Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 7.1e-303 1043.1 521 100.0
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.5e-300 1034.6 519 99.2
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 5.5e-295 1016.9 521 97.3
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 9.3e-295 1016.1 521 97.1
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 9.6e-292 1006.1 522 96.9
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.8e-291 1003.8 522 96.7
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 8.5e-256 886.7 509 87.4
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 1.3e-211 740.0 538 72.1
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 2.1e-209 732.6 539 72.0
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 6.0e-201 704.5 433 79.9
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 3.8e-195 685.3 354 96.9
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 1.4e-189 666.8 529 67.3
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 1.8e-189 666.4 540 66.7
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 2.7e-185 652.5 541 64.3
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 6.7e-184 647.9 465 69.9
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 4.3e-183 645.2 515 65.8
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 2.1e-182 642.9 525 65.0
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.0e-180 636.3 465 68.8
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 2.6e-180 636.0 529 64.8
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 2.9e-179 632.5 529 63.7
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 1.1e-178 630.6 498 67.1
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 1.9e-178 629.8 547 63.1
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 7.1e-178 627.9 508 65.6
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 3.0e-176 622.5 513 65.3
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 3.9e-176 622.1 537 63.7
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 8.7e-176 620.9 509 64.2
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 3.3e-175 619.0 552 61.8
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 1.6e-174 616.7 548 61.9
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 1.1e-173 614.0 427 72.1
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 2.4e-173 612.8 505 64.0
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 1.2e-172 610.5 518 63.9
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 2.6e-172 609.4 505 64.4
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 1.0e-171 607.4 541 62.5
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 2.2e-171 606.3 508 64.0
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 4.9e-171 605.1 483 65.4
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 6.5e-171 604.7 506 64.4
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 9.3e-170 600.9 511 63.6
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 2.1e-169 599.7 466 65.2
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 3.5e-169 599.0 456 68.6
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 1.0e-168 597.4 520 61.9
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 2.3e-168 596.3 485 64.9
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 3.9e-168 595.5 459 67.8
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 5.1e-168 595.1 529 62.9
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 1.5e-167 593.6 472 65.5
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 3.3e-167 592.4 471 63.9
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 5.7e-167 591.7 459 67.1
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 9.7e-167 590.9 476 65.3
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 9.7e-167 590.9 511 63.8
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 2.8e-166 589.3 459 66.9
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 4.8e-166 588.6 587 57.1
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 6.3e-166 588.2 507 61.9
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 1.8e-165 586.6 458 68.6
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 2.4e-165 586.3 517 61.7
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 5.3e-165 585.1 518 61.2
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 5.3e-165 585.1 460 66.5
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 6.9e-165 584.7 513 62.2
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 6.9e-165 584.7 465 66.9
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 1.0e-163 580.9 530 59.1
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 1.0e-163 580.9 512 60.9
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 1.3e-163 580.5 525 60.4
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 1.3e-163 580.5 518 61.8
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 4.2e-162 575.5 535 60.4
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 5.5e-162 575.1 469 64.6
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 9.4e-162 574.3 526 61.2
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 2.1e-161 573.2 456 64.5
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 2.7e-161 572.8 527 58.8
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 4.6e-161 572.0 492 62.0
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 6.1e-161 571.6 468 61.8
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 3.0e-160 569.3 467 62.7
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 3.0e-160 569.3 477 61.8
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 2.0e-159 566.6 501 61.1
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 3.3e-159 565.8 436 66.3
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 3.3e-159 565.8 524 59.9
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 9.7e-159 564.3 505 61.0
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 1.7e-158 563.5 539 57.5
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 4.8e-158 562.0 513 59.6
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 4.8e-158 562.0 513 59.5
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 1.1e-157 560.8 513 59.5
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 2.4e-157 559.7 466 62.7
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 4.1e-157 558.9 459 61.9
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 6.9e-157 558.1 500 60.6
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 3.4e-156 555.8 476 61.8
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 1.3e-155 553.9 514 59.9
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 2.2e-155 553.1 500 60.0
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 1.4e-152 543.9 462 60.8
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 2.3e-152 543.1 425 64.9
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 8.8e-152 541.2 464 62.9
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 2.0e-151 540.0 518 57.1
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 5.7e-151 538.5 515 58.3
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 1.8e-149 533.5 445 63.1
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 4.1e-149 532.3 454 63.2
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 9.1e-149 531.2 412 65.3
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 2.2e-147 526.6 501 57.3
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 2.9e-147 526.2 515 56.7
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 1.5e-146 523.9 524 55.3
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 9.4e-146 521.2 550 53.8
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 7.2e-138 495.0 499 54.5
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 1.5e-135 487.3 646 46.9
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 1.3e-134 484.2 500 53.0
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 1.3e-134 484.2 341 72.4
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 1.3e-134 484.2 331 74.3
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 5.3e-133 478.8 497 55.1
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 1.7e-131 473.8 517 51.6
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 2.1e-129 466.8 447 58.2
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 6.1e-129 465.3 524 52.1
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 4.0e-128 462.6 405 60.5
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 5.9e-124 448.7 231 97.0
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 3.3e-122 443.0 515 49.9
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 1.5e-103 380.9 285 69.1
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 1.9e-101 374.0 441 49.2
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 9.5e-98 361.7 481 47.4
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 2.3e-96 357.1 367 52.3
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 4.0e-88 329.7 260 64.6
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 1.2e-84 318.2 286 55.6
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 1.2e-84 318.2 515 40.8
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 1.9e-69 267.7 520 35.6
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 2.7e-68 263.8 373 41.3
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 1.3e-65 255.0 287 47.7
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 4.3e-58 229.9 542 30.8
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 6.5e-46 189.5 245 46.1
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 1.6e-36 158.3 132 56.8
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 1.1e-34 152.1 197 37.1
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 4.1e-32 143.7 95 72.6
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 5.5e-29 133.3 233 40.3
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 6.7e-27 126.3 163 49.7
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 1.3e-25 122.1 80 71.2
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 6.5e-22 109.8 63 79.4
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 7.2e-13 79.7 83 49.4
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.2e-12 79.0 108 49.1
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 5.0e-06 57.0 49 63.3


User provided reference genes

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