM05D002676 ORTHO05D003194 9.0e-08 60.5 50 60.0
PGSC0003DMG400000577 Solanum tuberosum HOM05D002676 ORTHO05D003194 9.0e-08 60.5 108 38.0
Aa31LG3G9930 Aethionema arabicum HOM05D002676 ORTHO05D003194 1.2e-07 60.1 102 35.3
DCAR_008993 Daucus carota HOM05D002676 ORTHO05D003194 1.2e-07 60.1 105 39.0
Gohir.A08G106100 Gossypium hirsutum HOM05D002676 ORTHO05D003194 1.2e-07 60.1 105 34.3
Gohir.D08G117500 Gossypium hirsutum HOM05D002676 ORTHO05D003194 1.2e-07 60.1 105 34.3
Nitab4.5_0000115g0130 Nicotiana tabacum HOM05D002676 ORTHO05D003194 1.2e-07 60.1 50 54.0
QL09p006151 Quercus lobata HOM05D002676 ORTHO05D003194 1.2e-07 60.1 103 35.9
TAR629G0525 Trochodendron aralioides HOM05D002676 ORTHO05D003194 1.2e-07 60.1 102 36.3
CARHR267300 Cardamine hirsuta HOM05D002676 ORTHO05D003194 1.5e-07 59.7 58 50.0
Ciclev10020366m.g Citrus clementina HOM05D002676 ORTHO05D003194 1.5e-07 59.7 103 37.9
Gorai.004G126000 Gossypium raimondii HOM05D002676 ORTHO05D003194 1.5e-07 59.7 105 34.3
Nitab4.5_0000021g0130 Nicotiana tabacum HOM05D002676 ORTHO05D003194 1.5e-07 59.7 105 35.2
Rhsim03G0217600 Rhododendron simsii HOM05D002676 ORTHO05D003194 1.5e-07 59.7 110 37.3
BcaC03g14351 Brassica carinata HOM05D002676 ORTHO05D003194 2.0e-07 59.3 68 45.6
C02p17640 Brassica napus HOM05D002676 ORTHO05D003194 2.0e-07 59.3 68 45.6
BolC2t07895H Brassica oleracea HOM05D002676 ORTHO05D003194 2.0e-07 59.3 60 50.0
HanXRQChr04g0117931 Helianthus annuus HOM05D002676 ORTHO05D003194 2.0e-07 59.3 50 60.0
A02p10570 Brassica napus HOM05D002676 ORTHO05D003194 2.6e-07 58.9 60 50.0
BraA02t06122Z Brassica rapa HOM05D002676 ORTHO05D003194 2.6e-07 58.9 60 50.0
MBI12_g30149_MAGBIO Magnolia biondii HOM05D002676 ORTHO05D003194 2.6e-07 58.9 111 38.7
Nitab4.5_0004582g0060 Nicotiana tabacum HOM05D002676 ORTHO05D003194 2.6e-07 58.9 105 35.2
Sp6g16130 Schrenkiella parvula HOM05D002676 ORTHO05D003194 2.6e-07 58.9 73 43.8
BcaB08g35760 Brassica carinata HOM05D002676 ORTHO05D003194 3.4e-07 58.5 68 44.1
A01p18790 Brassica napus HOM05D002676 ORTHO05D003194 3.4e-07 58.5 105 37.1
A10p11390 Brassica napus HOM05D002676 ORTHO05D003194 3.4e-07 58.5 47 53.2
BraA01t01823Z Brassica rapa HOM05D002676 ORTHO05D003194 3.4e-07 58.5 105 37.1
CAN.G303.47 Capsicum annuum HOM05D002676 ORTHO05D003194 3.4e-07 58.5 105 37.1
Manes.05G196100 Manihot esculenta HOM05D002676 ORTHO05D003194 3.4e-07 58.5 100 35.0
Nitab4.5_0003561g0010 Nicotiana tabacum HOM05D002676 ORTHO05D003194 3.4e-07 58.5 50 52.0
Peaxi162Scf01026g00243 Petunia axillaris HOM05D002676 ORTHO05D003194 3.4e-07 58.5 104 36.5
arahy.Tifrunner.gnm1.ann1.9VIW60 Arachis hypogaea HOM05D002676 ORTHO05D003194 4.5e-07 58.2 111 36.0
BcaB01g04272 Brassica carinata HOM05D002676 ORTHO05D003194 4.5e-07 58.2 47 55.3
BcaNung07039 Brassica carinata HOM05D002676 ORTHO05D003194 4.5e-07 58.2 105 37.1
C01p23730 Brassica napus HOM05D002676 ORTHO05D003194 4.5e-07 58.2 105 37.1
BolC1t02325H Brassica oleracea HOM05D002676 ORTHO05D003194 4.5e-07 58.2 105 37.1
Sc19g0000430 Simmondsia chinensis HOM05D002676 ORTHO05D003194 4.5e-07 58.2 104 37.5
TPR.G35914 Trifolium pratense HOM05D002676 ORTHO05D003194 4.5e-07 58.2 107 32.7
TAR627G0627 Trochodendron aralioides HOM05D002676 ORTHO05D003194 4.5e-07 58.2 66 47.0
vmacro06467 Vaccinium macrocarpon HOM05D002676 ORTHO05D003194 4.5e-07 58.2 110 37.3
BcaB01g04275 Brassica carinata HOM05D002676 ORTHO05D003194 5.8e-07 57.8 71 43.7
BcaC01g06285 Brassica carinata HOM05D002676 ORTHO05D003194 5.8e-07 57.8 71 43.7
A03p14800 Brassica napus HOM05D002676 ORTHO05D003194 5.8e-07 57.8 71 43.7
C03p17290 Brassica napus HOM05D002676 ORTHO05D003194 5.8e-07 57.8 71 43.7
BolC3t14143H Brassica oleracea HOM05D002676 ORTHO05D003194 5.8e-07 57.8 71 43.7
BraA03t10773Z Brassica rapa HOM05D002676 ORTHO05D003194 5.8e-07 57.8 71 43.7
CDE09G0132 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 5.8e-07 57.8 102 41.2
Cc02_g00670 Coffea canephora HOM05D002676 ORTHO05D003194 5.8e-07 57.8 106 38.7
Solyc03g080050.3 Solanum lycopersicum HOM05D002676 ORTHO05D003194 5.8e-07 57.8 108 37.0
BcaB05g22110 Brassica carinata HOM05D002676 ORTHO05D003194 7.6e-07 57.4 61 45.9
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 7.6e-07 57.4 97 38.1
Glyma.06G138500 Glycine max HOM05D002676 ORTHO05D003194 7.6e-07 57.4 106 34.9
SalBow4G0400 Salvia bowleyana HOM05D002676 ORTHO05D003194 7.6e-07 57.4 103 35.9
SalBow4G1608 Salvia bowleyana HOM05D002676 ORTHO05D003194 7.6e-07 57.4 103 35.9
ATR0579G011 Amborella trichopoda HOM05D002676 ORTHO05D003194 9.9e-07 57.0 100 35.0
BcaC04g20392 Brassica carinata HOM05D002676 ORTHO05D003194 9.9e-07 57.0 47 51.1
C09p44190 Brassica napus HOM05D002676 ORTHO05D003194 9.9e-07 57.0 47 51.1
BolC9t57291H Brassica oleracea HOM05D002676 ORTHO05D003194 9.9e-07 57.0 47 51.1
BraA10t43233Z Brassica rapa HOM05D002676 ORTHO05D003194 9.9e-07 57.0 47 51.1
Duzib205G1101 Durio zibethinus HOM05D002676 ORTHO05D003194 9.9e-07 57.0 105 34.3
Lsat_1_v5_gn_2_135521 Lactuca sativa HOM05D002676 ORTHO05D003194 9.9e-07 57.0 102 39.2
Phvul.009G039300 Phaseolus vulgaris HOM05D002676 ORTHO05D003194 9.9e-07 57.0 104 31.7
Sp7g25510 Schrenkiella parvula HOM05D002676 ORTHO05D003194 9.9e-07 57.0 105 36.2
AT4G27585 Arabidopsis thaliana HOM05D002676 ORTHO05D003194 1.3e-06 56.6 108 35.2
Ca_16795_v3 Cicer arietinum L. HOM05D002676 ORTHO05D003194 1.3e-06 56.6 105 33.3
Dinv29198 Davidia involucrata HOM05D002676 ORTHO05D003194 1.3e-06 56.6 108 37.0
Duzib068G1387 Durio zibethinus HOM05D002676 ORTHO05D003194 1.3e-06 56.6 105 35.2
SGA_v2.0_scaffold44G16866 Striga asiatica HOM05D002676 ORTHO05D003194 1.3e-06 56.6 107 36.4
Hma1.2p1_0115F.1_g055650 Hydrangea macrophylla HOM05D002676 ORTHO05D003194 1.7e-06 56.2 106 38.7
Medtr3g093220 Medicago truncatula HOM05D002676 ORTHO05D003194 1.7e-06 56.2 103 33.0
Nn1g00477 Nelumbo nucifera HOM05D002676 ORTHO05D003194 1.7e-06 56.2 70 45.7
Oeu055417.1 Olea europaea HOM05D002676 ORTHO05D003194 1.7e-06 56.2 102 33.3
Sed0003975 Sechium edule HOM05D002676 ORTHO05D003194 1.7e-06 56.2 99 34.3
SGA_v2.0_scaffold141G35589 Striga asiatica HOM05D002676 ORTHO05D003194 1.7e-06 56.2 50 52.0
TWI14G1344 Tripterygium wilfordii HOM05D002676 ORTHO05D003194 1.7e-06 56.2 101 40.6
AL7G25170 Arabidopsis lyrata HOM05D002676 ORTHO05D003194 2.2e-06 55.8 108 35.2
VMungo1309G0526 Vigna mungo HOM05D002676 ORTHO05D003194 2.2e-06 55.8 104 32.7
Aqoxy5G04376 Aquilegia oxysepala HOM05D002676 ORTHO05D003194 2.9e-06 55.5 109 39.4
AT5G54100 Arabidopsis thaliana HOM05D002676 ORTHO05D003194 2.9e-06 55.5 57 49.1
BcaC03g14323 Brassica carinata HOM05D002676 ORTHO05D003194 2.9e-06 55.5 61 45.9
Lalb_Chr08g0239461 Lupinus albus HOM05D002676 ORTHO05D003194 2.9e-06 55.5 101 30.7
C02p17630 Brassica napus HOM05D002676 ORTHO05D003194 3.8e-06 55.1 61 45.9
BolC2t07894H Brassica oleracea HOM05D002676 ORTHO05D003194 3.8e-06 55.1 61 45.9
BraA02t06121Z Brassica rapa HOM05D002676 ORTHO05D003194 3.8e-06 55.1 61 45.9
Cpa.g.sc3.176 Carica papaya HOM05D002676 ORTHO05D003194 3.8e-06 55.1 105 32.4
Lalb_Chr11g0067521 Lupinus albus HOM05D002676 ORTHO05D003194 3.8e-06 55.1 106 31.1
PGSC0003DMG400026924 Solanum tuberosum HOM05D002676 ORTHO05D003194 3.8e-06 55.1 50 50.0
vmacro10169 Vaccinium macrocarpon HOM05D002676 ORTHO05D003194 3.8e-06 55.1 79 41.8
arahy.Tifrunner.gnm1.ann1.989YCX Arachis hypogaea HOM05D002676 ORTHO05D003194 4.9e-06 54.7 103 34.0
arahy.Tifrunner.gnm1.ann1.VNL2K0 Arachis hypogaea HOM05D002676 ORTHO05D003194 4.9e-06 54.7 49 51.0
EL10Ac3g05141 Beta vulgaris HOM05D002676 ORTHO05D003194 4.9e-06 54.7 102 33.3
CiPaw.05G208000 Carya illinoinensis HOM05D002676 ORTHO05D003194 4.9e-06 54.7 104 31.7
Thecc.03G211300 Theobroma cacao HOM05D002676 ORTHO05D003194 4.9e-06 54.7 109 33.0
AL8G29230 Arabidopsis lyrata HOM05D002676 ORTHO05D003194 6.4e-06 54.3 53 49.1
CAN.G65.146 Capsicum annuum HOM05D002676 ORTHO05D003194 6.4e-06 54.3 86 37.2
Os08g0158500 Oryza sativa ssp. japonica HOM05D002676 ORTHO05D003194 8.4e-06 53.9 103 35.9
Solyc06g073030.3 Solanum lycopersicum HOM05D002676 ORTHO05D003194 8.4e-06 53.9 50 48.0
Sopen06g029380 Solanum pennellii HOM05D002676 ORTHO05D003194 8.4e-06 53.9 50 48.0


User provided reference genes

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