Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G3475 Fragaria x ananassa HOM05D003699 ORTHO05D004474 6.6e-122 440.7 214 100.0
FAN10G1328 Fragaria x ananassa HOM05D003699 ORTHO05D004474 2.1e-67 259.6 177 74.6
RcHm_v2.0_Chr1g0375981 Rosa chinensis HOM05D003699 ORTHO05D004474 2.9e-53 212.6 152 70.4
Prupe.2G285700 Prunus persica HOM05D003699 ORTHO05D004474 9.8e-49 197.6 152 65.1
TAR375G0673 Trochodendron aralioides HOM05D003699 ORTHO05D004474 1.4e-47 193.7 152 65.1
MBI04_g06627_MAGBIO Magnolia biondii HOM05D003699 ORTHO05D004474 1.2e-46 190.7 152 63.2
Cfa008249 Carpinus fangiana HOM05D003699 ORTHO05D004474 1.3e-45 187.2 152 63.2
Aqoxy7G00521 Aquilegia oxysepala HOM05D003699 ORTHO05D004474 2.3e-45 186.4 152 61.2
Hma1.2p1_0488F.1_g163830 Hydrangea macrophylla HOM05D003699 ORTHO05D004474 5.0e-45 185.3 151 62.9
Haze_13802 Corylus avellana HOM05D003699 ORTHO05D004474 6.6e-45 184.9 151 62.3
Cc02_g03690 Coffea canephora HOM05D003699 ORTHO05D004474 9.5e-44 181.0 152 61.2
Cpa.g.sc4.178 Carica papaya HOM05D003699 ORTHO05D004474 1.6e-43 180.3 152 59.2
Actinidia32916 Actinidia chinensis HOM05D003699 ORTHO05D004474 3.6e-43 179.1 152 57.9
Rhsim03G0173500 Rhododendron simsii HOM05D003699 ORTHO05D004474 3.6e-43 179.1 152 59.2
QL12p039078 Quercus lobata HOM05D003699 ORTHO05D004474 8.0e-43 177.9 151 60.3
Glyma.09G150200 Glycine max HOM05D003699 ORTHO05D004474 1.0e-42 177.6 152 59.9
CANSAT21G1948 Cannabis sativa HOM05D003699 ORTHO05D004474 1.4e-42 177.2 152 59.9
CDE08G1313 Ceratophyllum demersum HOM05D003699 ORTHO05D004474 1.4e-42 177.2 151 57.6
Oeu030154.1 Olea europaea HOM05D003699 ORTHO05D004474 1.8e-42 176.8 151 58.3
Lj2g0006173 Lotus japonicus HOM05D003699 ORTHO05D004474 3.0e-42 176.0 152 59.9
Hund04668 Selenicereus undatus HOM05D003699 ORTHO05D004474 4.0e-42 175.6 152 57.9
CiPaw.04G064600 Carya illinoinensis HOM05D003699 ORTHO05D004474 8.9e-42 174.5 150 61.3
EL10Ac3g05759 Beta vulgaris HOM05D003699 ORTHO05D004474 1.5e-41 173.7 152 58.6
FAN06G1157 Fragaria x ananassa HOM05D003699 ORTHO05D004474 2.0e-41 173.3 95 88.4
Lalb_Chr03g0032981 Lupinus albus HOM05D003699 ORTHO05D004474 3.4e-41 172.6 152 57.2
VMungo0464G0389 Vigna mungo HOM05D003699 ORTHO05D004474 2.2e-40 169.9 152 58.6
Glyma.16G201600 Glycine max HOM05D003699 ORTHO05D004474 3.7e-40 169.1 152 57.2
ATR0618G031 Amborella trichopoda HOM05D003699 ORTHO05D004474 2.4e-39 166.4 152 55.3
AUR62016075 Chenopodium quinoa HOM05D003699 ORTHO05D004474 3.2e-39 166.0 152 55.9
Dinv28516 Davidia involucrata HOM05D003699 ORTHO05D004474 3.2e-39 166.0 142 61.3
SalBow4G1619 Salvia bowleyana HOM05D003699 ORTHO05D004474 3.2e-39 166.0 152 57.2
Migut.F00407 Erythranthe guttata HOM05D003699 ORTHO05D004474 4.1e-39 165.6 152 55.3
Phvul.004G124500 Phaseolus vulgaris HOM05D003699 ORTHO05D004474 4.1e-39 165.6 146 58.2
Ah.07g208500 Amaranthus hybridus HOM05D003699 ORTHO05D004474 9.2e-39 164.5 152 53.9
DCAR_027549 Daucus carota HOM05D003699 ORTHO05D004474 9.2e-39 164.5 167 50.3
Manes.06G140300 Manihot esculenta HOM05D003699 ORTHO05D004474 1.2e-38 164.1 153 56.9
Hund15969 Selenicereus undatus HOM05D003699 ORTHO05D004474 1.6e-38 163.7 167 49.7
Dinv34414 Davidia involucrata HOM05D003699 ORTHO05D004474 2.7e-38 162.9 167 50.3
Aqoxy2G00938 Aquilegia oxysepala HOM05D003699 ORTHO05D004474 3.5e-38 162.5 152 52.6
SalBow6G1828 Salvia bowleyana HOM05D003699 ORTHO05D004474 3.5e-38 162.5 152 52.0
Cc02_g06810 Coffea canephora HOM05D003699 ORTHO05D004474 4.6e-38 162.2 167 51.5
Nn6g34343 Nelumbo nucifera HOM05D003699 ORTHO05D004474 5.9e-38 161.8 152 57.2
TAR633G0267 Trochodendron aralioides HOM05D003699 ORTHO05D004474 5.9e-38 161.8 152 51.3
Hma1.2p1_1409F.1_g281620 Hydrangea macrophylla HOM05D003699 ORTHO05D004474 1.0e-37 161.0 172 48.3
Cpa.g.sc19.204 Carica papaya HOM05D003699 ORTHO05D004474 2.3e-37 159.8 152 52.0
Oeu017569.2 Olea europaea HOM05D003699 ORTHO05D004474 3.9e-37 159.1 153 51.6
vmacro06753 Vaccinium macrocarpon HOM05D003699 ORTHO05D004474 3.9e-37 159.1 152 52.6
Migut.F01417 Erythranthe guttata HOM05D003699 ORTHO05D004474 8.6e-37 157.9 152 51.3
FvH4_7g27500 Fragaria vesca HOM05D003699 ORTHO05D004474 8.6e-37 157.9 123 65.9
Duzib114G0850 Durio zibethinus HOM05D003699 ORTHO05D004474 1.1e-36 157.5 151 51.7
Duzib128G1461 Durio zibethinus HOM05D003699 ORTHO05D004474 1.1e-36 157.5 151 51.0
Nn2g11418 Nelumbo nucifera HOM05D003699 ORTHO05D004474 1.5e-36 157.1 152 50.0
MSTRG.8317 Avicennia marina HOM05D003699 ORTHO05D004474 1.9e-36 156.8 152 51.3
unitig_62.g23932 Utricularia gibba HOM05D003699 ORTHO05D004474 1.9e-36 156.8 147 51.7
PGR142G0530 Punica granatum HOM05D003699 ORTHO05D004474 2.5e-36 156.4 152 48.7
Eucgr.G03038 Eucalyptus grandis HOM05D003699 ORTHO05D004474 3.3e-36 156.0 151 51.7
Thecc.10G023400 Theobroma cacao HOM05D003699 ORTHO05D004474 3.3e-36 156.0 151 50.3
AUR62022855 Chenopodium quinoa HOM05D003699 ORTHO05D004474 4.3e-36 155.6 167 49.7
HPP92_012632 Vanilla planifolia HOM05D003699 ORTHO05D004474 5.6e-36 155.2 152 53.3
CSS0013577 Camellia sinensis var. sinensis HOM05D003699 ORTHO05D004474 7.3e-36 154.8 167 47.3
Medtr5g082110 Medicago truncatula HOM05D003699 ORTHO05D004474 7.3e-36 154.8 153 52.3
Phvul.008G225700 Phaseolus vulgaris HOM05D003699 ORTHO05D004474 7.3e-36 154.8 152 52.0
Gohir.D04G066900 Gossypium hirsutum HOM05D003699 ORTHO05D004474 9.5e-36 154.5 151 49.7
Gorai.012G075900 Gossypium raimondii HOM05D003699 ORTHO05D004474 9.5e-36 154.5 151 49.7
CANSAT56G1358 Cannabis sativa HOM05D003699 ORTHO05D004474 1.2e-35 154.1 152 48.7
DCAR_011795 Daucus carota HOM05D003699 ORTHO05D004474 1.2e-35 154.1 167 46.7
Glyma.02G255100 Glycine max HOM05D003699 ORTHO05D004474 1.2e-35 154.1 153 51.6
Lj8A71T56 Lonicera japonica HOM05D003699 ORTHO05D004474 1.2e-35 154.1 172 47.7
Potri.008G065800 Populus trichocarpa HOM05D003699 ORTHO05D004474 1.2e-35 154.1 152 50.0
arahy.Tifrunner.gnm1.ann1.DW27I3 Arachis hypogaea HOM05D003699 ORTHO05D004474 1.6e-35 153.7 152 51.3
arahy.Tifrunner.gnm1.ann1.KJJE32 Arachis hypogaea HOM05D003699 ORTHO05D004474 1.6e-35 153.7 152 51.3
AUR62012223 Chenopodium quinoa HOM05D003699 ORTHO05D004474 1.6e-35 153.7 167 47.9
Ca_05944_v3 Cicer arietinum L. HOM05D003699 ORTHO05D004474 1.6e-35 153.7 153 51.6
Nn1g01150 Nelumbo nucifera HOM05D003699 ORTHO05D004474 1.6e-35 153.7 131 61.1
TWI53G0524 Tripterygium wilfordii HOM05D003699 ORTHO05D004474 1.6e-35 153.7 152 52.0
EL10Ac2g04802 Beta vulgaris HOM05D003699 ORTHO05D004474 2.1e-35 153.3 167 47.3
SEGI_11650 Sequoiadendron giganteum HOM05D003699 ORTHO05D004474 2.1e-35 153.3 148 52.0
MSTRG.222 Avicennia marina HOM05D003699 ORTHO05D004474 2.8e-35 152.9 152 50.0
Manes.10G016400 Manihot esculenta HOM05D003699 ORTHO05D004474 2.8e-35 152.9 153 51.0
Psat2g034840 Pisum sativum HOM05D003699 ORTHO05D004474 2.8e-35 152.9 153 51.6
TPR.G19864 Trifolium pratense HOM05D003699 ORTHO05D004474 2.8e-35 152.9 153 52.3
VMungo0647G0453 Vigna mungo HOM05D003699 ORTHO05D004474 2.8e-35 152.9 152 50.0
Eucgr.K00135 Eucalyptus grandis HOM05D003699 ORTHO05D004474 3.6e-35 152.5 152 51.3
GSVIVG01032860001 Vitis vinifera HOM05D003699 ORTHO05D004474 3.6e-35 152.5 152 48.0
Lj1C951T5 Lonicera japonica HOM05D003699 ORTHO05D004474 4.7e-35 152.1 152 50.7
MD01G1148500 Malus domestica HOM05D003699 ORTHO05D004474 4.7e-35 152.1 151 49.7
FAN01G2395 Fragaria x ananassa HOM05D003699 ORTHO05D004474 6.2e-35 151.8 153 50.3
Potri.010G191700 Populus trichocarpa HOM05D003699 ORTHO05D004474 6.2e-35 151.8 152 50.0
Prupe.2G247400 Prunus persica HOM05D003699 ORTHO05D004474 6.2e-35 151.8 152 50.0
RcHm_v2.0_Chr1g0369551 Rosa chinensis HOM05D003699 ORTHO05D004474 6.2e-35 151.8 152 49.3
Cfa001354 Carpinus fangiana HOM05D003699 ORTHO05D004474 8.0e-35 151.4 152 48.7
FAN03G3166 Fragaria x ananassa HOM05D003699 ORTHO05D004474 8.0e-35 151.4 153 50.3
FAN10G1948 Fragaria x ananassa HOM05D003699 ORTHO05D004474 8.0e-35 151.4 152 49.3
Lalb_Chr04g0250691 Lupinus albus HOM05D003699 ORTHO05D004474 8.0e-35 151.4 152 49.3
Lalb_Chr10g0105061 Lupinus albus HOM05D003699 ORTHO05D004474 8.0e-35 151.4 152 50.0
MBI14_g09435_MAGBIO Magnolia biondii HOM05D003699 ORTHO05D004474 8.0e-35 151.4 152 49.3
Manes.07G126700 Manihot esculenta HOM05D003699 ORTHO05D004474 8.0e-35 151.4 153 49.7
TWI09G1096 Tripterygium wilfordii HOM05D003699 ORTHO05D004474 1.0e-34 151.0 152 50.7
CiPaw.01G296600 Carya illinoinensis HOM05D003699 ORTHO05D004474 1.4e-34 150.6 152 50.0
Sc14g0005270 Simmondsia chinensis HOM05D003699 ORTHO05D004474 1.4e-34 150.6 167 48.5
arahy.Tifrunner.gnm1.ann1.828BJC Arachis hypogaea HOM05D003699 ORTHO05D004474 1.8e-34 150.2 152 50.7
arahy.Tifrunner.gnm1.ann1.DF90RT Arachis hypogaea HOM05D003699 ORTHO05D004474 1.8e-34 150.2 152 50.7
Lalb_Chr17g0346661 Lupinus albus HOM05D003699 ORTHO05D004474 2.3e-34 149.8 153 50.3
Os06g0705000 Oryza sativa ssp. japonica HOM05D003699 ORTHO05D004474 2.3e-34 149.8 152 51.3
AagrBONN_evm.TU.Sc2ySwM_344.2984 Anthoceros agrestis HOM05D003699 ORTHO05D004474 3.1e-34 149.4 151 49.0
CiPaw.02G190700 Carya illinoinensis HOM05D003699 ORTHO05D004474 3.1e-34 149.4 167 46.7
FvH4_7g24130 Fragaria vesca HOM05D003699 ORTHO05D004474 3.1e-34 149.4 152 49.3
FAN06G2830 Fragaria x ananassa HOM05D003699 ORTHO05D004474 3.1e-34 149.4 152 49.3
A09p48820 Brassica napus HOM05D003699 ORTHO05D004474 4.0e-34 149.1 153 49.0
BraA09t40335Z Brassica rapa HOM05D003699 ORTHO05D004474 4.0e-34 149.1 153 49.0
Lj6g0001965 Lotus japonicus HOM05D003699 ORTHO05D004474 4.0e-34 149.1 152 51.3
MD07G1215500 Malus domestica HOM05D003699 ORTHO05D004474 5.2e-34 148.7 151 48.3
C08p31150 Brassica napus HOM05D003699 ORTHO05D004474 8.9e-34 147.9 153 48.4
Gohir.A05G316100 Gossypium hirsutum HOM05D003699 ORTHO05D004474 1.2e-33 147.5 169 44.4
Sed0020578 Sechium edule HOM05D003699 ORTHO05D004474 1.5e-33 147.1 152 48.0
BolC8t50736H Brassica oleracea HOM05D003699 ORTHO05D004474 2.0e-33 146.7 152 48.7
Lsat_1_v5_gn_2_121421 Lactuca sativa HOM05D003699 ORTHO05D004474 2.0e-33 146.7 152 50.7
LjContig00357g0025877 Lotus japonicus HOM05D003699 ORTHO05D004474 2.0e-33 146.7 152 50.0
arahy.Tifrunner.gnm1.ann1.68I314 Arachis hypogaea HOM05D003699 ORTHO05D004474 2.6e-33 146.4 152 50.7
Aa31LG5G19610 Aethionema arabicum HOM05D003699 ORTHO05D004474 3.4e-33 146.0 152 48.0
BcaB01g00058 Brassica carinata HOM05D003699 ORTHO05D004474 3.4e-33 146.0 153 47.7
arahy.Tifrunner.gnm1.ann1.8Y7MPM Arachis hypogaea HOM05D003699 ORTHO05D004474 4.4e-33 145.6 152 50.7
arahy.Tifrunner.gnm1.ann1.VSX1SJ Arachis hypogaea HOM05D003699 ORTHO05D004474 4.4e-33 145.6 152 50.7
Sp5g06650 Schrenkiella parvula HOM05D003699 ORTHO05D004474 4.4e-33 145.6 152 47.4
AT3G55830 Arabidopsis thaliana HOM05D003699 ORTHO05D004474 5.8e-33 145.2 152 46.7
CARHR165940 Cardamine hirsuta HOM05D003699 ORTHO05D004474 7.5e-33 144.8 152 46.7
THA.LOC104824308 Tarenaya hassleriana HOM05D003699 ORTHO05D004474 7.5e-33 144.8 152 46.7
HanXRQChr07g0202501 Helianthus annuus HOM05D003699 ORTHO05D004474 9.8e-33 144.4 152 49.3
SMO364G0532 Selaginella moellendorffii HOM05D003699 ORTHO05D004474 9.8e-33 144.4 153 48.4
THA.LOC104810061 Tarenaya hassleriana HOM05D003699 ORTHO05D004474 9.8e-33 144.4 152 47.4
Carub.0005s2261 Capsella rubella HOM05D003699 ORTHO05D004474 1.3e-32 144.1 152 46.1
Thhalv10010522m.g Eutrema salsugineum HOM05D003699 ORTHO05D004474 1.3e-32 144.1 152 46.7
PSO210G5252 Papaver somniferum HOM05D003699 ORTHO05D004474 1.3e-32 144.1 152 48.0
AL5G37120 Arabidopsis lyrata HOM05D003699 ORTHO05D004474 2.2e-32 143.3 152 46.1
ECA233G4954 Erigeron canadensis HOM05D006949 ORTHO05D008621 4.9e-32 142.1 146 50.7
ClCG07G004050 Citrullus lanatus HOM05D003699 ORTHO05D004474 6.4e-32 141.7 153 47.1
Pp3c7_11620 Physcomitrium patens HOM05D003699 ORTHO05D004474 6.4e-32 141.7 153 48.4
SMO356G0263 Selaginella moellendorffii HOM05D003699 ORTHO05D004474 8.3e-32 141.4 150 47.3
Rhsim08G0206900 Rhododendron simsii HOM05D003699 ORTHO05D004474 2.4e-31 139.8 200 39.0
MELO3C034122.2 Cucumis melo HOM05D003699 ORTHO05D004474 2.7e-30 136.3 150 47.3
Dinv20964 Davidia involucrata HOM05D003699 ORTHO05D004474 2.7e-30 136.3 214 38.8
Dinv20979 Davidia involucrata HOM05D003699 ORTHO05D004474 2.7e-30 136.3 214 38.8
CsaV3_5G008970 Cucumis sativus L. HOM05D003699 ORTHO05D004474 3.5e-30 136.0 150 47.3
Atru.chr10.119 Acer truncatum HOM05D003699 ORTHO05D004474 4.6e-30 135.6 154 45.5
Haze_17194 Corylus avellana HOM05D003699 ORTHO05D004474 6.0e-30 135.2 119 52.9
SGA_v2.0_scaffold184G39954 Striga asiatica HOM05D000015 ORTHO05D000270 6.0e-30 135.2 138 49.3
Ciclev10032067m.g Citrus clementina HOM05D003699 ORTHO05D004474 1.7e-29 133.7 151 45.7
Mapoly0006s0046 Marchantia polymorpha HOM05D003699 ORTHO05D004474 2.3e-29 133.3 154 46.1
Sabra08G0048200 Salix brachista HOM05D003699 ORTHO05D004474 3.9e-29 132.5 192 39.1
Atru.chr10.101 Acer truncatum HOM05D003699 ORTHO05D004474 4.3e-28 129.0 151 44.4
SMO197G0083 Selaginella moellendorffii HOM05D003699 ORTHO05D004474 1.2e-27 127.5 118 51.7
CSS0037512 Camellia sinensis var. sinensis HOM05D003699 ORTHO05D004474 4.6e-22 109.0 104 51.9
SEGI_16324 Sequoiadendron giganteum HOM05D003699 ORTHO05D004474 1.3e-21 107.5 99 54.5
ATR0661G209 Amborella trichopoda HOM05D003699 ORTHO05D004474 1.1e-20 104.4 98 54.1
AUR62021284 Chenopodium quinoa HOM05D003699 ORTHO05D004474 3.1e-18 96.3 98 51.0
vmacro06985 Vaccinium macrocarpon HOM05D003699 ORTHO05D004474 5.2e-18 95.5 162 36.4
COL.COLO4_25638 Corchorus olitorius HOM05D003699 ORTHO05D004474 2.6e-17 93.2 97 48.5
Glyma.14G061400 Glycine max HOM05D003699 ORTHO05D004474 4.4e-17 92.4 98 48.0
SEGI_25549 Sequoiadendron giganteum HOM05D003699 ORTHO05D004474 5.8e-17 92.0 77 54.5
Thecc.03G165400 Theobroma cacao HOM05D003699 ORTHO05D004474 1.3e-16 90.9 113 46.0
Sc19g0001790 Simmondsia chinensis HOM05D003699 ORTHO05D004474 1.9e-15 87.0 76 51.3
Actinidia13534 Actinidia chinensis HOM05D003699 ORTHO05D004474 3.9e-13 79.3 101 45.5
ECA238G4741 Erigeron canadensis HOM05D003699 ORTHO05D004474 1.1e-12 77.8 76 55.3
Actinidia29685 Actinidia chinensis HOM05D003699 ORTHO05D004474 4.3e-12 75.9 58 56.9
Zm00001eb227330 Zea mays HOM05D003699 ORTHO05D004474 1.8e-10 70.5 76 44.7
FAN06G2762 Fragaria x ananassa HOM05D003699 ORTHO05D004474 2.0e-09 67.0 48 75.0
SHI03483 Sapria himalayana HOM05D003699 ORTHO05D004474 4.4e-09 65.9 86 38.4
Atru.chr10.7 Acer truncatum HOM05D003699 ORTHO05D004474 4.9e-08 62.4 78 39.7
PRCOL_00005734 Prasinoderma coloniale HOM05D003699 ORTHO05D004474 1.4e-07 60.8 124 32.3
THA.LOC104810185 Tarenaya hassleriana HOM05D003699 ORTHO05D004474 4.2e-07 59.3 49 53.1
A04p04200 Brassica napus HOM05D003699 ORTHO05D041519 5.4e-07 58.9 51 49.0
FAN06G0797 Fragaria x ananassa HOM05D003699 ORTHO05D004474 9.3e-07 58.2 70 47.1
MD01G1191300 Malus domestica HOM05D003699 ORTHO05D004474 2.7e-06 56.6 45 60.0


User provided reference genes

Program Settings