Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2479.1 1260 100.0
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2370.5 1218 99.2
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2280.4 1220 95.7
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2271.5 1223 95.2
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2267.7 1219 95.4
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2267.3 1223 95.3
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 0.0e+00 2196.8 1179 95.6
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2121.7 1141 95.3
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 0.0e+00 1931.0 1183 85.5
Prupe.2G299600 Prunus persica HOM05D006627 ORTHO05D007753 0.0e+00 1261.1 1269 60.3
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 0.0e+00 1164.8 1243 58.0
MD01G1207000 Malus domestica HOM05D006627 ORTHO05D007753 0.0e+00 1154.4 1344 54.4
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 2.9e-148 530.8 1252 38.1
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 1.7e-137 495.0 1315 35.5
Duzib205G1471 Durio zibethinus HOM05D006627 ORTHO05D007753 1.2e-130 472.2 1285 35.0
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 1.3e-121 442.2 1232 35.6
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 1.3e-121 442.2 1235 35.5
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 1.1e-120 439.1 1228 34.4
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 5.6e-120 436.8 1259 33.4
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 3.1e-118 431.0 1172 34.8
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 1.5e-117 428.7 1309 34.3
Sabra04G0052500 Salix brachista HOM05D006627 ORTHO05D007753 1.7e-116 425.2 1333 33.2
Potri.004G079000 Populus trichocarpa HOM05D006627 ORTHO05D007753 1.9e-112 411.8 1314 32.7
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 4.5e-109 400.6 1203 33.2
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 6.7e-105 386.7 1172 34.0
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 8.7e-105 386.3 1292 32.8
Potri.017G142600 Populus trichocarpa HOM05D006627 ORTHO05D007753 5.7e-104 383.6 1230 33.3
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 7.4e-104 383.3 1279 33.1
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 2.6e-101 374.8 1170 33.9
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 4.5e-101 374.0 1170 33.9
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 4.2e-99 367.5 1422 30.5
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 5.5e-99 367.1 1490 30.9
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 1.0e-97 362.8 1250 32.6
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 1.0e-97 362.8 1250 32.6
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 3.9e-97 360.9 1453 30.2
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 2.6e-93 348.2 1164 31.5
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 1.1e-91 342.8 1327 31.5
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 3.2e-91 341.3 1471 29.4
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 1.2e-90 339.3 1275 31.1
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.6e-82 312.4 1380 30.1
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 1.7e-71 275.8 1217 30.6
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 1.7e-71 275.8 1408 28.6
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 8.3e-71 273.5 1311 28.9
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 3.5e-69 268.1 1236 29.1
Oeu060456.3 Olea europaea HOM05D006627 ORTHO05D007753 3.5e-69 268.1 1291 28.9
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 5.9e-69 267.3 1084 31.4
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 5.9e-69 267.3 1084 31.4
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 3.8e-68 264.6 1306 28.6
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 2.7e-66 258.5 1455 27.7
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 8.0e-66 256.9 1238 29.2
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 2.8e-63 248.4 1564 26.3
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 1.4e-62 246.1 1211 28.7
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 1.2e-58 233.0 1422 28.7
Cfa012198 Carpinus fangiana HOM05D006627 ORTHO05D007753 2.8e-58 231.9 1413 27.9
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 2.3e-57 228.8 1239 27.8
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 8.9e-57 226.9 1214 28.6
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 2.7e-53 215.3 1271 27.1
Peaxi162Scf00444g00008 Petunia axillaris HOM05D006627 ORTHO05D007753 7.8e-53 213.8 1314 27.4
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 1.7e-52 212.6 1220 28.1
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 3.3e-51 208.4 1360 26.7
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 2.8e-50 205.3 1211 27.3
Cc02_g02490 Coffea canephora HOM05D006627 ORTHO05D007753 1.0e-49 203.4 1271 28.0
Peaxi162Scf00618g00717 Petunia axillaris HOM05D006627 ORTHO05D007753 3.1e-49 201.8 1311 26.9
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 1.7e-47 196.1 1082 27.5
DCAR_009389 Daucus carota HOM05D006627 ORTHO05D007753 3.7e-47 194.9 1279 26.3
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 8.6e-44 183.7 1250 26.7
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 1.2e-42 179.9 380 38.4
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 2.8e-42 178.7 1246 26.2
THA.LOC104800273 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 6.2e-42 177.6 1172 27.4
MSTRG.27091 Avicennia marina HOM05D006627 ORTHO05D007753 7.5e-40 170.6 1254 27.0
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 1.7e-39 169.5 1277 26.7
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 2.2e-39 169.1 1196 25.8
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 1.4e-38 166.4 1235 26.5
CAN.G236.7 Capsicum annuum HOM05D006627 ORTHO05D007753 1.9e-38 166.0 1175 25.4
Dinv35244 Davidia involucrata HOM05D006627 ORTHO05D007753 7.1e-38 164.1 219 49.3
Aa31LG3G8880 Aethionema arabicum HOM05D008661 ORTHO05D010872 1.6e-37 162.9 1165 26.8
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 1.6e-37 162.9 1326 27.6
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 7.8e-37 160.6 1275 25.9
Ah.07g206700 Amaranthus hybridus HOM05D006627 ORTHO05D007753 2.3e-36 159.1 1458 24.3
AUR62031403 Chenopodium quinoa HOM05D006627 ORTHO05D007753 5.1e-36 157.9 1319 27.0
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 6.6e-36 157.5 1214 27.3
HanXRQChr13g0394821 Helianthus annuus HOM05D006627 ORTHO05D007753 1.9e-35 156.0 1239 26.1
Hma1.2p1_0327F.1_g126380 Hydrangea macrophylla HOM05D006627 ORTHO05D007753 2.1e-34 152.5 597 33.0
EL10Ac5g12811 Beta vulgaris HOM05D006627 ORTHO05D007753 8.1e-34 150.6 1407 25.0
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 4.0e-33 148.3 1324 26.3
RcHm_v2.0_Chr5g0081641 Rosa chinensis HOM05D006627 ORTHO05D007753 1.7e-31 142.9 279 38.4
MSTRG.8718 Avicennia marina HOM05D006627 ORTHO05D007753 1.1e-30 140.2 1262 25.2
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 1.1e-30 140.2 1052 27.2
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 7.1e-30 137.5 1138 25.4
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 1.2e-29 136.7 1196 25.4
PGSC0003DMG400010123 Solanum tuberosum HOM05D006627 ORTHO05D007753 1.2e-29 136.7 1158 25.9
BcaB03g12481 Brassica carinata HOM05D008661 ORTHO05D010872 7.8e-29 134.0 1183 26.4
Manes.02G019000 Manihot esculenta HOM05D006627 ORTHO05D007753 1.7e-28 132.9 1269 25.7
EL10Ac3g05437 Beta vulgaris HOM05D006627 ORTHO05D007753 6.6e-28 131.0 1387 25.0
Thhalv10024596m.g Eutrema salsugineum HOM05D008661 ORTHO05D010872 1.9e-27 129.4 498 33.5
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 6.8e-25 120.9 348 31.3
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 5.8e-24 117.9 318 34.6
CARHR233070 Cardamine hirsuta HOM05D008661 ORTHO05D010872 7.6e-24 117.5 1173 26.3
BcaB03g12479 Brassica carinata HOM05D008661 ORTHO05D010872 4.2e-22 111.7 617 30.8
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 3.5e-21 108.6 1144 25.8
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 3.5e-21 108.6 1144 25.8
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 1.0e-20 107.1 1142 25.0
Solyc03g025150.4 Solanum lycopersicum HOM05D006627 ORTHO05D007753 1.0e-20 107.1 1111 23.7
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 1.3e-20 106.7 1142 24.8
Migut.F00307 Erythranthe guttata HOM05D006627 ORTHO05D007753 8.7e-20 104.0 1117 24.6
Sopen03g004000 Solanum pennellii HOM05D006627 ORTHO05D007753 1.1e-19 103.6 1128 24.2
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 1.5e-19 103.2 250 38.0
CDE07G1237 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 2.8e-18 99.0 724 26.0
Atru.chr9.2148 Acer truncatum HOM05D006627 ORTHO05D007753 2.4e-17 95.9 189 41.3
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 2.4e-17 95.9 372 29.8
Lsat_1_v5_gn_9_57440 Lactuca sativa HOM05D006627 ORTHO05D007753 3.1e-17 95.5 345 28.7
AL7G27440 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 1.5e-16 93.2 363 30.3
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 1.5e-16 93.2 897 24.2
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 4.4e-16 91.7 393 28.5
ECA232G3189 Erigeron canadensis HOM05D006627 ORTHO05D007753 4.9e-15 88.2 325 30.8
A08p21040 Brassica napus HOM05D008661 ORTHO05D010872 6.4e-15 87.8 406 27.8
AL8G26990 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 8.4e-15 87.4 236 33.5
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 1.9e-14 86.3 340 29.1
Zm00001eb179470 Zea mays HOM05D006627 ORTHO05D007753 1.9e-14 86.3 1458 22.6
Atru.chr9.2147 Acer truncatum HOM05D006627 ORTHO05D007753 1.2e-13 83.6 635 26.3
AT5G52530 Arabidopsis thaliana HOM05D008661 ORTHO05D010872 1.2e-13 83.6 240 33.3
Carub.0007s1533 Capsella rubella HOM05D008661 ORTHO05D010872 2.1e-13 82.8 312 28.5
unitig_46.g18802 Utricularia gibba HOM05D006627 ORTHO05D007753 3.5e-13 82.0 1183 22.9
TWI60G0847 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 4.6e-13 81.6 327 30.3
Dinv35243 Davidia involucrata HOM05D006627 ORTHO05D007753 6.6e-12 77.8 508 26.4
Sp6g14700 Schrenkiella parvula HOM05D008661 ORTHO05D010872 3.3e-11 75.5 313 29.4
HPP92_025630 Vanilla planifolia HOM05D006627 ORTHO05D007753 5.6e-11 74.7 309 28.8
HanXRQChr09g0252481 Helianthus annuus HOM05D029832 ORTHO05D007753 4.8e-10 71.6 276 30.8
Carub.0008s1265 Capsella rubella HOM05D008661 ORTHO05D010872 1.4e-09 70.1 239 30.5
Lsat_1_v5_gn_2_131160 Lactuca sativa HOM05D029832 ORTHO05D007753 4.0e-09 68.6 396 26.3
CDE04G0350 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 9.0e-09 67.4 1134 24.7
Cpa.g.sc107.94 Carica papaya HOM05D006627 ORTHO05D007753 2.6e-08 65.9 294 26.5
HanXRQChr14g0462471 Helianthus annuus HOM05D029832 ORTHO05D007753 3.8e-07 62.0 350 25.4
BcaC04g20573 Brassica carinata HOM05D008661 ORTHO05D010872 1.9e-06 59.7 298 26.8
BraA10t43090Z Brassica rapa HOM05D008661 ORTHO05D010872 1.9e-06 59.7 319 26.0
C09p42010 Brassica napus HOM05D008661 ORTHO05D010872 2.4e-06 59.3 298 26.8
BolC9t57083H Brassica oleracea HOM05D008661 ORTHO05D010872 2.4e-06 59.3 298 26.8
BcaB08g35607 Brassica carinata HOM05D008661 ORTHO05D010872 4.2e-06 58.5 353 26.6


User provided reference genes

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